BAC Information

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BAC

Clone NameB6Ng01-035P08
Chromosome4 (Build37)
Map Location 133,379,148 - 133,502,212
singlet/doubletdoublet
Overlap geneRps6ka1, 4930429E23Rik, LOC100042151
Upstream genePpp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a
Downstream geneHmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035P08.bB6Ng01-035P08.g
ACCDH864286DH864287
length448459
definitionDH864286|Mus musculus domesticus DNA, BAC clone: B6Ng01-035P08, 5' end.DH864287|Mus musculus domesticus DNA, BAC clone: B6Ng01-035P08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,501,759 - 133,502,212)(133,379,148 - 133,379,612)
sequence
ctaggggcaattccggtctttgttgtcaggatatccaattccttcttctt
gtctctttgctcatgaccacttgacaaactgcagcagcaggaaccagcag
cagcagaggcaggaaccattgccacagactcttttgggctctcccagaag
taaaactgtctgcagctggtaaagatcacacctctgctaatgcatgaggc
aaatcacaatcacctgctgtgaagcaacctcttaccacacatctgggatt
aaaaaaaaacatattcctataacataacacggtttttaaagaaaccaaaa
ttcacactacagatctgtatattgtaaaaaatcaatatttaaataataaa
aaaaaaagcagctaacaggtatgtgtgaaacagctggagtagccgggcaa
taatggtggatactttttcttttctttttttggtttttcgagacaggg
cagataactgcttcagtgcctctcagatcttggactgtgttaaccaggtg
cctaaatctgctgtaaatctatttgtaaacagagccatctctctaggttc
ccgctgacagttactcattaaagctatgaagcctttaagcctcagtggaa
atgttcatatcagaagagaatgtttaccaagcttgctgtctcgccctgcg
atcccagcacttgagaagcagaagcagaaggatagctttgagttcgaggc
cagcctggtctacacagccaggtccaggccgagcaaagggaaggctgtgg
ttgtagctcatgtgataggatgcttgggtagcatggaggaagccctgggt
tcgattcccagcatggcttaaaaccagagacaggaggatcagagcaagct
tgaggccatcttgtaatacatgggaccatgtctccagaaaaggggggggg
gggattaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_133501759_133502212
seq2: B6Ng01-035P08.b_45_498 (reverse)

seq1  CCCTGTCTCGAAAAACCAAAAAAAGAAAAGAAAAAGTATCCACCATTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTCGAAAAACCAAAAAAAGAAAAGAAAAAGTATCCACCATTATT  50

seq1  GCCCGGCTACTCCAGCTGTTTCACACATACCTGTTAGCTGCTTTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGCTACTCCAGCTGTTTCACACATACCTGTTAGCTGCTTTTTTTTT  100

seq1  TATTATTTAAATATTGATTTTTTACAATATACAGATCTGTAGTGTGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTAAATATTGATTTTTTACAATATACAGATCTGTAGTGTGAATT  150

seq1  TTGGTTTCTTTAAAAACCGTGTTATGTTATAGGAATATGTTTTTTTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTCTTTAAAAACCGTGTTATGTTATAGGAATATGTTTTTTTTTAA  200

seq1  TCCCAGATGTGTGGTAAGAGGTTGCTTCACAGCAGGTGATTGTGATTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGATGTGTGGTAAGAGGTTGCTTCACAGCAGGTGATTGTGATTTGC  250

seq1  CTCATGCATTAGCAGAGGTGTGATCTTTACCAGCTGCAGACAGTTTTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCATTAGCAGAGGTGTGATCTTTACCAGCTGCAGACAGTTTTACT  300

seq1  TCTGGGAGAGCCCAAAAGAGTCTGTGGCAATGGTTCCTGCCTCTGCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAGAGCCCAAAAGAGTCTGTGGCAATGGTTCCTGCCTCTGCTGCT  350

seq1  GCTGGTTCCTGCTGCTGCAGTTTGTCAAGTGGTCATGAGCAAAGAGACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTTCCTGCTGCTGCAGTTTGTCAAGTGGTCATGAGCAAAGAGACAA  400

seq1  GAAGAAGGAATTGGATATCCTGACAACAAAGACCGGAATTGCCCCTAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGAATTGGATATCCTGACAACAAAGACCGGAATTGCCCCTAGGA  450

seq1  ATTC  454
      ||||
seq2  ATTC  454

seq1: chr4_133379148_133379612
seq2: B6Ng01-035P08.g_65_529

seq1  GAATTCCAGATAACTGCTTCAGTGCCTCTCAGATCTTGGACTGTGTTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATAACTGCTTCAGTGCCTCTCAGATCTTGGACTGTGTTAAC  50

seq1  CAGGTGCCTAAATCTGCTGTAAATCTATTTGTAAACAGAGCCATCTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCCTAAATCTGCTGTAAATCTATTTGTAAACAGAGCCATCTCTCT  100

seq1  AGGTTCCCGCTGACAGTTACTCATTAAAGCTATGAAGCCTTTAAGCCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCCGCTGACAGTTACTCATTAAAGCTATGAAGCCTTTAAGCCTCA  150

seq1  GTGGAAATGTTCATATCAGAAGAGAATGTTTACCAAGCTTGCTGTCTCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAATGTTCATATCAGAAGAGAATGTTTACCAAGCTTGCTGTCTCGC  200

seq1  CCTGCGATCCCAGCACTTGAGAAGCAGAAGCAGAAGGATAGCTTTGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCGATCCCAGCACTTGAGAAGCAGAAGCAGAAGGATAGCTTTGAGTT  250

seq1  CGAGGCCAGCCTGGTCTACACAGCCAGGTCCAGGCCGAGCAAAGGGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCCAGCCTGGTCTACACAGCCAGGTCCAGGCCGAGCAAAGGGAAGG  300

seq1  CTGTGGTTGTAGCTCATGTGATAGGATGCTTGGGTAGCATGGAGGAAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTTGTAGCTCATGTGATAGGATGCTTGGGTAGCATGGAGGAAGCC  350

seq1  CTGGGTTCGATTCCCAGCATGGCTTAAAACCAGAGACAGGAGGATCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTCGATTCCCAGCATGGCTTAAAACCAGAGACAGGAGGATCAGAG  400

seq1  CAAGCTTGAGGCCATCTTGTAATACATGGGACCATGTCTCCAGAAAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTGAGGCCATCTTGTAATACATGGGACCATGTCTCCAGAAAAGGG  450

seq1  GGGGGGGGGATTAAA  465
      |||||||||||||||
seq2  GGGGGGGGGATTAAA  465