BAC Information

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BAC

Clone NameB6Ng01-036E12
Chromosome4 (Build37)
Map Location 87,053,954 - 87,079,125
singlet/doubletdoublet
Overlap genenone
Upstream geneAdamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l, Slc24a2
Downstream geneMllt3, BC057079, Ptplad2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036E12.bB6Ng01-036E12.g
ACCDH864508DH864509
length869629
definitionDH864508|Mus musculus domesticus DNA, BAC clone: B6Ng01-036E12, 5' end.DH864509|Mus musculus domesticus DNA, BAC clone: B6Ng01-036E12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,053,954 - 87,054,834)(87,078,504 - 87,079,125)
sequence
gaattcttggagaatcctaaaagtcatttaactaagagccagaacagggc
ttaaattcaagtcttcatcacctatccaaaaacaacctaatttctgcgaa
aattatccagtttgacaaagactgtgtgtgtctaacctgactaaatttgt
cagaacagacagcgtggtgggcactgtgcattctcactgatgatcactga
agtcatcacagaacctaggaataggactttaaaaataaaaaggaatgggt
gtgttgggtggggcatgtaacccagtggtagagtccttctctttgtgtgt
caggtcttgggcttcattgctgtaactgtaaacacacccatcagtatgag
tccaagagcacatgcacagccccaaatggcactgcaacagggtttgtgta
gcagacacagccatggtccttactcaggctgtgatccacaaagcctcacc
cagagacaagcagtgcagccttctcctctggccctgaagcaattctctta
gggagcaaattggaaatacactccccccatttaaggggaaaaatggtcca
acagatgccgcatctagggaagcagttcatttcacgctttaaaaggtttt
tcccctgtcacctgggagatagcaccgctttgcaacaacaagctgggtta
aggccagggctacaagaagagtacatggatttccctccttcttgccctct
aacactacataaagctaatttcttcccaccatcctctcatttgggattat
gctccaggggcacaggaatgatcaagtatgtcccaccttctccaaatatg
aatgggagaaaactcccattgggaatcccggaaccaagtgaccgagtcaa
tttctttaaaggtttcaaa
gaattctaatcctcataggctgctcttttcactgggtggtttttaatatt
tattggcaagggctgttttaatcctgatgaaaataacatgtcccggggaa
aagggttgtagctagaatgagtgaatgtggccttggcatttaaaacgttc
tacggagatcaataggaatacagtggagtctaacagagggtaaaggtgac
ccagaaatgaatcttggcagaagacaggaaatattactgccagtaggaag
ttgagctcaaaaaactcggctctggctgagttacttccttactgaaaggc
ccatactactgaccagagagaagtcagtataacttagagttgagaaggaa
cagtcagagttcatctgacagggttcaaaccccagctttgctgtctctca
gtcacaacttaaaggaaaatgagtgcaagccttcttgtgtgtattagtta
agacaattcacgttaatcaccccgtgtcgtggtggatacagaatcaaggg
tgacataactggggaaattcattaacaggccaaattctttccaggggtat
gggcttttccctgaaagtcccttgaatttttttcccaaaaaaatagcatt
tagaatttgaatgaaccaagctaaagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_87053954_87054834
seq2: B6Ng01-036E12.b_46_914

seq1  GAATTCTTGGAGAATCCTAAAAGTCATTTAACTAAGAGCCAGAACAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGAGAATCCTAAAAGTCATTTAACTAAGAGCCAGAACAGGGC  50

seq1  TTAAATTCAAGTCTTCATCACCTATCCAAAAACAACCTAATTTCTGCGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTCAAGTCTTCATCACCTATCCAAAAACAACCTAATTTCTGCGAA  100

seq1  AATTATCCAGTTTGACAAAGACTGTGTGTGTCTAACCTGACTAAATTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCCAGTTTGACAAAGACTGTGTGTGTCTAACCTGACTAAATTTGT  150

seq1  CAGAACAGACAGCGTGGTGGGCACTGTGCATTCTCACTGATGATCACTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGACAGCGTGGTGGGCACTGTGCATTCTCACTGATGATCACTGA  200

seq1  AGTCATCACAGAACCTAGGAATAGGACTTTAAAAATAAAAAGGAATGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCACAGAACCTAGGAATAGGACTTTAAAAATAAAAAGGAATGGGT  250

seq1  GTGTTGGGTGGGGCATGTAACCCAGTGGTAGAGTCCTTCTCTTTGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGGTGGGGCATGTAACCCAGTGGTAGAGTCCTTCTCTTTGTGTGT  300

seq1  CAGGTCTTGGGCTTCATTGCTGTAACTGTAAACACACCCATCAGTATGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTTGGGCTTCATTGCTGTAACTGTAAACACACCCATCAGTATGAG  350

seq1  TCCAAGAGCACATGCACAGCCCCAAATGGCACTGCAACAGGGTTTGTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAGCACATGCACAGCCCCAAATGGCACTGCAACAGGGTTTGTGTA  400

seq1  GCAGACACAGCCATGGTCCTTACTCAGGCTGTGATCCACAAAGCCTCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACACAGCCATGGTCCTTACTCAGGCTGTGATCCACAAAGCCTCACC  450

seq1  CAGAGACAAGCAGTGCAGCCTTCTCCTCTGGCCCTGAAGCAATTCTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAAGCAGTGCAGCCTTCTCCTCTGGCCCTGAAGCAATTCTCTTA  500

seq1  GGGAGCAAATTGGAAATACACTCCCCCCATTTAAGGGGAAAAATGGTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCAAATTGGAAATACACTCCCCCCATTTAAGGGGAAAAATGGTCCA  550

seq1  ACAGATGCCGCATCTAGGGAAGCAGTTCATTTCACGCTTTAAAAGGTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACAGATGCCGCATCTAGGGAAGCAGTTCATTTCACGCTTTAAAAGGT-TT  599

seq1  TTCTCCTGTCACCTGGGAGATAGCACCGCATTGCAACAACAGGCTGGGTG  650
      ||| ||||||||||||||||||||||||| ||||||||||| ||||||| 
seq2  TTCCCCTGTCACCTGGGAGATAGCACCGCTTTGCAACAACAAGCTGGGTT  649

seq1  TAGGCCAGGGCTTACAAGAAGATGTACATGGATTTTCTCATCTTCTTGCC  700
       |||||||||| |||||||||| ||||||||| |||| |  |||||||||
seq2  AAGGCCAGGGC-TACAAGAAGA-GTACATGGA-TTTCCCTCCTTCTTGCC  696

seq1  CTCTAACACTAGCATAAAGCTAATATCTCCCAACATTCTTCTCATTTGTG  750
      ||||||||||| |||||||||||| ||| || ||  || ||||||||| |
seq2  CTCTAACACTA-CATAAAGCTAATTTCTTCCCACCATCCTCTCATTTGGG  745

seq1  ACTTATGCTCCAGGGGACCAGGAATGATCAAGTTATGTCCCACCTTCTCC  800
      | ||||||||||||||  |||||||||||||| |||||||||||||||||
seq2  A-TTATGCTCCAGGGGCACAGGAATGATCAAG-TATGTCCCACCTTCTCC  793

seq1  AAATATGAAGTGGAGGAGACACTCACATTGGAAATCCTGCAACCAAGTGA  850
      |||||||||  ||||   | |||| |||||| ||||| | ||||||||| 
seq2  AAATATGAATGGGAG--AAAACTCCCATTGGGAATCCCGGAACCAAGTG-  840

seq1  ACTGAGTCAATTTCTTTGAGATGTTTTCAAA  881
      || ||||||||||||||   | | |||||||
seq2  ACCGAGTCAATTTCTTT--AAAGGTTTCAAA  869

seq1: chr4_87078504_87079125
seq2: B6Ng01-036E12.g_69_697 (reverse)

seq1  TTTCTTTAGCTTGGTTCATTCATATCTGACATGCTAATTTTCTAGGGAAA  50
      |||||||||||||||||||||| ||   | |||||| |||| | || |||
seq2  TTTCTTTAGCTTGGTTCATTCAAATTCTAAATGCTATTTTTTTGGGAAAA  50

seq1  AAATTC-AGTGAC-TTCA-GGAAAAG-CCATA-CACTAGAAAGAA-TTGG  94
      |||||| || ||| |||| ||||||| ||||| | || ||||||| ||||
seq2  AAATTCAAGGGACTTTCAGGGAAAAGCCCATACCCCTGGAAAGAATTTGG  100

seq1  CCTGTTAATGAATTT-CCCAGTTATGTCACCCTTGA-TCTGTATCAACAT  142
      ||||||||||||||| |||||||||||||||||||| |||||||| ||  
seq2  CCTGTTAATGAATTTCCCCAGTTATGTCACCCTTGATTCTGTATCCACCA  150

seq1  CGACACGTGGTGATTTACGTGAATTGTCTTAACTAATATCACACAAGAAG  192
      ||||||| ||||||| |||||||||||||||||||||| |||||||||||
seq2  CGACACGGGGTGATTAACGTGAATTGTCTTAACTAATA-CACACAAGAAG  199

seq1  GCTTGCACTCATTTTCATTTAAGTTGTGACTGAGAGACAGCAAAGCTGGG  242
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCTTGCACTCATTTTCCTTTAAGTTGTGACTGAGAGACAGCAAAGCTGGG  249

seq1  GTTTGAACCCTGTCAGATGAACTCTGACTGTTCCTTCTCAACTCTAAGTT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAACCCTGTCAGATGAACTCTGACTGTTCCTTCTCAACTCTAAGTT  299

seq1  ATACTGACTTCTCTCTGGTCAGTAGTATGGGCCTTTCAGTAAGGAAGTAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGACTTCTCTCTGGTCAGTAGTATGGGCCTTTCAGTAAGGAAGTAA  349

seq1  CTCAGCCAGAGCCGAGTTTTTTGAGCTCAACTTCCTACTGGCAGTAATAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCAGAGCCGAGTTTTTTGAGCTCAACTTCCTACTGGCAGTAATAT  399

seq1  TTCCTGTCTTCTGCCAAGATTCATTTCTGGGTCACCTTTACCCTCTGTTA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTCTTCTGCCAAGATTCATTTCTGGGTCACCTTTACCCTCTGTTA  449

seq1  GACTCCACTGTATTCCTATTGATCTCCGTAGAACGTTTTAAATGCCAAGG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCACTGTATTCCTATTGATCTCCGTAGAACGTTTTAAATGCCAAGG  499

seq1  CCACATTCACTCATTCTAGCTACAACCCTTTTCCCCGGGACATGTTATTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTCACTCATTCTAGCTACAACCCTTTTCCCCGGGACATGTTATTT  549

seq1  TCATCAGGATTAAAACAGCCCTTGCCAATAAATATTAAAAACCACCCAGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGGATTAAAACAGCCCTTGCCAATAAATATTAAAAACCACCCAGT  599

seq1  GAAAAGAGCAGCCTATGAGGATTAGAATTC  622
      ||||||||||||||||||||||||||||||
seq2  GAAAAGAGCAGCCTATGAGGATTAGAATTC  629