BAC Information

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BAC

Clone NameB6Ng01-036P22
Chromosome4 (Build37)
Map Location 45,149,515 - 45,327,980
singlet/doubletdoublet
Overlap geneFrmpd1, Rg9mtd3
Upstream geneRnf38, Melk, Pax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik
Downstream geneExosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036P22.bB6Ng01-036P22.g
ACCDH865002DH865003
length5231,044
definitionDH865002|Mus musculus domesticus DNA, BAC clone: B6Ng01-036P22, 5' end.DH865003|Mus musculus domesticus DNA, BAC clone: B6Ng01-036P22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,149,515 - 45,150,043)(45,326,955 - 45,327,980)
sequence
aaaccatccaatcctgatggtcagaatgagaacacaatgcactctgaact
taggagatagcagatgtgctagtgaaccgcctaggttcaaattcagacac
cgtctgctgtgaggtgtggggtaagtcttgcttgtaaatggggataatga
tggaacttgctttactgggttactgtgacgatcaaacctgctaactagta
agaccggtgcttagaaaatatgctaaccagtgtgggggcagtgcggtctg
cacataggaaatgctcagagaaattagccattatcttgattaaattgaag
tcatgttgtcagtctaatccaagcgcttgattggattcaggaggcatcaa
gtcttcacaaacttcataattctaagtttcgtttctgaggtgggtcactt
gccaaacacatcatcctaaccactttttaaatgctcgttttatttactat
tattgtgtgcataggtgtgtatgtttgatgtctgtgtgagtacaggtgct
ggtgtgtgcatgcatgtgtgtgt
gaattctgaagaacgtagccttttcctggagaaactcctttcttcagtgc
ttcaggccagttacgagtttcaaagtaagtagacaggatatcgaacactg
tcagaaggtaaacagatgttggttgaccgttagggagaagactagtaaag
gactaatgtggaaaaggggtgctgtggaatgtcttcactgcccagctgtc
ctgagtcacatgtgatggtagatcatgggaacagtggggcaaggacacag
ccctacttacaaggcctcagcttacactgaacacttgtgaatggacaact
gcaaccgaggaacacagcaccatgggaataccaacaaggggcctgacagc
ctgcagtgggaggagaggcagctaagatgctcctgagctgacgcctagag
aacaaagatactggccaatgaaggtaggtgacaaggtgttctaggcaaag
ggacacttttatccaggaaagaaaacaaaaggagggaactctcaatggcc
aggcagaatggctgccagcaagtgcatgcaggagagtccaggcgtcaaag
gaaactgagtcaagggtactacacttaaagcaaacccagcagagtgagct
atcaaatagtctttgagtaaacagagaacacagagcccatccaagacaga
gcaacagtaaaaggcctgtaaggagaagcacattgggtttggctggagta
gtacctttggtttgatggccaatattttccgaatggtagtttttctcatt
ctggcgcttggatcattttattccctggattggcaagcggggctgtcttg
acagaagtatttctcggggcctttttgaaattgtcacccttcttggaaat
caaattttcttattataaaaattacacgttattattttcattgtattcac
ctgtatagggactcgccagttcttgaaaacctggagagggcgtgactcaa
tcttacacttgtcggacggctagaatcaaggacacagatgacagctcatg
ctgttgaagatgtgagccaggggaaagaattgtctccgtcgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_45149515_45150043
seq2: B6Ng01-036P22.b_50_578

seq1  GAATTCAAACCATCCAATCCTGATGGTCAGAATGAGAACACAATGCACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCATCCAATCCTGATGGTCAGAATGAGAACACAATGCACTC  50

seq1  TGAACTTAGGAGATAGCAGATGTGCTAGTGAACCGCCTAGGTTCAAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTAGGAGATAGCAGATGTGCTAGTGAACCGCCTAGGTTCAAATTC  100

seq1  AGACACCGTCTGCTGTGAGGTGTGGGGTAAGTCTTGCTTGTAAATGGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCGTCTGCTGTGAGGTGTGGGGTAAGTCTTGCTTGTAAATGGGGA  150

seq1  TAATGATGGAACTTGCTTTACTGGGTTACTGTGACGATCAAACCTGCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATGGAACTTGCTTTACTGGGTTACTGTGACGATCAAACCTGCTAA  200

seq1  CTAGTAAGACCGGTGCTTAGAAAATATGCTAACCAGTGTGGGGGCAGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAAGACCGGTGCTTAGAAAATATGCTAACCAGTGTGGGGGCAGTGC  250

seq1  GGTCTGCACATAGGAAATGCTCAGAGAAATTAGCCATTATCTTGATTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGCACATAGGAAATGCTCAGAGAAATTAGCCATTATCTTGATTAAA  300

seq1  TTGAAGTCATGTTGTCAGTCTAATCCAAGCGCTTGATTGGATTCAGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTCATGTTGTCAGTCTAATCCAAGCGCTTGATTGGATTCAGGAGG  350

seq1  CATCAAGTCTTCACAAACTTCATAATTCTAAGTTTCGTTTCTGAGGTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGTCTTCACAAACTTCATAATTCTAAGTTTCGTTTCTGAGGTGGG  400

seq1  TCACTTGCCAAACACATCATCCTAACCACTTTTTAAATGCTCGTTTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGCCAAACACATCATCCTAACCACTTTTTAAATGCTCGTTTTATT  450

seq1  TACTATTATTGTGTGCATAGGTGTGTATGTTTGATGTCTGTGTGAGTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTATTGTGTGCATAGGTGTGTATGTTTGATGTCTGTGTGAGTACA  500

seq1  GGTGCTGGTGTGTGCATGCATGTGTGTGT  529
      |||||||||||||||||||||||||||||
seq2  GGTGCTGGTGTGTGCATGCATGTGTGTGT  529

seq1: chr4_45326955_45327980
seq2: B6Ng01-036P22.g_68_1111 (reverse)

seq1  CAGCGACGGAGGACCATTCTTTCCCCTCGCTCCACATCTTCAACAGCATG  50
      |||||||||| ||| |||||||||||| ||| ||||||||||||||||||
seq2  CAGCGACGGA-GACAATTCTTTCCCCTGGCT-CACATCTTCAACAGCATG  48

seq1  AGCTGTCATCTGTGTCCTTGATCTTAGCCGTTCTGACAAGTGTAAGATTG  100
      ||||||||||||||||||||||  |||||| || ||||||||||||||||
seq2  AGCTGTCATCTGTGTCCTTGATTCTAGCCG-TCCGACAAGTGTAAGATTG  97

seq1  AGTCACGCCCTCT-CAGGTTTTCA--GACTGGC-AGTCCCTATTACA-GT  145
      ||||||||||||| ||||||||||   |||||| |||||||| |||| ||
seq2  AGTCACGCCCTCTCCAGGTTTTCAAGAACTGGCGAGTCCCTA-TACAGGT  146

seq1  GAATACAATGAAAATAAT-ACGTGTAATTTTTATAATAAGAAAATTTGAT  194
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAATACAATGAAAATAATAACGTGTAATTTTTATAATAAGAAAATTTGAT  196

seq1  TTAC-AGAA-GGTGAC-ATTTCAAAAAG--CCCGAG-AATAC-TCTGTCA  237
      || | |||| |||||| |||||||||||  |||||| ||||| |||||||
seq2  TTCCAAGAAGGGTGACAATTTCAAAAAGGCCCCGAGAAATACTTCTGTCA  246

seq1  AGACAG-CCCGCTTGCCAATCCA-GGAAT-ACATGAT-CAAGCGCCAGAA  283
      |||||| |||||||||||||||| ||||| | ||||| ||||||||||||
seq2  AGACAGCCCCGCTTGCCAATCCAGGGAATAAAATGATCCAAGCGCCAGAA  296

seq1  TGAGAAAAACTACCATTCGG-AAATATTGGCCATCAA--CCAAGGTACTA  330
      |||||||||||||||||||| ||||||||||||||||  | |||||||||
seq2  TGAGAAAAACTACCATTCGGAAAATATTGGCCATCAAACCAAAGGTACTA  346

seq1  CT-CAGCCAAACCCAATGTGCTTCTCCTTACAGGCCTTTTACTGTTGCTC  379
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCCAAACCCAATGTGCTTCTCCTTACAGGCCTTTTACTGTTGCTC  396

seq1  TGTCTTGGATGGGCTCTGTGTTCTCTGTTTACTCAAAGACTATTTGATAG  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGGATGGGCTCTGTGTTCTCTGTTTACTCAAAGACTATTTGATAG  446

seq1  CTCACTCTGCT-GGTTTGCTTTAAGTGTAGTACCCTTGACTCAGTTTCCT  478
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTGCTGGGTTTGCTTTAAGTGTAGTACCCTTGACTCAGTTTCCT  496

seq1  TTGACGCCTGGACTCTCCTGCATGCACTTGCTGGCAGCCATTCTGCCTGG  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACGCCTGGACTCTCCTGCATGCACTTGCTGGCAGCCATTCTGCCTGG  546

seq1  CCATTGAGAGTTCCCTCCTTTTGTTTTCTTTCCTGGATAAAAGTGTCCCT  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGAGAGTTCCCTCCTTTTGTTTTCTTTCCTGGATAAAAGTGTCCCT  596

seq1  TTGCCTAGAACACCTTGTCACCTACCTTCATTGGCCAGTATCTTTGTTCT  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTAGAACACCTTGTCACCTACCTTCATTGGCCAGTATCTTTGTTCT  646

seq1  CTAGGCGTCAGCTCAGGAGCATCTTAGCTGCCTCTCCTCCCACTGCAGGC  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCGTCAGCTCAGGAGCATCTTAGCTGCCTCTCCTCCCACTGCAGGC  696

seq1  TGTCAGGCCCCTTGTTGGTATTCCCATGGTGCTGTGTTCCTCGGTTGCAG  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGCCCCTTGTTGGTATTCCCATGGTGCTGTGTTCCTCGGTTGCAG  746

seq1  TTGTCCATTCACAAGTGTTCAGTGTAAGCTGAGGCCTTGTAAGTAGGGCT  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCATTCACAAGTGTTCAGTGTAAGCTGAGGCCTTGTAAGTAGGGCT  796

seq1  GTGTCCTTGCCCCACTGTTCCCATGATCTACCATCACATGTGACTCAGGA  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTTGCCCCACTGTTCCCATGATCTACCATCACATGTGACTCAGGA  846

seq1  CAGCTGGGCAGTGAAGACATTCCACAGCACCCCTTTTCCACATTAGTCCT  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGGCAGTGAAGACATTCCACAGCACCCCTTTTCCACATTAGTCCT  896

seq1  TTACTAGTCTTCTCCCTAACGGTCAACCAACATCTGTTTACCTTCTGACA  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGTCTTCTCCCTAACGGTCAACCAACATCTGTTTACCTTCTGACA  946

seq1  GTGTTCGATATCCTGTCTACTTACTTTGAAACTCGTAACTGGCCTGAAGC  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCGATATCCTGTCTACTTACTTTGAAACTCGTAACTGGCCTGAAGC  996

seq1  ACTGAAGAAAGGAGTTTCTCCAGGAAAAGGCTACGTTCTTCAGAATTC  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGAAAGGAGTTTCTCCAGGAAAAGGCTACGTTCTTCAGAATTC  1044