BAC Information

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BAC

Clone NameB6Ng01-037H03
Chromosome4 (Build37)
Map Location 54,632,275 - 54,741,929
singlet/doubletdoublet
Overlap geneLOC100041303
Upstream geneSlc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280, LOC666901
Downstream geneLOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348, Klf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037H03.bB6Ng01-037H03.g
ACCDH865303DH865304
length9211,118
definitionDH865303|Mus musculus domesticus DNA, BAC clone: B6Ng01-037H03, 5' end.DH865304|Mus musculus domesticus DNA, BAC clone: B6Ng01-037H03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,632,275 - 54,633,195)(54,740,805 - 54,741,929)
sequence
gaattcatttatggaaagagcagagaagattctgtaatcctgtctcagca
atttgacttctagggattacttcttgggaaatcactgggaagtgtttggt
catttgtttggctgttgctaagtacagaccatgtgctaacactgccctaa
tttctgaaaatatatagacttgtataaatatcatctattttgtgtacaaa
aaaacagtaatagccccattttgtagacgaggaaagcaaggaataaaaag
ttgtcctatccatgatcatgttgctgcttcaagatgagcagcaggcctga
gagacagatgctagctatggtctttacttcaggtttctctattggcagta
gctcaatttacagagctcagcataaacagaagaggaaggaagaacttggg
ggaagagggacgtgaagaaagggagaaggagaaatctttagaaagaagtg
ttttaaaaacaaaagtaagttaaagctattggcagtagtaaaaggcctga
gacagccagacatcatgacccatggctttaatcccagcacgtggagagca
gaggcaggaggatctctgtttgtttctggagattcaagactatatagtga
gaccttgtttcaaaaagaaaaaaaaatcttgagtcaaagaatcagagtat
ttctaaatggcgcagtatatacaaagacagagctgtattcccttgctcag
tcaactgcttacccactgaggaagaacacactgagagccaggcaaggcac
acaaagttggcatggaaattagtaggctgctgaattctgggtggctatag
cagaagagcatagttttgcttaattattagaacagagaaaatgcatttct
gccctatattctgaccggaattaaattgtccctactcttcctttctctaa
atgctttcatctgccagttgc
gaattcatggaggtgatgagagtgggtaagacctttaaagacatattcac
tggggaatgaaaatgctctcacgagatatgaatgtacaggtgaaggcctg
ggacaacgagaggcaagaactacagtgagaattactagagccctgagaaa
agtgggggagtcggacaaattagaaccagaaggcatagagccttgactgc
cacagacctccatcttctatgtgttaagtaggtaacagtgtcactaggac
gacatggactaatccaagtggaatctcatgaagataggagtctcatatag
taagagatcagagtcagtgaagcaaaggcctttcaacagcctgaccacat
tctgattctctattgcctgattcttcattgcatttagtaatcaaagtaat
ggggtccatcaatttatatatgcatatatatgctttttttattcacttcc
cccctactatccctacatccattttcttgccatcaaatgattttttcttc
cggttagtcctcatttctgcttccctattagatctctcccattacacgat
ttcccacttcctttacgatcttcttctctcttaatcccagttttctagtt
tcatgacttaggagaattcacatataaacacacacacacacacacacaca
cacagaggtggaggggcagacttttgctactttgggtgttctttcttttt
tttttttttttttacatctttctctaacccttttcttcgacccttccaac
cccttaacaccagttagtagagacaaaaaatgatagagggggaaaggggt
gacactgtcatttagactaccctcttgatgattatggggggtcaagttcc
ctttgagcaagtttgatcctttgacttcaagatatctaatttcttcggtt
tgattcttctttgcacactactttaacaaccacaaccaacaacccaccta
gcaggctctagcattatatacctcctgaaaagttctcagagttctaacta
ttccacaatcacaaaactattctgcactggcaaatcatgccttgttaagc
acgaaacaaatcatagtcagctgcgtggaaattgaagcacgtctttaccc
acacttggataaacaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_54632275_54633195
seq2: B6Ng01-037H03.b_48_968

seq1  GAATTCATTTATGGAAAGAGCAGAGAAGATTCTGTAATCCTGTCTCAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTATGGAAAGAGCAGAGAAGATTCTGTAATCCTGTCTCAGCA  50

seq1  ATTTGACTTCTAGGGATTACTTCTTGGGAAATCACTGGGAAGTGTTTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACTTCTAGGGATTACTTCTTGGGAAATCACTGGGAAGTGTTTGGT  100

seq1  CATTTGTTTGGCTGTTGCTAAGTACAGACCATGTGCTAACACTGCCCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTTGGCTGTTGCTAAGTACAGACCATGTGCTAACACTGCCCTAA  150

seq1  TTTCTGAAAATATATAGACTTGTATAAATATCATCTATTTTGTGTACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAAAATATATAGACTTGTATAAATATCATCTATTTTGTGTACAAA  200

seq1  AAAACAGTAATAGCCCCATTTTGTAGACGAGGAAAGCAAGGAATAAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGTAATAGCCCCATTTTGTAGACGAGGAAAGCAAGGAATAAAAAG  250

seq1  TTGTCCTATCCATGATCATGTTGCTGCTTCAAGATGAGCAGCAGGCCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTATCCATGATCATGTTGCTGCTTCAAGATGAGCAGCAGGCCTGA  300

seq1  GAGACAGATGCTAGCTATGGTCTTTACTTCAGGTTTCTCTATTGGCAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGATGCTAGCTATGGTCTTTACTTCAGGTTTCTCTATTGGCAGTA  350

seq1  GCTCAATTTACAGAGCTCAGCATAAACAGAAGAGGAAGGAAGAACTTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAATTTACAGAGCTCAGCATAAACAGAAGAGGAAGGAAGAACTTGGG  400

seq1  GGAAGAGGGACGTGAAGAAAGGGAGAAGGAGAAATCTTTAGAAAGAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGGACGTGAAGAAAGGGAGAAGGAGAAATCTTTAGAAAGAAGTG  450

seq1  TTTTAAAAACAAAAGTAAGTTAAAGCTATTGGCAGTAGTAAAAGGCCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAACAAAAGTAAGTTAAAGCTATTGGCAGTAGTAAAAGGCCTGA  500

seq1  GACAGCCAGACATCATGACCCATGGCTTTAATCCCAGCACGTGGAGAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCAGACATCATGACCCATGGCTTTAATCCCAGCACGTGGAGAGCA  550

seq1  GAGGCAGGAGGATCTCTGTTTGTTTCTGGAGATTCAAGACTATATAGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGAGGATCTCTGTTTGTTTCTGGAGATTCAAGACTATATAGTGA  600

seq1  GACCTTGTTTCAAAAAGAAAAAAAAATCTTGAGTCAAAGAATCAGAGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGTTTCAAAAAGAAAAAAAAATCTTGAGTCAAAGAATCAGAGTAT  650

seq1  TTCTAAATGGCGCAGTATATACAAAGACAGAGCTGTATTCCC-TGCTCAG  699
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTCTAAATGGCGCAGTATATACAAAGACAGAGCTGTATTCCCTTGCTCAG  700

seq1  TCAACTGCTTACCCACTGAGGAAGAACACACTGAGAGCCAGGCAAGGCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGCTTACCCACTGAGGAAGAACACACTGAGAGCCAGGCAAGGCAC  750

seq1  ACAAAGTTGGCATGGAAATTAGTAGGCTGCTGAATTCTGGGTGGCTATAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTTGGCATGGAAATTAGTAGGCTGCTGAATTCTGGGTGGCTATAG  800

seq1  CAGAAGAGCATAG-TTTGCTTAATTATTAGAACAGAGAAAATGCA-TTCT  847
      ||||||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  CAGAAGAGCATAGTTTTGCTTAATTATTAGAACAGAGAAAATGCATTTCT  850

seq1  GCCCTAGAATCTGACCGGAATTAAATTGTCCCTACTCTTCCTTTTTCTCT  897
      |||||| | ||||||||||||||||||||||||||||||||  |||||||
seq2  GCCCTATATTCTGACCGGAATTAAATTGTCCCTACTCTTCC--TTTCTCT  898

seq1  AAATGCTTTCATCTTGCCAGTTGC  921
      ||||||||||||| ||||||||||
seq2  AAATGCTTTCATC-TGCCAGTTGC  921

seq1: chr4_54740805_54741929
seq2: B6Ng01-037H03.g_66_1183 (reverse)

seq1  TTTTGTTTTAATCCTAAGTGTGGGGTATAGGACTGCTTCAAATTTCCCAC  50
      ||||||||  |||| |||||| ||||| ||   ||||||||  || ||||
seq2  TTTTGTTT--ATCC-AAGTGT-GGGTAAAGACGTGCTTCAA--TTTCCAC  44

seq1  AGCAGCTGACTATGATTTGCTCCGTGCTCTAACAGGGGCATGATTTTGCA  100
       |||||||||||||||||| | |||||| |||||  ||||||| ||||| 
seq2  -GCAGCTGACTATGATTTGTTTCGTGCT-TAACA-AGGCATGA-TTTGCC  90

seq1  AGTGGCAG-ATAGTTTTGTGATTGTGTGATAGTTAGAACTCTGAGAACTT  149
      ||| |||| |||||||||||||||||  ||||||||||||||||||||||
seq2  AGT-GCAGAATAGTTTTGTGATTGTGGAATAGTTAGAACTCTGAGAACTT  139

seq1  TTCAGAGGGTATATAAATGCTAGAGCCCTGCTAGGTGGGTTGTTGGTTGT  199
      |||||  ||||||| |||||||||| ||||||||||||||||||||||||
seq2  TTCAGGAGGTATAT-AATGCTAGAG-CCTGCTAGGTGGGTTGTTGGTTGT  187

seq1  GGTTTGTTAAGTAGTGTGCAAAGAAGAATCAAACCGAAGAAATTAGATAT  249
      ||||  | ||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTAAAGTAGTGTGCAAAGAAGAATCAAACCGAAGAAATTAGATAT  237

seq1  CTTGAAGTCAAA-GATCAAACTTGCTCAAA-GGAACTTGA-CCCCCATAA  296
      |||||||||||| ||||||||||||||||| ||||||||| |||||||||
seq2  CTTGAAGTCAAAGGATCAAACTTGCTCAAAGGGAACTTGACCCCCCATAA  287

seq1  TCATCAAGA-GGTAGTCT-AATGACAGTGTCACCCCTTT-CCCCTCTATC  343
      ||||||||| |||||||| |||||||||||||||||||| ||||||||||
seq2  TCATCAAGAGGGTAGTCTAAATGACAGTGTCACCCCTTTCCCCCTCTATC  337

seq1  A-TTTTTGTCTCTACTAACTGGTGTTAAGGGGTTGGAAGGGTCGAAGAAA  392
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGTCTCTACTAACTGGTGTTAAGGGGTTGGAAGGGTCGAAGAAA  387

seq1  AGGGTTAGAGAAAGATGTAAAAAAAAAAAAAAAAAAAAAAAAGAACACCC  442
      ||||||||||||||||||  |||||||||||||||||| |||||||||||
seq2  AGGGTTAGAGAAAGATGT--AAAAAAAAAAAAAAAAAAGAAAGAACACCC  435

seq1  AAAGTAGCAAAAGTCTGCCCCTCCACCTCTGTGTGTGTGTGTGTGTGTGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGCAAAAGTCTGCCCCTCCACCTCTGTGTGTGTGTGTGTGTGTGT  485

seq1  GTGTGTTTATATGTGAATTCTCCTAAGTCATGAAACTAGAAAACTGGGAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTATATGTGAATTCTCCTAAGTCATGAAACTAGAAAACTGGGAT  535

seq1  TAAGAGAGAAGAAGATCGTAAAGGAAGTGGGAAATCGTGTAATGGGAGAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAGAAGAAGATCGTAAAGGAAGTGGGAAATCGTGTAATGGGAGAG  585

seq1  ATCTAATAGGGAAGCAGAAATGAGGACTAACCGGAAGAAAAAATCATTTG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATAGGGAAGCAGAAATGAGGACTAACCGGAAGAAAAAATCATTTG  635

seq1  ATGGCAAGAAAATGGATGTAGGGATAGTAGGGGGGAAGTGAATAAAAAAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAAGAAAATGGATGTAGGGATAGTAGGGGGGAAGTGAATAAAAAAA  685

seq1  GCATATATATGCATATATAAATTGATGGACCCCATTACTTTGATTACTAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATATATGCATATATAAATTGATGGACCCCATTACTTTGATTACTAA  735

seq1  ATGCAATGAAGAATCAGGCAATAGAGAATCAGAATGTGGTCAGGCTGTTG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATGAAGAATCAGGCAATAGAGAATCAGAATGTGGTCAGGCTGTTG  785

seq1  AAAGGCCTTTGCTTCACTGACTCTGATCTCTTACTATATGAGACTCCTAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCTTTGCTTCACTGACTCTGATCTCTTACTATATGAGACTCCTAT  835

seq1  CTTCATGAGATTCCACTTGGATTAGTCCATGTCGTCCTAGTGACACTGTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGAGATTCCACTTGGATTAGTCCATGTCGTCCTAGTGACACTGTT  885

seq1  ACCTACTTAACACATAGAAGATGGAGGTCTGTGGCAGTCAAGGCTCTATG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTTAACACATAGAAGATGGAGGTCTGTGGCAGTCAAGGCTCTATG  935

seq1  CCTTCTGGTTCTAATTTGTCCGACTCCCCCACTTTTCTCAGGGCTCTAGT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGGTTCTAATTTGTCCGACTCCCCCACTTTTCTCAGGGCTCTAGT  985

seq1  AATTCTCACTGTAGTTCTTGCCTCTCGTTGTCCCAGGCCTTCACCTGTAC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCACTGTAGTTCTTGCCTCTCGTTGTCCCAGGCCTTCACCTGTAC  1035

seq1  ATTCATATCTCGTGAGAGCATTTTCATTCCCCAGTGAATATGTCTTTAAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATATCTCGTGAGAGCATTTTCATTCCCCAGTGAATATGTCTTTAAA  1085

seq1  GGTCTTACCCACTCTCATCACCTCCATGAATTC  1125
      |||||||||||||||||||||||||||||||||
seq2  GGTCTTACCCACTCTCATCACCTCCATGAATTC  1118