BAC Information

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BAC

Clone NameB6Ng01-038C19
Chromosome4 (Build37)
Map Location 146,461,726 - 146,537,721
singlet/doubletdoublet
Overlap geneLOC100041561, LOC100041570, OTTMUSG00000010657
Upstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514
Downstream geneLOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038C19.bB6Ng01-038C19.g
ACCDH865818DH865819
length1,1181,174
definitionDH865818|Mus musculus domesticus DNA, BAC clone: B6Ng01-038C19, 5' end.DH865819|Mus musculus domesticus DNA, BAC clone: B6Ng01-038C19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,536,638 - 146,537,721)(146,461,726 - 146,462,926)
sequence
gaattcatcccatatacagacaccaatcgcagacactattgtggatgaca
attagtgcttgttgacaggagcctgatatggctgtctcctgagaggctct
gccagtgcctaaaaaatacaaaggcagatgcttgcagccaaccaatggac
tgagcactgggtccatatggcagaagttagagaaaggactgaagaagctg
aaaagttttgcaaccctatagggagaacaacaatatcaaacaaccagaca
caccagagctcccaaggactaaatcaccaaccaacgagtacaaatggagc
aacccatgtccccagctacatatttaatagaggatggtcatgttgggcat
gcctgggaggagaggtcctaggtcctgtgtagacttgatggcccagtgta
cattaatgccagggaatggagacaggagtaggtgggggcatgtgggagga
ccctcatagaagcaggcgggaaataatagggggtttctggaggggaaccg
ggaaaggggataacatttgaaatataaataaataaaatatacaaaaaatt
agtcaccaagatatttaagtaaaatggaatattgaaagtgtcttaatcat
acaccaatagccaaggtcctcatttgtacccccccatcctcagtgtaccc
cctcttcctatctttgtaaatgggagcctcatgagcctaataagtcaagc
tatgccttgaatttgcccctttttacatctaaaatttctacatctacagt
ttttacatctaatttctacatttttttacatctaaaatttccttagcaca
attataaaatttacaacttctctcttgctgtccatgcttactatcactta
ttagcgtcaaggatgaatcctataaaaatatgtcctacctttccctgaat
cctctcagactctgagctgcattgttcaacccacaccctgcactgtactc
tggtcatggtctcagcctgactcacaccacaagttcttgactaatcagag
ctttcgaaacttcacctactgatgtatctttttgagttttctatgtgact
tcctaggatctctgcctctgctcatcttctcaaacctcctttggatcctc
acctgtggccaggcagcc
gaattctgtttagatctgttcctcattttttaattggtttatttgtattt
taaaaagtatatggttccttgagttctttatatattttagatactagccc
tctattggatgtggaattggtttaaaaaaatcttttcccattacataggc
tgttacatggtctgattgatggtgccctttgtcttacagaaagttttcaa
atttttgcggtcctgtttattaattcttgatcttagagcctaaactaatg
gtgttctggtcacatagtcttctactgtgccattgactttaagggtagtc
cccattttctattttattatattcagtgtaactagttttatgttgaagtc
tttgaatcatttagagttgaggtttgtgaaaagtactacgtatggatcta
ttttcattcttctacattgagctttctaaatcttctgaatccccacctga
tctttggccatgcagctgcttgctgacatccttgcttaatttgaaaggta
tgactttctctcaatctccctctccctggcaactgctaagatttgcaact
tgcttgactgttattttcctctcaagatctaataaagggccctttctttt
cctaataagtccacttttaattcattttattaataagactaagaactttg
aaaagaaactcagtttctccagtaacatgaacaaccataaagggacatta
aaacgtttctcaggggatacagcaggtgatcttgttccaggactttaggt
gggtaagcacttgctggtgggtcaaacctacagtgaatactctctgaata
agctttctctaggagggattcaatctccaggctttatcactctgtcttgt
ctcagcatataagccttttgaactgactctgtctcctgtgaaggagggaa
aggttcctattttcgcccatccctgcctccctttagtagcgatagagcaa
actatggagtatatatgcaatgcctcctccacctaccctctctgctctgt
caccattcccatgctgcccagtagagcagcccaaagaactgggtatattc
catcctcctcatttccttcagggttccatgcctggattacatcagttctt
aaggaggacctattctcccggagatcctgtttctctcgattcctggctag
ctattagactatatttccaaccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146536638_146537721
seq2: B6Ng01-038C19.b_96_1165 (reverse)

seq1  GGCTGCCTGCCATGTGCTTGCCTGCCACAGGGTGGAGAATCCAAAGGAGG  50
      |||||||||              ||||||||   ||| ||||||||||||
seq2  GGCTGCCTG--------------GCCACAGG--TGAGGATCCAAAGGAGG  34

seq1  TCTGAGAAGATGAGCAGA-GCAGAGAT-CTAGGAAATCACATAGAGAACT  98
      | |||||||||||||||| |||||||| ||||||| ||||||||| ||||
seq2  TTTGAGAAGATGAGCAGAGGCAGAGATCCTAGGAAGTCACATAGAAAACT  84

seq1  CAAAAAGATACATCAGTAGGTGAAGTTTCAAAAGCGCTGATTAGTCAGGA  148
      ||||||||||||||||||||||||||||| ||||| ||||||||||| ||
seq2  CAAAAAGATACATCAGTAGGTGAAGTTTCGAAAGCTCTGATTAGTCAAGA  134

seq1  ACTTGTGGTGTGAGGTCAGGATGAGACCATGACCAGAGTACAGTGCAGGT  198
      ||||||||||||| |||||| |||||||||||||||||||||||||||| 
seq2  ACTTGTGGTGTGA-GTCAGGCTGAGACCATGACCAGAGTACAGTGCAGGG  183

seq1  TGAGGGTTGAACAATGCAGCTCAGAGTCTGAGAGGATTCAGGGAAAGGTA  248
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTTGAACAATGCAGCTCAGAGTCTGAGAGGATTCAGGGAAAGGTA  233

seq1  GGACATATTTTTATAGAATTCATCCTTGATGCTAATAAGTGAGAGGAAGC  298
      |||||||||||||||| |||||||||||| |||||||||||| || ||||
seq2  GGACATATTTTTATAGGATTCATCCTTGACGCTAATAAGTGATAGTAAGC  283

seq1  ATGGACAGCAAGAGAGAAGTTGTAAATTTTATAATTGTGCTAAGGAAATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACAGCAAGAGAGAAGTTGTAAATTTTATAATTGTGCTAAGGAAATT  333

seq1  TTAGATGT-AAAAAATGTAGAAATTAGATGTAAAAACTGTAGATGTAGAA  397
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGTAAAAAAATGTAGAAATTAGATGTAAAAACTGTAGATGTAGAA  383

seq1  ATTTTAGATGTAAAAAGGGGCAAATTCAAGGCATAGCTTGACTTATTAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGATGTAAAAAGGGGCAAATTCAAGGCATAGCTTGACTTATTAGG  433

seq1  TTCATGAGGCTCCCATTTACAAAGATAGGAAGAGGGGGTACACTGAGGAT  497
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGAGGCTCCCATTTACAAAGATAGGAAGAGGGGGTACACTGAGGAT  483

seq1  GGGGGGGTACAAATGAGGACCTTGGCTATTGGTGTATGATTAAGACACTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGTACAAATGAGGACCTTGGCTATTGGTGTATGATTAAGACACTT  533

seq1  TCAATATTCCATTTTAATTATATATCTTGGTGACTAATTTTTTGTATATT  597
      |||||||||||||||| ||| |||||||||||||||||||||||||||||
seq2  TCAATATTCCATTTTACTTAAATATCTTGGTGACTAATTTTTTGTATATT  583

seq1  TTATTTATTTATATTTCAAATATTATCCCCTTTCCCGGTTCCCCTCCAGA  647
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTATTTATTTATATTTCAAATGTTATCCCCTTTCCCGGTTCCCCTCCAGA  633

seq1  AACCCCCTATTACTTCCCGCCTGCTTCTATGAGGGTCCTCCCACATGCCC  697
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AACCCCCTATTATTTCCCGCCTGCTTCTATGAGGGTCCTCCCACATGCCC  683

seq1  CCACCTACTCCTGTCTCCATTCCCTGGCATTAATGTACACTGGGCCATCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTACTCCTGTCTCCATTCCCTGGCATTAATGTACACTGGGCCATCA  733

seq1  AGTCTACACAGGACCTAGGACCTCTCCTCCCAGGCATGCCCAACATGACC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTACACAGGACCTAGGACCTCTCCTCCCAGGCATGCCCAACATGACC  783

seq1  ATCCTCTATTAAATATGTAGCTGGGGACATGGGTTGCTCCATTTGTACTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTATTAAATATGTAGCTGGGGACATGGGTTGCTCCATTTGTACTC  833

seq1  GTTGGTTGGTGATTTAGTCTTTGGGAGCTCTGGTGTGTCTGGTTGTTTGA  897
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTTGGTTGGTGATTTAGTCCTTGGGAGCTCTGGTGTGTCTGGTTGTTTGA  883

seq1  TATTGTTGTTCTCCCTATTGGGTTGCAAACCTTTTCAGCTCCTTCAGTCC  947
      |||||||||||||||||| |||||||||| |||||||||| |||||||||
seq2  TATTGTTGTTCTCCCTATAGGGTTGCAAAACTTTTCAGCTTCTTCAGTCC  933

seq1  TTTCTCTAACTTCTGCCATATGGACCCTGTGTTCAGTCCATTGGTTGGCT  997
      ||||||||||||||||||||||||||| ||| ||||||||||||||||||
seq2  TTTCTCTAACTTCTGCCATATGGACCCAGTGCTCAGTCCATTGGTTGGCT  983

seq1  GCAAGCATCTGCCTTTGTATTTTTTAGGCACTGGCAGAGCCTCTCAGGAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCATCTGCCTTTGTATTTTTTAGGCACTGGCAGAGCCTCTCAGGAG  1033

seq1  ACATCTATATCAGGCTCCTGTCAGCAAGCACTAATTG  1084
      ||| | ||||||||||||||||| |||||||||||||
seq2  ACAGCCATATCAGGCTCCTGTCAACAAGCACTAATTG  1070

seq1: chr4_146461726_146462926
seq2: B6Ng01-038C19.g_66_1239

seq1  GAATTCTGTTTAGATCTGTTCCTCATTTTTTAATTGGTTTATTTGTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTAGATCTGTTCCTCATTTTTTAATTGGTTTATTTGTATTT  50

seq1  TAAAAAGTATATGGTTCCTTGAGTTCTTTATATATTTTAGATACTAGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTATATGGTTCCTTGAGTTCTTTATATATTTTAGATACTAGCCC  100

seq1  TCTATTGGATGTGGAATTGGTTTAAAAAAATCTTTTCCCATTACATAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGGATGTGGAATTGGTTTAAAAAAATCTTTTCCCATTACATAGGC  150

seq1  TGTTATATGGTCTGATTGATGGTGCCCTTTGTCTTACAGAAAGTTTTCAA  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACATGGTCTGATTGATGGTGCCCTTTGTCTTACAGAAAGTTTTCAA  200

seq1  ATTTTTGCGGTCCTGTTTATTAATTCTTGATCTTAGAGCCTAAACTAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGCGGTCCTGTTTATTAATTCTTGATCTTAGAGCCTAAACTAATG  250

seq1  GTGTTCTGGTCACATAGTCTTCTACTGTGCCATTGACTTTAAGGGTAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTGGTCACATAGTCTTCTACTGTGCCATTGACTTTAAGGGTAGTC  300

seq1  CCCATTTTCTATTTTATTATATTCAGTGTAACTAGTTTTATGTTGAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTCTATTTTATTATATTCAGTGTAACTAGTTTTATGTTGAAGTC  350

seq1  TTTGAATCATTTAGAGTTAAGGTTTGTGAAAAGTACTACGTATGGATCTA  400
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTGAATCATTTAGAGTTGAGGTTTGTGAAAAGTACTACGTATGGATCTA  400

seq1  TTTTCATTCTTCTACATTGAGCTTTCTAAATCTTCTGAATCCCCACCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTCTTCTACATTGAGCTTTCTAAATCTTCTGAATCCCCACCTGA  450

seq1  TCTTTGGCCATGCAGCTGCTTGCTGACATCCTTGCTTAATTTGAAAGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGCCATGCAGCTGCTTGCTGACATCCTTGCTTAATTTGAAAGGTA  500

seq1  TGACTTTCTCTCAATCTCCCTCTCCCTGGCAACTGCTAAGATTTGTAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGACTTTCTCTCAATCTCCCTCTCCCTGGCAACTGCTAAGATTTGCAACT  550

seq1  TGCTTGACTGTTATTTTCCTCTCAAGATCTAATAAAGGGCCCTTTCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGACTGTTATTTTCCTCTCAAGATCTAATAAAGGGCCCTTTCTTTT  600

seq1  CCTAATAAGTCCACTTTTAATTCATTTTATTAATAAGACTAAGAACTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATAAGTCCACTTTTAATTCATTTTATTAATAAGACTAAGAACTTTG  650

seq1  AAAAGAAACTCAGTTTCTCCAGTAACATGAACAACCATAAAGGGACATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAACTCAGTTTCTCCAGTAACATGAACAACCATAAAGGGACATTA  700

seq1  AAACGTTTCTCAGGGGATACAGCAGGTGATCTTGTTCCAGGACTTTAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTTTCTCAGGGGATACAGCAGGTGATCTTGTTCCAGGACTTTAGGT  750

seq1  GGGTAAGCACTTGCTGGTGGGTCAAACCTACAGTGAATACTCTCTGAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGCACTTGCTGGTGGGTCAAACCTACAGTGAATACTCTCTGAATA  800

seq1  AGCTTTCTCTAGGAGGGATTCAATCTCCAGGCTTTATCACTCTGTCTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTCTAGGAGGGATTCAATCTCCAGGCTTTATCACTCTGTCTTGT  850

seq1  CTCAGGCATATAAGCCTTTTGAACTGACTCTGTTTCCTGTGAAGGAGGGA  900
      |||| |||||||||||||||||||||||||||| ||||||||||||||| 
seq2  CTCA-GCATATAAGCCTTTTGAACTGACTCTGTCTCCTGTGAAGGAGGG-  898

seq1  AAAGGTTCCTATTTTCGCCCATCCCTGCCTCCCTTTAGTAGCGATAAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAAGGTTCCTATTTTCGCCCATCCCTGCCTCCCTTTAGTAGCGAT-AGAG  947

seq1  CAAACTATGGAGTATATATGCAATGCCTCCCTCCACCCTACCCTCTCTGC  1000
      |||||||||||||||||||||||||||| |||||| ||||||||||||||
seq2  CAAACTATGGAGTATATATGCAATGCCT-CCTCCA-CCTACCCTCTCTGC  995

seq1  TCTGTCACCATTCCCCATGCTGCCCCAGTAGAGCAGCACAAAGTACTGGG  1050
      |||||||||||| ||||||||| |||||||||||||| ||||| ||||||
seq2  TCTGTCACCATT-CCCATGCTG-CCCAGTAGAGCAGCCCAAAGAACTGGG  1043

seq1  TATATTTCCTATTCTTCCTCATTTCCTTCAGTGTTTCCATTGCCTTGGAT  1100
      |||||| |    || |||||||||||||||| | ||||| |||| |||||
seq2  TATATTCC---ATCCTCCTCATTTCCTTCAG-GGTTCCA-TGCC-TGGAT  1087

seq1  TATCTTCATGTTCTTTATGGTATGGACCTCATTCTCGTGGATGATTCCTT  1150
      || | ||| |||||| | |    |||||| ||||||  ||| |||  | |
seq2  TA-CATCA-GTTCTTAAGG---AGGACCT-ATTCTCCCGGA-GAT--CCT  1128

seq1  GTTTCCTTCTGATTCACTGCTTAGCTATTTTAGACATATATTTCCAACCA  1200
      |||||  || ||||| |||  ||||||  |||||| ||||||||||||||
seq2  GTTTCTCTC-GATTC-CTGGCTAGCTA--TTAGAC-TATATTTCCAACCA  1173

seq1  C  1201
      |
seq2  C  1174