BAC Information

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BAC

Clone NameB6Ng01-038F01
Chromosome4 (Build37)
Map Location 133,396,607 - 133,576,176
singlet/doubletdoublet
Overlap geneRps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28
Upstream genePpp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a
Downstream geneAim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038F01.bB6Ng01-038F01.g
ACCDH865909DH865910
length768447
definitionDH865909|Mus musculus domesticus DNA, BAC clone: B6Ng01-038F01, 5' end.DH865910|Mus musculus domesticus DNA, BAC clone: B6Ng01-038F01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,575,410 - 133,576,176)(133,396,607 - 133,397,059)
sequence
gaattcaggataagctgatgcccctgaaagcaggctctgtccctttaaat
gggttgtagctgtgggggaggggaactgaccggagctggcattgtccagt
ttgaactgagcaccggaagtgaaggggcagggccagggccgtgcactgag
ccccgggccattgtccatctctgaccagggcagtggccacccctctggtc
caccctctttatcttctagtagggagtttacctctttaaatgagaagcct
ctctctatccagtcttttcaccagtcatactacccgaagggtagctcaat
ttaggatggtgactgagaacaggagggtctgggaattagagtgtcccggg
tcttggaggaagtgcctccacccaccaatctattctcttccaccaacgga
tgggacaggacgggacgcggcaggcaggggcccgatgagaacacagctac
cacagagggcattcttcgaggtttccacatgctctctcagggagctgtac
ctggaagcaactttaggtgtaggcttaggagggagcgaaggactctttgc
acagaatcaactaggagcttgtttctcactgggacaaacccagagaaact
gttgttgaaatttggagattgaggcatccagtagcacccagagacaggcc
gagtttgagaggcagcacctaggttaagacagatcagctcggtggggtct
ccagccgcttccttgcacccctatcccggctttcctaatgttcagaactc
caggtctatctaagcaca
cagtcctgacccacagaggacgctctgcagctacctgtaagatctgaggt
ttagaggccagaagactgcgtaagaaccccaactctccgggcgtggtggc
ggatgcctttaatcccagcactcgggaggcagaggcaggtggatttctga
cttcgaggccaacctggtctacaaagtgagttccagggcagccagggcta
tacagagaaaccctgtctcaaaaaaacaaacaaaaacaaaacaaaacaaa
acaaaacaaaacaaaacacaacccccactcaagttttacagttagtctct
acttgaatgcccctccctcagaagcccctgcagatgccctgtagttaatg
ctccatagcaacagtcagagtgactggacccagctaaatccagccccagg
gagcgtttcctgccaggggatagtggccacaggcccttcccagatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_133575410_133576176
seq2: B6Ng01-038F01.b_32_799 (reverse)

seq1  TGTGCTTAGATAGACCTGGAGTTCTGGACATTAGG-AAGCCGGGATAGGG  49
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  TGTGCTTAGATAGACCTGGAGTTCTGAACATTAGGAAAGCCGGGATAGGG  50

seq1  GTGCAAGGAAGCGGCTGGAGACCCCACCGAGCTGATCTGTCTTAACCTAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGGAAGCGGCTGGAGACCCCACCGAGCTGATCTGTCTTAACCTAG  100

seq1  GTGCTGCCTCTCAAACTCGGCCTGTCTCTGGGTGCTACTGGATGCCTCAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCCTCTCAAACTCGGCCTGTCTCTGGGTGCTACTGGATGCCTCAA  150

seq1  TCTCCAAATTTCAACAACAGTTTCTCTGGGTTTGTCCCAGTGAGAAACAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAATTTCAACAACAGTTTCTCTGGGTTTGTCCCAGTGAGAAACAA  200

seq1  GCTCCTAGTTGATTCTGTGCAAAGAGTCCTTCGCTCCCTCCTAAGCCTAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTAGTTGATTCTGTGCAAAGAGTCCTTCGCTCCCTCCTAAGCCTAC  250

seq1  ACCTAAAGTTGCTTCCAGGTACAGCTCCCTGAGAGAGCATGTGGAAACCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAAGTTGCTTCCAGGTACAGCTCCCTGAGAGAGCATGTGGAAACCT  300

seq1  CGAAGAATGCCCTCTGTGGTAGCTGTGTTCTCATCGGGCCCCTGCCTGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGAATGCCCTCTGTGGTAGCTGTGTTCTCATCGGGCCCCTGCCTGCC  350

seq1  GCGTCCCGTCCTGTCCCATCCGTTGGTGGAAGAGAATAGATTGGTGGGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCCCGTCCTGTCCCATCCGTTGGTGGAAGAGAATAGATTGGTGGGTG  400

seq1  GAGGCACTTCCTCCAAGACCCGGGACACTCTAATTCCCAGACCCTCCTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACTTCCTCCAAGACCCGGGACACTCTAATTCCCAGACCCTCCTGT  450

seq1  TCTCAGTCACCATCCTAAATTGAGCTACCCTTCGGGTAGTATGACTGGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTCACCATCCTAAATTGAGCTACCCTTCGGGTAGTATGACTGGTG  500

seq1  AAAAGACTGGATAGAGAGAGGCTTCTCATTTAAAGAGGTAAACTCCCTAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTGGATAGAGAGAGGCTTCTCATTTAAAGAGGTAAACTCCCTAC  550

seq1  TAGAAGATAAAGAGGGTGGACCAGAGGGGTGGCCACTGCCCTGGTCAGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGATAAAGAGGGTGGACCAGAGGGGTGGCCACTGCCCTGGTCAGAG  600

seq1  ATGGACAATGGCCCGGGGCTCAGTGCACGGCCCTGGCCCTGCCCCTTCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACAATGGCCCGGGGCTCAGTGCACGGCCCTGGCCCTGCCCCTTCAC  650

seq1  TTCCGGTGCTCAGTTCAAACTGGACAATGCCAGCTCCGGTCAGTTCCCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGGTGCTCAGTTCAAACTGGACAATGCCAGCTCCGGTCAGTTCCCCT  700

seq1  CCCCCACAGCTACAACCCATTTAAAGGGACAGAGCCTGCTTTCAGGGGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACAGCTACAACCCATTTAAAGGGACAGAGCCTGCTTTCAGGGGCA  750

seq1  TCAGCTTATCCTGAATTC  767
      ||||||||||||||||||
seq2  TCAGCTTATCCTGAATTC  768

seq1: chr4_133396607_133397059
seq2: B6Ng01-038F01.g_68_520

seq1  GAATTCCAGTCCTGACCCACAGAGGACGCTCTGCAGCTACCTGTAAGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTCCTGACCCACAGAGGACGCTCTGCAGCTACCTGTAAGATC  50

seq1  TGAGGTTTAGAGGCCAGAAGACTGCGTAAGAACCCCAACTCTCCGGGCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTTAGAGGCCAGAAGACTGCGTAAGAACCCCAACTCTCCGGGCGT  100

seq1  GGTGGCGGATGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCGGATGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGAT  150

seq1  TTCTGACTTCGAGGCCAACCTGGTCTACAAAGTGAGTTCCAGGGCAGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTTCGAGGCCAACCTGGTCTACAAAGTGAGTTCCAGGGCAGCCA  200

seq1  GGGCTATACAGAGAAACCCTGTCTCAAAAAAACAAACAAAAACAAAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTATACAGAGAAACCCTGTCTCAAAAAAACAAACAAAAACAAAACAA  250

seq1  AACAAAACAAAACAAAACAAAACACAACCCCCACTCAAGTTTTACAGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAACAAAACAAAACACAACCCCCACTCAAGTTTTACAGTTA  300

seq1  GTCTCTACTTGAATGCCCCTCCCTCAGAAGCCCCTGCAGAGGCCCTGTAG  350
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTCTCTACTTGAATGCCCCTCCCTCAGAAGCCCCTGCAGATGCCCTGTAG  350

seq1  TTAATGCTCCATAGCAACAGTCAGAGTGACTGGACCCAGCTAAATCCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCTCCATAGCAACAGTCAGAGTGACTGGACCCAGCTAAATCCAGC  400

seq1  CCCAGGGAGCGTTTCCTGCCAGGGGAGAGTGGCCACAGGCCCTTCCCAGA  450
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCCAGGGAGCGTTTCCTGCCAGGGGATAGTGGCCACAGGCCCTTCCCAGA  450

seq1  TAC  453
      |||
seq2  TAC  453