BAC Information

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BAC

Clone NameB6Ng01-038F19
Chromosome4 (Build37)
Map Location 77,226,632 - 77,326,516
singlet/doubletdoublet
Overlap genenone
Upstream genePtprd, LOC667858, LOC667862
Downstream geneLOC100039974, LOC100039996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038F19.bB6Ng01-038F19.g
ACCDH865945DH865946
length1,1271,210
definitionDH865945|Mus musculus domesticus DNA, BAC clone: B6Ng01-038F19, 5' end.DH865946|Mus musculus domesticus DNA, BAC clone: B6Ng01-038F19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,325,372 - 77,326,516)(77,226,632 - 77,227,868)
sequence
gaattccatagccactatgctccaagatctccatatcaagacataggtca
gaaacttctatctctcagcctccagattaggatcactgatgagtcttcca
attctggattgtagttcattccagatattgtcaagttgacaaccagggat
agccactatagcagctgtgataaaactgtgagctatttaaatatagctta
acttcattcttgcagaaagcaatagcagattcttgaattatcacacatag
tgcccagtatgtaatacttaaaagtaaattaatactgtttccaagagaaa
aaataaatacaactattaaagagaaacgataaagtggattgtgtgagatc
tgaataagtgacaaacaaaaaagttaaactggggggagagtagatgaatc
ttgggttgagggaatccatggctcttgtagaggatagttcaattcccagc
tccccattgtgaaattcacagactcctataactccagcttcagaagtctt
cttggttccaatggtactgtactcatgggtacatacctacataaaaaggg
tataaataattccaaatttaagataattttgaatgatcctaatatttcca
tttgtaatatttttgtttcaaaaataaaaagaaatgcaattggtttacct
aattgattaaaagtgtatcaacaatgatctcagtcaataacctgacttat
tattttaagttttattttataatggaaacaagtttttttttttaatcttt
gaacatattttcagtatttgagaccaggtaattaagtatgcaaaatcttt
tagggtgttgttactcagatttatttaattcttgggttttttttgttgct
gttgttttgtttttaaatgtccctgttgtgctttgaatcaaaatgtgtgt
ctgtctccagaaattttaaaccattttgagatcaattcatatgatatcaa
aagacaactgttattctcagttgtcataggcaagtgaatgagtgacaaat
gtattttttgattcagaaaaaaaacatttctaagattcacagattagaaa
atttcaaatagaggggtttattaggatggtagagaaattccactgatgat
gatcagtgattgctcttctacttactt
gaattcaacctaatgttgttacagtaaaacaaaaaagaacaaagacactc
tgcaagacacatacatgtgacaatagaaagtcatagatcttgagatctct
ccttgacatcttaaaacactaaatgataggaaggcgattcacagtggaga
gaggattgtgagaatagtttcactattcaggtagaagattaaacccagtt
ctagcttcaagaaggagatgttaggagagcctacatatattttgtgacaa
atgaaagaaaaatatacaaagtgcaatgttgccaaacttcacattcactg
aagattgctaagtttttaaatatgtatacatttagattttgaaatagaat
ataataataacttacttttaagacttacatgtgttttatccccatgattt
tcccagcagctctgttagttgtagattatcactattccctatcaaatgaa
ggctaatcagtagcctgtataacacatacatgctgtttatacctcacaga
cagatatatattctctactcacaaatcaattcaaaaattcacattattct
atccaaacctggacataaagtttgaaagattcaatcatatcttgatcatc
tcctttgttaagaaaagtaggcggtacactagctgacctagtggcacttt
gttgacaattttcctttccccaatgttattatctcatggtttccacttag
ctcctccctacacatcctctcaagtgtgcttgtctgagcaaggacagtat
gatgtttcagatgaactagagtaccatttcactatgccctttgctttatc
taattgttttccttcaatcactttactgagttatctgagctcttggagaa
catgatgtactcagcacacacaggaatcctcttggcatgattttgtcctt
cacttgctcatgccagagtatgctggataacatcatagctcattcagttt
tggtatggcaatggacctcattcatatctgtagaaatatttctgtgtatt
tgcatatatgttgccaatagacatctattcgttactgaaaagcttaagaa
ggttgcatcagtggcttggcctgttcctcttggtcttgaccctttgacaa
attatgaagaatggtttccgaagatgcctgaaactatcgcctcacaaata
tactaaatgattctactactggttgtccatcagtctctcagggaactctg
gattagcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_77325372_77326516
seq2: B6Ng01-038F19.b_50_1176 (reverse)

seq1  AAGTAAGT---AGAGCCATCACCTGAATCTATTCATCTATGTTGGATTTT  47
      ||||||||   ||||| |||| ||||      |||||     |||| |||
seq2  AAGTAAGTAGAAGAGCAATCA-CTGA------TCATCATCAGTGGAATTT  43

seq1  CTCTA-CATCCTATATAAACCACTCTATTTTGGAAATATTTCTTAATCTT  96
      ||||| ||||||| ||||||| ||||||||  ||||| |||| ||||| |
seq2  CTCTACCATCCTA-ATAAACCCCTCTATTT--GAAAT-TTTC-TAATC-T  87

seq1  GTGAATCTGTAGAAATTGTTTTTTTTCTGGATTCATAAAATACATTTGTC  146
      |||||||| |||||| |||||||||||| || ||| ||||||||||||| 
seq2  GTGAATCT-TAGAAA-TGTTTTTTTTCT-GAATCAAAAAATACATTTGT-  133

seq1  CACTTCATTCACTTGCCTATGACAACTGAGAATAACAGTTTGTCTTTTGA  196
      ||| |||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAC-TCATTCACTTGCCTATGACAACTGAGAATAACAG-TTGTCTTTTGA  181

seq1  TATCATATTGAATTTGATCTCAAAATGGTTTAAAATTTCTTGGAGACAGA  246
      ||||||| |||| |||||||||||||||||||||||||| ||||||||||
seq2  TATCATA-TGAA-TTGATCTCAAAATGGTTTAAAATTTC-TGGAGACAGA  228

seq1  CACACATTTTGATTCAAAGCACAACAGGGACATTTAAAAACAAAACAACA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATTTTGATTCAAAGCACAACAGGGACATTTAAAAACAAAACAACA  278

seq1  GCAACAAAAAAAACCCAAGAATTAAATAAATCTGAGTAACAACACCCTAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAAAAAAAACCCAAGAATTAAATAAATCTGAGTAACAACACCCTAA  328

seq1  AAGATTTTGCATACTTAATTACCTGGTCTCAAATACTGAAAATATGTTCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTGCATACTTAATTACCTGGTCTCAAATACTGAAAATATGTTCA  378

seq1  AAGATTAAAAAAAAAAACTTGTTTCCATTATAAAATAAAACTTAAAATAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAAAAAAAAAAACTTGTTTCCATTATAAAATAAAACTTAAAATAA  428

seq1  TAAGTCAGGTTATTGACTGAGATCATTGTTGATACACTTTTAATCAATTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCAGGTTATTGACTGAGATCATTGTTGATACACTTTTAATCAATTA  478

seq1  GGTAAACCAATTGCATTTCTTTTTATTTTTGAAACAAAAATATTACAAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAACCAATTGCATTTCTTTTTATTTTTGAAACAAAAATATTACAAAT  528

seq1  GGAAATATTAGGATCATTCAAAATTATCTTAAATTTGGAATTATTTATAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATATTAGGATCATTCAAAATTATCTTAAATTTGGAATTATTTATAC  578

seq1  CCTTTTTATGTAGGTATGTACCCATGAGTACAGTACCATTGGAACCAAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTATGTAGGTATGTACCCATGAGTACAGTACCATTGGAACCAAGA  628

seq1  AGACTTCTGAAGCTGGAGTTATAGGAGTCTGTGAATTTCACAATGGGGAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCTGAAGCTGGAGTTATAGGAGTCTGTGAATTTCACAATGGGGAG  678

seq1  CTGGGAATTGAACTATCCTCTACAAGAGCCATGGATTCCCTCAACCCAAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAATTGAACTATCCTCTACAAGAGCCATGGATTCCCTCAACCCAAG  728

seq1  ATTCATCTACTCTCCCCCCAGTTTAACTTTTTTGTTTGTCACTTATTCAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCTACTCTCCCCCCAGTTTAACTTTTTTGTTTGTCACTTATTCAG  778

seq1  ATCTCACACAATCCACTTTATCGTTTCTCTTTAATAGTTGTATTTATTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACACAATCCACTTTATCGTTTCTCTTTAATAGTTGTATTTATTTT  828

seq1  TTCTCTTGGAAACAGTATTAATTTACTTTTAAGTATTACATACTGGGCAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTGGAAACAGTATTAATTTACTTTTAAGTATTACATACTGGGCAC  878

seq1  TATGTGTGATAATTCAAGAATCTGCTATTGCTTTCTGCAAGAATGAAGTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGATAATTCAAGAATCTGCTATTGCTTTCTGCAAGAATGAAGTT  928

seq1  AAGCTATATTTAAATAGCTCACAGTTTTATCACAGCTGCTATAGTGGCTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATATTTAAATAGCTCACAGTTTTATCACAGCTGCTATAGTGGCTA  978

seq1  TCCCTGGTTGTCAACTTGACAATATCTGGAATGAACTACAATCCAGAATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGTTGTCAACTTGACAATATCTGGAATGAACTACAATCCAGAATT  1028

seq1  GGAAGACTCATCAGTGATCCTAATCTGGAGGCTGAGAGATAGAAGTTTCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACTCATCAGTGATCCTAATCTGGAGGCTGAGAGATAGAAGTTTCT  1078

seq1  GACCTATGTCTTGATATGGAGATCTTGGAGCATAGTGGCTATGGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTATGTCTTGATATGGAGATCTTGGAGCATAGTGGCTATGGAATTC  1127

seq1: chr4_77226632_77227868
seq2: B6Ng01-038F19.g_65_1274

seq1  GAATTCAACCTAATGTTGTTACAGTAAAACAAAAAAGAACAAAGACACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTAATGTTGTTACAGTAAAACAAAAAAGAACAAAGACACTC  50

seq1  TGCAAGACACATACATGTGACAATAGAAAGTCATAGATCTTGAGATCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGACACATACATGTGACAATAGAAAGTCATAGATCTTGAGATCTCT  100

seq1  CCTTGACATCTTAAAACACTAAATGATAGGAAGGCGATTCACAGTGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGACATCTTAAAACACTAAATGATAGGAAGGCGATTCACAGTGGAGA  150

seq1  GAGGATTGTGAGAATAGTTTCACTATTCAGGTAGAAGATTAAACCCAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTGTGAGAATAGTTTCACTATTCAGGTAGAAGATTAAACCCAGTT  200

seq1  CTAGCTTCAAGAAGGAGATGTTAGGAGAGCCTACATATATTTTGTGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTCAAGAAGGAGATGTTAGGAGAGCCTACATATATTTTGTGACAA  250

seq1  ATGAAAGAAAAATATACAAAGTGCAATGTTGCCAAACTTCACATTCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGAAAAATATACAAAGTGCAATGTTGCCAAACTTCACATTCACTG  300

seq1  AAGATTGCTAAGTTTTTAAATATGTATACATTTAGATTTTGAAATAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGCTAAGTTTTTAAATATGTATACATTTAGATTTTGAAATAGAAT  350

seq1  ATAATAATAACTTACTTTTAAGACTTACATGTGTTTTATCCCCATGATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATAACTTACTTTTAAGACTTACATGTGTTTTATCCCCATGATTT  400

seq1  TCCCAGCAGCTCTGTTAGTTGTAGATTATCACTATTCCCTATCAAATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCAGCTCTGTTAGTTGTAGATTATCACTATTCCCTATCAAATGAA  450

seq1  GGCTAATCAGTAGCCTGTATAACACATACATGCTGTTTATACCTCACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATCAGTAGCCTGTATAACACATACATGCTGTTTATACCTCACAGA  500

seq1  CAGATATATATTCTCTACTCACAAATCAATTCAAAAATTCACATTATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATATATTCTCTACTCACAAATCAATTCAAAAATTCACATTATTCT  550

seq1  ATCCAAACCTGGACATAAAGTTTGAAAGATTCAATCATATCTTGATCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAACCTGGACATAAAGTTTGAAAGATTCAATCATATCTTGATCATC  600

seq1  TCCTTTGTTAAGAAAAGTAGGCGGTACACTAGCTGACCTAGTGGCACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGTTAAGAAAAGTAGGCGGTACACTAGCTGACCTAGTGGCACTTT  650

seq1  GTTGACAATTTTCCTTTCCCCAATGTTATTATCTCATGGTTTCCACTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACAATTTTCCTTTCCCCAATGTTATTATCTCATGGTTTCCACTTAG  700

seq1  CTCCTCCCTACACATCCTCTCAAGTGTGCTTGTCTGAGCAAGGACAGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCTACACATCCTCTCAAGTGTGCTTGTCTGAGCAAGGACAGTAT  750

seq1  GATGTTTCAGATGAACTAGAGTACCATTTCACTATGCCCTTTGCTTTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTCAGATGAACTAGAGTACCATTTCACTATGCCCTTTGCTTTATC  800

seq1  TAATTGTTTTCCTTCAATCACTTTACTGAGTTATCTGAGCTCTTGGAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTTTTCCTTCAATCACTTTACTGAGTTATCTGAGCTCTTGGAGAA  850

seq1  CATGATGTACTCAGCACACACAGGAATCCTCTTGGCATGATTTTGTCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGTACTCAGCACACACAGGAATCCTCTTGGCATGATTTTGTCCTT  900

seq1  CACTTGCTCATGCCAGAGGTATGCTGGATAACATCATAGGCTCATTCAGT  950
      ||||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  CACTTGCTCATGCCAGA-GTATGCTGGATAACATCATA-GCTCATTCAGT  948

seq1  TTTGGTATGGCAATGGACCTCATTCATATCTGTAAGAAATATTTCTTGTG  1000
      ||||||||||||||||||||||||||||||||| ||||||||||| ||||
seq2  TTTGGTATGGCAATGGACCTCATTCATATCTGT-AGAAATATTTC-TGTG  996

seq1  TATTTGCATATATGTTGCCAAATAGACATCTATTCGTTACTGAAAAAGCC  1050
      ||||||||||||||||||| |||||||||||||||||||||| |||||| 
seq2  TATTTGCATATATGTTGCC-AATAGACATCTATTCGTTACTG-AAAAGCT  1044

seq1  TAGAGAGGTTGCATCAGT-GCTTGGCCTGTTCCTCTTGGTCTTTGACACT  1099
      ||   ||||||||||||| |||||||||||||||||||||| ||||| ||
seq2  TAAGAAGGTTGCATCAGTGGCTTGGCCTGTTCCTCTTGGTC-TTGACCCT  1093

seq1  TTGACAAATTATTGAAGAATGGTTTTCAGGAGGATGGCTGAAACTATCGG  1149
      ||||||||||| ||||||||||||| |  || |||| |||||||||||| 
seq2  TTGACAAATTA-TGAAGAATGGTTTCC--GAAGATGCCTGAAACTATCGC  1140

seq1  CTTCAACAAATAATACTTAAAATGATTTCATACATACTTTGTGTTTTGTC  1199
      ||   |||||| |||||  ||||||||   ||| ||||       |||||
seq2  CT--CACAAAT-ATACT--AAATGATT--CTAC-TACT-----GGTTGTC  1177

seq1  ATTCTAGTCTCTCAAGGAAAATCATTGAGATTAGCATT  1237
        || ||||||||| ||||   |  || ||||||||||
seq2  CATC-AGTCTCTCAGGGAA---CTCTG-GATTAGCATT  1210