BAC Information

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BAC

Clone NameB6Ng01-038M17
Chromosome4 (Build37)
Map Location 61,869,778 - 61,997,641
singlet/doubletdoublet
Overlap geneSlc31a2, Fkbp15
Upstream geneLOC100039089, LOC667239, LOC100039116, LOC667242, LOC100039150, LOC100039019, LOC100039177, LOC621093, LOC100039206, LOC621127, LOC100039228, LOC384021, LOC100039247, LOC667278, Mup5, LOC435785, LOC667295, LOC100039305, LOC546832, OTTMUSG00000007485, Mup3, LOC100039345, OTTMUSG00000000231, Zfp37
Downstream geneSlc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3, Zfp618, Ambp, Kif12, Col27a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038M17.bB6Ng01-038M17.g
ACCDH866249DH866250
length1,052986
definitionDH866249|Mus musculus domesticus DNA, BAC clone: B6Ng01-038M17, 5' end.DH866250|Mus musculus domesticus DNA, BAC clone: B6Ng01-038M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,996,593 - 61,997,641)(61,869,778 - 61,870,768)
sequence
gaattctttgttcacgtgtattttatctgatgagcatttcctcacttctg
acgtctctagggcttagaggacgggctactgggcatgaagaaaggaggaa
agcgcttaattatcactccttcagcctgcgctgctggctctgaaggagta
ataggctggactcagccaacagactccatcctggtgtttgaggtagaagt
taggcgggtaagtgaaactggcctgtgttcttataaatcagattctgaag
atatagctagcttttaaaatagaagtggtagggtaggacgaaggttggga
aagttctttccttcaggcatgaggtctgagttcagtccccaggacgtaca
taaacatactgacacggtggtgcagatttgtattgaccacacatatttgt
atacatagccatgcgcttgcgcgcgcgcgcacacacacacacacacacac
tcatgcttcaaagctttagaagaaatgatgaatgattttctctgaaaatg
gcattggagttaagcatcttgtcttttttcaatgtataaaaatcttgtca
gtaaggtgtggtgggacatatttttaatcccagcacttgggaggcagaag
cagtcagatattaatgagtttatggccaacttggactactaatgagtttc
aggccagccagggtcacacagagagactctacctttgaatatgttttcta
tactaaaatagcaacaacttttggttagtttatagtattccttctccaaa
atgaccctgatattattaggttgaatggtgctggtgactataaaccataa
aaacacagtacaaaataatgaattttatggctatttctatatagtcgtta
tgtttgttcacaagcagagaggtaccctccttatggggagaccggtttct
cttgttggtcatctaatctacagtggcatgtccccagatgcctttttttc
taaacatagattcctttaagtttctttgagctcaggaaaccatgggtaat
gatagcaaactattttgaaactatttgaatactaacttgtaaacatagca
ag
gaattacttttccaaagggttttccagttgcggttgccggggaaacccgg
gaagcaggatgaggaatccagaaagagaaagaaaccagaaaagctggtct
agactagtaacgttgacttacagagagaagacatttatcgctaagacata
gcaaaaattctttggattactgttataatggagaggggagggaagaggcc
gacagcgaacacggcactcctggtgagagcccagcactggtgaagacatt
tcctcagaactgcacagctgttaaaatgacttctcagtgcactacttaac
aagctcattgcgtttactcaacagtttttatgtagaatttttgatatgta
aatatgtacaatccatgtgcaggatgaagaacaggactacacaaccttca
tccccctcctcagtttggattcgcagtagggcagagatggtgagattact
gcaaatgcgtggtttctcattgattgactcaacacccctattggaaaatg
gatccagtgaggagactgcctgcaatcccattacgcaggaagcaggggca
gtgttttcaagactagccttgttatatagagtgaacttgaggttagcgtg
agctatccaaagcacttgtctcaaaagggcaaaataaaataagggttttt
atagctttattcaatgtacagcgggagaaagaacagaactgatttgtggg
ggccagagtataaatataagagttagttctctctttatggggatccaggg
acttcactccgttctccagacttacctaccacaatggttgctatttacac
tccgagccttctcacaggcactaacatttaagctgttgctgtttttcctg
aagtccccttctgaaaacagaacctaagggccttgtgcttactaggcaac
taactactctgtactgagctaaagcccaaagcccaatttaaaacaaacaa
cctgttttgcattgcgccccgccccgtcccaccccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_61996593_61997641
seq2: B6Ng01-038M17.b_48_1098 (reverse)

seq1  TTGCTTATGTTTACAAGTTAGTAT--CAATAGTTTCAAAATAGTTTGCTA  48
      |||| |||||||||||||||||||   |||||||||||||||||||||||
seq2  TTGC-TATGTTTACAAGTTAGTATTCAAATAGTTTCAAAATAGTTTGCTA  49

seq1  TCATTACCCATGGTTTCCTTGAGCTCAAAGAAAACTTAAGGGAATCTATG  98
      |||||||||||||||||| ||||||||||| |||||||| ||||||||||
seq2  TCATTACCCATGGTTTCC-TGAGCTCAAAG-AAACTTAAAGGAATCTATG  97

seq1  TTTAGAAAAAAAAGGCATCTGGGGACATGCCACTGTAAGATTAGATGACC  148
      ||||| |||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTAG-AAAAAAAGGCATCTGGGGACATGCCACTGT-AGATTAGATGACC  145

seq1  CAACAGAGAAACCGGTCT-CCCATTAGGAGGGTACCTCTCTGC-TGTG-A  195
       |  |||||||||||||| ||||| |||||||||||||||||| |||| |
seq2  AACAAGAGAAACCGGTCTCCCCATAAGGAGGGTACCTCTCTGCTTGTGAA  195

seq1  CAAACATAACGACTATATAGAAATAGCCATAAAATTCATTA-TTTGTACT  244
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAAACATAACGACTATATAGAAATAGCCATAAAATTCATTATTTTGTACT  245

seq1  GTG-TTTTATGGTTTATAGTCACCAGCACCATTCAACCTAATAATATCAG  293
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTATGGTTTATAGTCACCAGCACCATTCAACCTAATAATATCAG  295

seq1  GGTCATTTTGGAGAAGGAATACTATAAACTAACCAAAAGTTGTTGCTATT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTTTGGAGAAGGAATACTATAAACTAACCAAAAGTTGTTGCTATT  345

seq1  TTAGTATAGAAAACATATTCAAAGGTAGAGTCTCTCTGTGTGACCCTGGC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATAGAAAACATATTCAAAGGTAGAGTCTCTCTGTGTGACCCTGGC  395

seq1  TGGCCTGAAACTCATTAGTAGTCCAAGTTGGCCATAAACTCATTAATATC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGAAACTCATTAGTAGTCCAAGTTGGCCATAAACTCATTAATATC  445

seq1  TGACTGCTTCTGCCTCCCAAGTGCTGGGATTAAAAATATGTCCCACCACA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCTTCTGCCTCCCAAGTGCTGGGATTAAAAATATGTCCCACCACA  495

seq1  CCTTACTGACAAGATTTTTATACATTGAAAAAAGACAAGATGCTTAACTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACTGACAAGATTTTTATACATTGAAAAAAGACAAGATGCTTAACTC  545

seq1  CAATGCCATTTTCAGAGAAAATCATTCATCATTTCTTCTAAAGCTTTGAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCCATTTTCAGAGAAAATCATTCATCATTTCTTCTAAAGCTTTGAA  595

seq1  GCATGAGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCAAGCGCATGGCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCAAGCGCATGGCT  645

seq1  ATGTATACAAATATGTGTGGTCAATACAAATCTGCACCACCGTGTCAGTA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATACAAATATGTGTGGTCAATACAAATCTGCACCACCGTGTCAGTA  695

seq1  TGTTTATGTACGTCCTGGGGACTGAACTCAGACCTCATGCCTGAAGGAAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATGTACGTCCTGGGGACTGAACTCAGACCTCATGCCTGAAGGAAA  745

seq1  GAACTTTCCCAACCTTCGTCCTACCCTACCACTTCTATTTTAAAAGCTAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTCCCAACCTTCGTCCTACCCTACCACTTCTATTTTAAAAGCTAG  795

seq1  CTATATCTTCAGAATCTGATTTATAAGAACACAGGCCAGTTTCACTTACC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCTTCAGAATCTGATTTATAAGAACACAGGCCAGTTTCACTTACC  845

seq1  CGCCTAACTTCTACCTCAAACACCAGGATGGAGTCTGTTGGCTGAGTCCA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTAACTTCTACCTCAAACACCAGGATGGAGTCTGTTGGCTGAGTCCA  895

seq1  GCCTATTACTCCTTCAGAGCCAGCAGCGCAGGCTGAAGGAGTGATAATTA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATTACTCCTTCAGAGCCAGCAGCGCAGGCTGAAGGAGTGATAATTA  945

seq1  AGCGCTTTCCTCCTTTCTTCATGCCCAGTAGCCCGTCCTCTAAGCCCTAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTTTCCTCCTTTCTTCATGCCCAGTAGCCCGTCCTCTAAGCCCTAG  995

seq1  AGACGTCAGAAGTGAGGAAATGCTCATCAGATAAAATACACGTGAACAAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGTCAGAAGTGAGGAAATGCTCATCAGATAAAATACACGTGAACAAA  1045

seq1  GAATTC  1049
      ||||||
seq2  GAATTC  1051

seq1: chr4_61869778_61870768
seq2: B6Ng01-038M17.g_76_1061

seq1  GAATTACTTTTCCAAAGGGTTTTCCAGTTGCGGTTGCCGGGGAAACCCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACTTTTCCAAAGGGTTTTCCAGTTGCGGTTGCCGGGGAAACCCGG  50

seq1  GAAGCAGGATGAGGAATCCAGAAAGAGAAAGAAACCAGAAAAGCTGGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGGATGAGGAATCCAGAAAGAGAAAGAAACCAGAAAAGCTGGTCT  100

seq1  AGACTAGTAACGTTGACTTACAGAGAGAAGACATTTATCGCTAAGACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGTAACGTTGACTTACAGAGAGAAGACATTTATCGCTAAGACATA  150

seq1  GCAAAAATTCTTTGGATTACTGTTATAATGGAGAGGGGAGGGAAGAGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAATTCTTTGGATTACTGTTATAATGGAGAGGGGAGGGAAGAGGCC  200

seq1  GACAGCGAACACGGCACTCCTGGTGAGAGCCCAGCACTGGTGAAGACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCGAACACGGCACTCCTGGTGAGAGCCCAGCACTGGTGAAGACATT  250

seq1  TCCTCAGAACTGCACAGCTGTTAAAATGACTTCTCAGTGCACTACTTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGAACTGCACAGCTGTTAAAATGACTTCTCAGTGCACTACTTAAC  300

seq1  AAGCTCATTGCGTTTACTCAACAGTTTTTATGTAGAATTTTTGATATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCATTGCGTTTACTCAACAGTTTTTATGTAGAATTTTTGATATGTA  350

seq1  AATATGTACAATCCATGTGCAGGATGAAGAACAGGACTACACAACCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTACAATCCATGTGCAGGATGAAGAACAGGACTACACAACCTTCA  400

seq1  TCCCCCTCCTCAGTTTGGATTCGCAGTAGGGCAGAGATGGTGAGATTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTCCTCAGTTTGGATTCGCAGTAGGGCAGAGATGGTGAGATTACT  450

seq1  GCAAATGCGTGGTTTCTCATTGATTGACTCAACACCCCTATTGGAAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGCGTGGTTTCTCATTGATTGACTCAACACCCCTATTGGAAAATG  500

seq1  GATCCAGTGAGGAGACTGCCTGCAATCCCATTACGCAGGAAGCAGGGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGTGAGGAGACTGCCTGCAATCCCATTACGCAGGAAGCAGGGGCA  550

seq1  GTGTTTTCAAGACTAGCCTTGTTATATAGAGTGAACTTGAGGTTAGCGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCAAGACTAGCCTTGTTATATAGAGTGAACTTGAGGTTAGCGTG  600

seq1  AGCTATCCAAAGCACTTGTCTCAAAAGGGCAAAATAAAATAAGGGTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCCAAAGCACTTGTCTCAAAAGGGCAAAATAAAATAAGGGTTTTT  650

seq1  ATAGCTTTATTCAATGTACAGCGGGAGAAAGAACAGAACTGATTTGTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTTATTCAATGTACAGCGGGAGAAAGAACAGAACTGATTTGTGGG  700

seq1  GGCCAGAGTATAAATATAAGAGTTAGTTCTCTCTTTATGGGGATCCAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAGTATAAATATAAGAGTTAGTTCTCTCTTTATGGGGATCCAGGG  750

seq1  ACTTCACTCCGTTCTCCAGACTTACCTACCACAATGGTTGCTATTTACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACTCCGTTCTCCAGACTTACCTACCACAATGGTTGCTATTTACAC  800

seq1  TCCGAGCCTTCTCACAGGCACTAACATTTTAAGCTGTTGCTGTTTTTCCT  850
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCCGAGCCTTCTCACAGGCACTAACA-TTTAAGCTGTTGCTGTTTTTCCT  849

seq1  GAAGTCCCCTTCTGAAAACAGAACCT-AGGGCCTTGTGCTTACTAGGCAA  899
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAAGTCCCCTTCTGAAAACAGAACCTAAGGGCCTTGTGCTTACTAGGCAA  899

seq1  CTAACTACTCTGTACTGAGCTAAAGCCCAAAGCCCAAATTAAAAACAAAC  949
      ||||||||||||||||||||||||||||||||||| |||| |||||||||
seq2  CTAACTACTCTGTACTGAGCTAAAGCCCAAAGCCC-AATTTAAAACAAAC  948

seq1  AAACCTGTTTTGCATGCCGCCCCCGCCCCCGCCCCCACCCCC  991
       ||||||||||||||  || |||||||||    |||||||||
seq2  -AACCTGTTTTGCATTGCG-CCCCGCCCC--GTCCCACCCCC  986