BAC Information

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BAC

Clone NameB6Ng01-038P06
Chromosome4 (Build37)
Map Location 90,662,524 - 90,788,111
singlet/doubletdoublet
Overlap geneLOC664840
Upstream geneZfp352, LOC619842, LOC435792, Ppia-ps4_804.1
Downstream geneLOC664848, LOC100042274, Elavl2, LOC664864, LOC620016, LOC654475, 4930577H14Rik, LOC664886
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038P06.bB6Ng01-038P06.g
ACCDH866364DH866365
length1,0551,078
definitionDH866364|Mus musculus domesticus DNA, BAC clone: B6Ng01-038P06, 5' end.DH866365|Mus musculus domesticus DNA, BAC clone: B6Ng01-038P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,662,524 - 90,663,431)(90,787,014 - 90,788,111)
sequence
gaattcaaggccaacctgaagcatatagtaagactatgtctaaaaataaa
ataaaatataaacaaaatctcaatagactaaaatcaaggtgcctctgagg
ctacttatttcgaggactagagtatcggtagaacctggacaagcaattta
cttctaagctcttccaggttgtgggcagaatccattttcacataactgaa
gagctcagtcccctggatggcttgatgggtggttccctttctctatcatc
aaagccatcaacaatggcttggaacaaccctgtgcttttaggctgctgac
ttttcttgctgccacttttcttctctggtctactgaatctctctaactga
ttttctacttccatttttaaggatgctgatgtgtttgcagggcacatctg
aaagccctaacagaaatagatctcactgtggaagctgtagtgtgtcacag
tgtgtcccacagtataccctttggtctaaacttcttagctaacaaatgtt
cactgcaatgactcgttggtctcgtaggaggcatcaatggtgtgccaatt
caaagccccagttctgggcctgagatgtatctgtgctgttcagttcacca
gctttcctgctttcatgccttcagggccagctcaccagctcccccacaga
gccagctcttccaagcgttgcagccagtgaagaacatgaccaattctccc
actctcatgaccccagggttaatattccttcctgccatagatgacaaggc
aagagggaggagaggaaagtgtctctctcatctgcaccaccacccagcag
acaagaggcaggcctagctctcccacactcatacctagacctgtcatgca
gggcttgctctcatgactgctacagcagatgagaaggaaggaccaattct
gctcttatgaccttgggaccagtatcctgcctaatgttggtagaaagtta
agaaaggagtcatctctcccttgaccttgtcaccccaaggaaaacaagtg
gaagcctcaagtctcccatgctcatgccccagtactagggtcagctttac
tgtgc
gaattcctgaaggctctggtaacagggcacaaacacaccagaatttttgg
tgaagggaactcaatgtgttctctcctcagttttactgctggggagctca
gtttttctcttttagcttagcttttcatgctccacatcaggtagacttga
ccggcgaggggaaagctttgcccttcatgcttttccagctgaaggagctt
cttgctgggaaatactttggcttcatcctctttaatggttgatgaaagag
gtaagtgctttgaggcgaaggagagaaggagatcattcagaagccaggat
aatctgggtccacatgcccgcctttggcgctccctagcactgcgtttagt
agccaactgtaagactggggcctaaggtgggatgcaagtgacagagtttt
ctttcctctgtggtgaatgtagctctgatacttgtaccaggggccaagaa
aaattattctttaacatatcctaagctgataactgaaaatcttaaattag
ggattctgatctcacatctgatttaatttatgaaagttaaaaccagatgg
ttgcagggtcgggtctgcattttatagatgcgcttagcaatctctgtaag
gctctgtgagggccctgctacacaccctaggtgggaatactgtgcttttc
atatttgccattttggccacagtttccttccaggcagctcaatctgcttt
caaggtaaaattcttcccctggcctggaaccccatacaactttcatttcc
cctattttccctaagaaatcagtgcatctcctagtctttaccgttcagct
cttgtttctcaagcaagggacacagattcctgggaactatcattacacag
atggtgtcatatgacttgctcagataaaacaaatttggagagagctagaa
gtgacagatccaattctatatttaacatgaaagtcactttcctgagtcat
cccagggctttagataggacagtcctgtactaatcacgatgagcatttgc
tgaacagaacttgggggactttatcttctacgacatcttcttcttgcagc
tcaaatgaaagttttgctttcgagaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_90662524_90663431
seq2: B6Ng01-038P06.b_47_954

seq1  GAATTCAAGGCCAACCTGAAGCATATAGTAAGACTATGTCTAAAAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAACCTGAAGCATATAGTAAGACTATGTCTAAAAATAAA  50

seq1  ATAAAATATAAACAAAATCTCAATAGACTAAAATCAAGGTGCCTCTGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATATAAACAAAATCTCAATAGACTAAAATCAAGGTGCCTCTGAGG  100

seq1  CTACTTATTTCGAGGACTAGAGTATCGGTAGAACCTGGACAAGCAATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTATTTCGAGGACTAGAGTATCGGTAGAACCTGGACAAGCAATTTA  150

seq1  CTTCTAAGCTCTTCCAGGTTGTGGGCAGAATCCATTTTCACATAACTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAGCTCTTCCAGGTTGTGGGCAGAATCCATTTTCACATAACTGAA  200

seq1  GAGCTCAGTCCCCTGGATGGCTTGATGGGTGGTTCCCTTTCTCTATCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAGTCCCCTGGATGGCTTGATGGGTGGTTCCCTTTCTCTATCATC  250

seq1  AAAGCCATCAACAATGGCTTGGAACAACCCTGTGCTTTTAGGCTGCTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCATCAACAATGGCTTGGAACAACCCTGTGCTTTTAGGCTGCTGAC  300

seq1  TTTTCTTGCTGCCACTTTTCTTCTCTGGTCTACTGAATCTCTCTAACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGCTGCCACTTTTCTTCTCTGGTCTACTGAATCTCTCTAACTGA  350

seq1  TTTTCTACTTCCATTTTTAAGGATGCTGATGTGTTTGCAGGGCACATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTACTTCCATTTTTAAGGATGCTGATGTGTTTGCAGGGCACATCTG  400

seq1  AAAGCCCTAACAGAAATAGATCTCACTGTGGAAGCTGTAGTGTGTCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCTAACAGAAATAGATCTCACTGTGGAAGCTGTAGTGTGTCACAG  450

seq1  TGTGTCCCACAGTATACCCTTTGGTCTAAACTTCTTAGCTAACAAATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCCACAGTATACCCTTTGGTCTAAACTTCTTAGCTAACAAATGTT  500

seq1  CACTGCAATGACTCGTTGGTCTCGTAGGAGGCATCAATGGTGTGCCAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAATGACTCGTTGGTCTCGTAGGAGGCATCAATGGTGTGCCAATT  550

seq1  CAAAGCCCCAGTTCTGGGCCTGAGATGTATCTGTGCTGTTCAGTTCACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCCCAGTTCTGGGCCTGAGATGTATCTGTGCTGTTCAGTTCACCA  600

seq1  GCTTTCCTGCTTTCATGCCTTCAGGGCCAGCTCACCAGCTCCCCCACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCTGCTTTCATGCCTTCAGGGCCAGCTCACCAGCTCCCCCACAGA  650

seq1  GCCAGCTCTTCCAAGCGTTGCAGCCAGTGAAGAACATGACCAATTCTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTCTTCCAAGCGTTGCAGCCAGTGAAGAACATGACCAATTCTCCC  700

seq1  ACTCTCATGACCCCAGGGTTAATATTCCTTCCTGCCATAGATGACAAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCATGACCCCAGGGTTAATATTCCTTCCTGCCATAGATGACAAGGC  750

seq1  AAGAGGGAGGAGAGGAAAGTGTCTCTCTCATCTGCACCACCACCCAGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGAGGAGAGGAAAGTGTCTCTCTCATCTGCACCACCACCCAGCAG  800

seq1  ACAAGAGGCAGGCCTAGCTCTCCCACACTCATACCTAGACCTGTCATGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGGCAGGCCTAGCTCTCCCACACTCATACCTAGACCTGTCATGCA  850

seq1  GGGCTTGCTCTCATGACTGCTACAGCAGATGAGAAGGAAGGACCAATTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGCTCTCATGACTGCTACAGCAGATGAGAAGGAAGGACCAATTCT  900

seq1  GCTCTTAT  908
      ||||||||
seq2  GCTCTTAT  908

seq1: chr4_90787014_90788111
seq2: B6Ng01-038P06.g_69_1146 (reverse)

seq1  TCTTCTCTGAAAAGCAAAAACTTTCATTTGAGCTGCAAGGAAGAAGGATT  50
      |||||||   ||||| |||||||||||||||||||||| |||||||   |
seq2  TCTTCTC--GAAAGC-AAAACTTTCATTTGAGCTGCAA-GAAGAAG--AT  44

seq1  GTCGTGAGAAGATAAAGTCCCCCAAGGTTCTGTTCAGGCAAATGCTCATC  100
      ||||| ||||||||||||||||||| |||||||||| |||||||||||||
seq2  GTCGT-AGAAGATAAAGTCCCCCAA-GTTCTGTTCA-GCAAATGCTCATC  91

seq1  GTGATTAGTAACAGGACTGTCCCTTATCTAAAGCCCCTGGGGATGACTCA  150
      ||||||||| ||||||||||||  ||||||||||||   |||||||||||
seq2  GTGATTAGT-ACAGGACTGTCC--TATCTAAAGCCC--TGGGATGACTCA  136

seq1  GGAAAGTGACTTTCATGTTAAATATAGAATTGGATTCTTGTCACTTCTAG  200
      |||||||||||||||||||||||||||||||||||   ||||||||||||
seq2  GGAAAGTGACTTTCATGTTAAATATAGAATTGGAT--CTGTCACTTCTAG  184

seq1  CTCTTCTTCCAAATTTGTTTTTATCTTGAGCAAGTCATATGACACCATCT  250
      ||||   |||||||||| ||||||| ||||||||||||||||||||||||
seq2  CTCT--CTCCAAATTTG-TTTTATC-TGAGCAAGTCATATGACACCATCT  230

seq1  GTGTAATGATAGTTCCCAGGAATCTGTGTCCCTTGCTTGAGAAACAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATGATAGTTCCCAGGAATCTGTGTCCCTTGCTTGAGAAACAAGAG  280

seq1  CTGAACGGTAAAGACTAGGAGATGCACTGATTTCTTAGGGAAAATAGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACGGTAAAGACTAGGAGATGCACTGATTTCTTAGGGAAAATAGGGG  330

seq1  AAATGAAAGTTGTATGGGGTTCCAGGCCAGGGGAAGAATTTTACCTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAGTTGTATGGGGTTCCAGGCCAGGGGAAGAATTTTACCTTGAA  380

seq1  AGCAGATTGAGCTGCCTGGAAGGAAACTGTGGCCAAAATGGCAAATATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATTGAGCTGCCTGGAAGGAAACTGTGGCCAAAATGGCAAATATGA  430

seq1  AAAGCACAGTATTCCCACCTAGGGTGTGTAGCAGGGCCCTCACAGAGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACAGTATTCCCACCTAGGGTGTGTAGCAGGGCCCTCACAGAGCCT  480

seq1  TACAGAGATTGCTAAGCGCATCTATAAAATGCAGACCCGACCCTGCAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGATTGCTAAGCGCATCTATAAAATGCAGACCCGACCCTGCAACC  530

seq1  ATCTGGTTTTAACTTTCATAAATTAAATCAGATGTGAGATCAGAATCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGTTTTAACTTTCATAAATTAAATCAGATGTGAGATCAGAATCCCT  580

seq1  AATTTAAGATTTTCAGTTATCAGCTTAGGATATGTTAAAGAATAATTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAGATTTTCAGTTATCAGCTTAGGATATGTTAAAGAATAATTTTT  630

seq1  CTTGGCCCCTGGTACAAGTATCAGAGCTACATTCACCACAGAGGAAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCCCTGGTACAAGTATCAGAGCTACATTCACCACAGAGGAAAGAA  680

seq1  AACTCTGTCACTTGCATCCCACCTTAGGCCCCAGTCTTACAGTTGGCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGTCACTTGCATCCCACCTTAGGCCCCAGTCTTACAGTTGGCTAC  730

seq1  TAAACGCAGTGCTAGGGAGCGCCAAAGGCGGGCATGTGGACCCAGATTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGCAGTGCTAGGGAGCGCCAAAGGCGGGCATGTGGACCCAGATTAT  780

seq1  CCTGGCTTCTGAATGATCTCCTTCTCTCCTTCGCCTCAAAGCACTTACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTTCTGAATGATCTCCTTCTCTCCTTCGCCTCAAAGCACTTACCT  830

seq1  CTTTCATCAACCATTAAAGAGGATGAAGCCAAAGTATTTCCCAGCAAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATCAACCATTAAAGAGGATGAAGCCAAAGTATTTCCCAGCAAGAA  880

seq1  GCTCCTTCAGCTGGAAAAGCATGAAGGGCAAAGCTTTCCCCTCGCCGGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTCAGCTGGAAAAGCATGAAGGGCAAAGCTTTCCCCTCGCCGGTC  930

seq1  AAGTCTACCTGATGTGGAGCATGAAAAGCTAAGCTAAAAGAGAAAAACTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTACCTGATGTGGAGCATGAAAAGCTAAGCTAAAAGAGAAAAACTG  980

seq1  AGCTCCCCAGCAGTAAAACTGAGGAGAGAACACATTGAGTTCCCTTCACC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCCAGCAGTAAAACTGAGGAGAGAACACATTGAGTTCCCTTCACC  1030

seq1  AAAAATTCTGGTGTGTTTGTGCCCTGTTACCAGAGCCTTCAGGAATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTCTGGTGTGTTTGTGCCCTGTTACCAGAGCCTTCAGGAATTC  1078