BAC Information

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BAC

Clone NameB6Ng01-039D22
Chromosome4 (Build37)
Map Location 133,118,284 - 133,238,003
singlet/doubletdoublet
Overlap geneGpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a
Upstream genePtafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2
Downstream geneRps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039D22.bB6Ng01-039D22.g
ACCDH866567DH866568
length3951,087
definitionDH866567|Mus musculus domesticus DNA, BAC clone: B6Ng01-039D22, 5' end.DH866568|Mus musculus domesticus DNA, BAC clone: B6Ng01-039D22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,118,284 - 133,118,684)(133,236,912 - 133,238,003)
sequence
caaacaatcacacaatcgcagaaactacccaaagctggcaaaaccatgcc
tctgctagagcatgaggcaaatcacagtcagctgttgtccccagcagccc
cttcgatgaaaagaaaagcactttcttctaatatttcagtgttttgtttt
gtttttttaaagaaactaaaactccaaaattgtcactacaataattaatt
gtgcccagaggtgggaaggtgcttccctggtgcgttgactgttcagaaac
atctgggggggtttgcaagggtgaggcctaacagagggaggagaatatgc
aaaggcacagaggtgccagggaacaagcactgcttcttgaatgcatccta
gaacctatggatctaagggtggtgagagatggaggtgtgtgaata
gaattcttcccttcctttttttctctctttcagctcccaggcttgctaga
gctccttgtggaatatttccgtagatgcctaattgaaatctttggcattt
taaaggagtatgaggtaggggacccaggacagagaacattactagaccct
gggagattcaccaaggtgtatagtccagcccatacagaggaagaagagga
agaacaccttgatcctaaactggaggaggaagaggaagaaggggttggaa
atgatgaggagatggcctttttgggcaaggacaagccatcttcagagaat
aatgaggagaagctagtcagtaagtttgacaagcttccggtaaagatcgt
gcagaggaatgacccatttgtggtggactgctcagataagcttgggcgcg
tgcaggagtttgacagtggcctgctacactggcggattggtggtggggat
accactgagcatatccagacccactttgagagcaagatagagctgctgcc
ttcccggccttatgtgccctgcccaacgccccctcggaaacacctcacaa
cagtagagggcacaccagggacaacggagcaggagggccccccgcccgat
ggccttccagagaaaaggatcacagccaccatggatgacatgttgtctac
ccggtctagcacattgactgatgagggggcaaagagtgcagaggccacca
aggaaagcagcaagtttccatttggcattagcccagcacagagccaccgg
aacatcaaaattttagaggatgaaccccatagtaaggatgagaccccact
gtgtacccttctggactggcaggattctcttgctaagcgctgtgtctgtg
tctccaataccatccggagcctgtcgtttgtgccaggcaacgactttgag
atgtcaaacacccaggctgctgcttatcctgggcaagctgatctgctgca
ccacaagcacccagagcggaagcatgcaccacttacttatgagaaggagg
agaacaggactaagggttgagctgtgacaaagtggagtggtggtgggact
gcttgagaatgctccgagaaaacacgctgtcaccctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_133118284_133118684
seq2: B6Ng01-039D22.b_45_445

seq1  GAATTCCAAACAATCACACAATCGCAGAAACTACCCAAAGCTGGCAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACAATCACACAATCGCAGAAACTACCCAAAGCTGGCAAAAC  50

seq1  CATGCCTCTGCTAGAGCATGAGGCAAATCACAGTCAGCTGTTGTCCCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTCTGCTAGAGCATGAGGCAAATCACAGTCAGCTGTTGTCCCCAG  100

seq1  CAGCCCCTTCGATGAAAAGAAAAGCACTTTCTTCTAATATTTCAGTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCTTCGATGAAAAGAAAAGCACTTTCTTCTAATATTTCAGTGTTT  150

seq1  TGTTTTGTTTTTTTAAAGAAACTAAAACTCCAAAATTGTCACTACAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTTTTAAAGAAACTAAAACTCCAAAATTGTCACTACAATAA  200

seq1  TTAATTGTGCCCAGAGGTGGGAAGGTGCTTCCCTGGTGCGTTGACTGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGTGCCCAGAGGTGGGAAGGTGCTTCCCTGGTGCGTTGACTGTTC  250

seq1  AGAAACATCTGGGGGGGTTTGCAAGGGTGAGGCCTAACAGAGGGAGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATCTGGGGGGGTTTGCAAGGGTGAGGCCTAACAGAGGGAGGAGA  300

seq1  ATATGCAAAGGCACAGAGGTGCCAGGGAACAAGCACTGCTTCTTGAATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCAAAGGCACAGAGGTGCCAGGGAACAAGCACTGCTTCTTGAATGC  350

seq1  ATCCTAGAACCTATGGATCTAAGGGTGGTGAGAGATGGAGGTGTGTGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGAACCTATGGATCTAAGGGTGGTGAGAGATGGAGGTGTGTGAAT  400

seq1  A  401
      |
seq2  A  401

seq1: chr4_133236912_133238003
seq2: B6Ng01-039D22.g_67_1153 (reverse)

seq1  GAGGGTGACCAGCGTGTTTTCTCGGAGCATCTCCAAGCAGTCCCACCACC  50
      |||||||| |||||||||||||||||||||   |||||||||||||||||
seq2  GAGGGTGA-CAGCGTGTTTTCTCGGAGCATTCTCAAGCAGTCCCACCACC  49

seq1  ACTCCACTTTGTCACAGCTCACCCCTTGGTCCTGTTCCTCCTCCTTCTCA  100
      ||||||||||||||||||||| ||||| |||||||| |||||||||||||
seq2  ACTCCACTTTGTCACAGCTCAACCCTTAGTCCTGTT-CTCCTCCTTCTCA  98

seq1  TAAGTTAGTGGTGCCTGCTTCCGCTCTGGGTGCTTGTGGTGCAGCAGGAT  150
      ||||| |||||||| ||||||||||||||||||||||||||||||| |||
seq2  TAAGTAAGTGGTGCATGCTTCCGCTCTGGGTGCTTGTGGTGCAGCA-GAT  147

seq1  CAGCTTGCCCAGGATAAGCAGCAGCCCTGGGTGTTTGGACATCTCAAAGT  200
      |||||||||||||||||||||||| ||||||||||| |||||||||||||
seq2  CAGCTTGCCCAGGATAAGCAGCAG-CCTGGGTGTTT-GACATCTCAAAGT  195

seq1  CGTTGCCTGGCACAAACGACAGGCTCCGGATGGTATTGGAGACACAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGCCTGGCACAAACGACAGGCTCCGGATGGTATTGGAGACACAGACA  245

seq1  CAGCGCTTAGCAAGGGAATCCTGCCAGTCCAGAAGGGTACACAGTGGGGT  300
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAGCGCTTAGCAAGAGAATCCTGCCAGTCCAGAAGGGTACACAGTGGGGT  295

seq1  CTCATCCTTACTATGGGGTTCATCCTCTAAAATTTTGATGTTCCGGTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCTTACTATGGGGTTCATCCTCTAAAATTTTGATGTTCCGGTGGC  345

seq1  TCTGTGCTGGGCTAATGCCAAATGGAAACTTGCTGCTTTCCTTGGTGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCTGGGCTAATGCCAAATGGAAACTTGCTGCTTTCCTTGGTGGCC  395

seq1  TCTGCACTCTTTGCCCCCTCATCAGTCAATGTGCTAGACCGGGTAGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACTCTTTGCCCCCTCATCAGTCAATGTGCTAGACCGGGTAGACAA  445

seq1  CATGTCATCCATGGTGGCTGTGATCCTTTTCTCTGGAAGGCCATCGGGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCATCCATGGTGGCTGTGATCCTTTTCTCTGGAAGGCCATCGGGCG  495

seq1  GGGGGCCCTCCTGCTCCGTTGTCCCTGGTGTGCCCTCTACTGTTGTGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCCCTCCTGCTCCGTTGTCCCTGGTGTGCCCTCTACTGTTGTGAGG  545

seq1  TGTTTCCGAGGGGGCGTTGGGCAGGGCACATAAGGCCGGGAAGGCAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCGAGGGGGCGTTGGGCAGGGCACATAAGGCCGGGAAGGCAGCAG  595

seq1  CTCTATCTTGCTCTCAAAGTGGGTCTGGATATGCTCAGTGGTATCCCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCTTGCTCTCAAAGTGGGTCTGGATATGCTCAGTGGTATCCCCAC  645

seq1  CACCAATCCGCCAGTGTAGCAGGCCACTGTCAAACTCCTGCACGCGCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATCCGCCAGTGTAGCAGGCCACTGTCAAACTCCTGCACGCGCCCA  695

seq1  AGCTTATCTGAGCAGTCCACCACAAATGGGTCATTCCTCTGCACGATCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTATCTGAGCAGTCCACCACAAATGGGTCATTCCTCTGCACGATCTT  745

seq1  TACCGGAAGCTTGTCAAACTTACTGACTAGCTTCTCCTCATTATTCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGGAAGCTTGTCAAACTTACTGACTAGCTTCTCCTCATTATTCTCTG  795

seq1  AAGATGGCTTGTCCTTGCCCAAAAAGGCCATCTCCTCATCATTTCCAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGCTTGTCCTTGCCCAAAAAGGCCATCTCCTCATCATTTCCAACC  845

seq1  CCTTCTTCCTCTTCCTCCTCCAGTTTAGGATCAAGGTGTTCTTCCTCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTCCTCTTCCTCCTCCAGTTTAGGATCAAGGTGTTCTTCCTCTTC  895

seq1  TTCCTCTGTATGGGCTGGACTATACACCTTGGTGAATCTCCCAGGGTCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGTATGGGCTGGACTATACACCTTGGTGAATCTCCCAGGGTCTA  945

seq1  GTAATGTTCTCTGTCCTGGGTCCCCTACCTCATACTCCTTTAAAATGCCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGTTCTCTGTCCTGGGTCCCCTACCTCATACTCCTTTAAAATGCCA  995

seq1  AAGATTTCAATTAGGCATCTACGGAAATATTCCACAAGGAGCTCTAGCAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTCAATTAGGCATCTACGGAAATATTCCACAAGGAGCTCTAGCAA  1045

seq1  GCCTGGGAGCTGAAAGAGAGAAAAAAAGGAAGGGAAGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGAGCTGAAAGAGAGAAAAAAAGGAAGGGAAGAATTC  1087