BAC Information

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BAC

Clone NameB6Ng01-039E18
Chromosome4 (Build37)
Map Location 146,889,309 - 146,889,853
singlet/doubletsinglet
Overlap genenone
Upstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671
Downstream geneLOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039E18.bB6Ng01-039E18.g
ACCDH866603DH866604
length1,2141,027
definitionDH866603|Mus musculus domesticus DNA, BAC clone: B6Ng01-039E18, 5' end.DH866604|Mus musculus domesticus DNA, BAC clone: B6Ng01-039E18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcccattactaattaggttttttttccaaagtctgatagaattc
tgcactaaacccatcaggtcctgggcttttttggttggaaagcttttaaa
atggctgcttctctttctttagaggttacaggactgtttagatggtttat
ctgatcctgatttaattttggtatttggtatctctctaaaatattgtcca
ttttatccagattttccagttttgttaagtatgggcttttgtagtaggat
ctggtgattatttgaatttccttggtttctgttgttatgtctcccttttc
aattctgattttgttaatttggatactgtttctgtgttctctggttagtc
tggctaaaggtttatcttgtttattttctcaaaggactagctcctggttt
tgttgattctctgtataggtcattttgtttctacttggttgattttagct
ctgagtttgattatttcttactgtctactcctcttgggtgagattgcttc
tttttgttctagagctttcagatgtgctgtcaagctgctagtgtatgctc
tctccagtttctttttggaggcactcagagctgtgagttttccttttagc
attgctttcattgtgttccataagtttggatatgttgtgccttcattttc
attaaattctaaaaagtctttaatttctgttacctccttccagcctagca
aggctgactgtgaccatctgccacttaggcagagccacctgctgtgctgc
ttctcatcactctcctttgatgtgccactacctgctacctgcctgaggcc
aaaccagttctccaagatctactggagttagcttggaactgtgattttcc
tggttcctactaaaaggctgatctgacaacttcaaggaactttgtgtgac
tgggaatgggcctcccctctctttataaagcgtgtttgcctacattaaag
ttgagtcttgatcagaatacagtctgactcatttctctgtttacccgcct
agatccctcttttctttcagttccagatgcattccaggcttgactcagaa
atgagagctgcagcagccccacaaattctttcttcaaatttcttcttgac
agtatcatgagtagagcatgtagctcagggtattggccttggtgtatatg
tatgaacgtcaagtctgggaactgaagagacatggatatcaacctctgtt
ctgttgagacggtt
gaattcatttttggtcagagaaatcatctaagaactttttaagggaaact
atttctgttgagaaaaaggtggcatatgttttattcatggcatattcttg
gcaatactcaaggctccacactagagaattagtatgattatgaaaatctt
gtgaaaattttcatgcaatgttcaaatcttaaataatgtcaattctgaca
atatgaaaatgtagcaagcatttctttctttctttctttctttctttctt
tctttctttctttctttctttcttttttcttggttggtttttagagacag
gtattctctgtatatccatggccatcctgtagaccaggctggccttgaac
tcagaaatctgcctgcctctctctcctgagtgctaggattaaagacatgt
gccaccacgccctgctgtagaaagctttcatttttttttaagatttattt
atttatttattatataaataatgtacactgtagctgtcttcagacactcc
agaagagggtgtcagatctctttttttgagccaccatgtggttgctggga
tttgaactcaggacctttggaagagcagtcagtgttcttacccactgagc
catctcaccagccctgtagaaagcttttcatgacacctttttatttgttc
accctcaaatgttacaagatgaagacaagttgggaagtcagaagatatta
ttgtgtaacactttcatcgagaaagaaataatccatttcaaaaggaaacc
catagaaggagttacagagacaaaatttggagctgtgacgaaaggatgga
ccatctagtgattgccaaatcagggatccatcccataatcagcttccaaa
tgctgacaccattgcatacactagcaagattttgctgaaaggacccagat
atagctctctctgtgagactatgccggggcctagcaaacacagaagtgga
tgatcacagtcagctattggatgggtcacacggccccttatggaggagct
agagaaataccaaggagctaagggact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146889309_146889853
seq2: B6Ng01-039E18.g_64_812

seq1  GAATTCA-TTTTAGTCAGAGAAAACATCTAAGAACTTTTTAAGGGAAAGT  49
      ||||||| |||| |||||||||| |||||||||||||||||||||||| |
seq2  GAATTCATTTTTGGTCAGAGAAATCATCTAAGAACTTTTTAAGGGAAACT  50

seq1  ATTTCTGTTGAGAAAAAGGTGGCATATGTTTTATTCATGGCATATTCTTG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTTGAGAAAAAGGTGGCATATGTTTTATTCATGGCATATTCTTG  100

seq1  GCAATACTCAAGGCTCCACACTAGAGAATTAGTATAATTATGAGAATCTT  149
      ||||||||||||||||||||||||||||||||||| ||||||| ||||||
seq2  GCAATACTCAAGGCTCCACACTAGAGAATTAGTATGATTATGAAAATCTT  150

seq1  TTGAAAATTTTCATGCAATGTTCAAATCTTAAATAATGTCGACTCTGACA  199
       ||||||||||||||||||||||||||||||||||||||| | |||||||
seq2  GTGAAAATTTTCATGCAATGTTCAAATCTTAAATAATGTCAATTCTGACA  200

seq1  ATTTGAAAAAATGTAGCAAGCCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  249
      || ||  |||||||||||||| ||||||||||||||||||||||||||||
seq2  ATATG--AAAATGTAGCAAGCATTTCTTTCTTTCTTTCTTTCTTTCTTTC  248

seq1  TTTCTTTCTTTCTT------TTTTTTGGGGGGGGGTTGGTTTTTAGAGAC  293
      ||||||||||||||      ||| ||       |||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTTTTCTTGGTTGGTTTTTAGAGAC  298

seq1  AGGGTTTCTCTGTATATCCATGGCCATCCTGTAGACCAGGCTGGCCTCGA  343
      |||  |||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGGTATTCTCTGTATATCCATGGCCATCCTGTAGACCAGGCTGGCCTTGA  348

seq1  ACTCAGTAATCCGCCTGCCTCTCTCTCCCGAGTGCTTGGATTAAAGACAT  393
      |||||| |||| |||||||||||||||| ||||||| |||||||||||||
seq2  ACTCAGAAATCTGCCTGCCTCTCTCTCCTGAGTGCTAGGATTAAAGACAT  398

seq1  GTGCCACCACGCC-------------------------------------  406
      |||||||||||||                                     
seq2  GTGCCACCACGCCCTGCTGTAGAAAGCTTTCATTTTTTTTTAAGATTTAT  448

seq1  --------------------------------------------------  406
                                                        
seq2  TTATTTATTTATTATATAAATAATGTACACTGTAGCTGTCTTCAGACACT  498

seq1  --------------------------------------------------  406
                                                        
seq2  CCAGAAGAGGGTGTCAGATCTCTTTTTTTGAGCCACCATGTGGTTGCTGG  548

seq1  -------------------------------CAGT---------------  410
                                     ||||               
seq2  GATTTGAACTCAGGACCTTTGGAAGAGCAGTCAGTGTTCTTACCCACTGA  598

seq1  ----------------TGTAGAAAGCTTTTCATGACACCTTTTTATTTGT  444
                      ||||||||||||||||||||||||||||||||||
seq2  GCCATCTCACCAGCCCTGTAGAAAGCTTTTCATGACACCTTTTTATTTGT  648

seq1  TCACCCTCAAATGTGGCAAGATGAAGACAAGCTGGGAAGTCAGAAGATAG  494
      ||||||||||||||  ||||||||||||||| ||||||||||||||||| 
seq2  TCACCCTCAAATGTTACAAGATGAAGACAAGTTGGGAAGTCAGAAGATAT  698

seq1  TATTGTGTAACACTTTCTTTAAGACAGAAATAATCCATTTCAAAAGGAAA  544
      ||||||||||||||||| |  ||| |||||||||||||||||||||||||
seq2  TATTGTGTAACACTTTCATCGAGAAAGAAATAATCCATTTCAAAAGGAAA  748

seq1  C  545
      |
seq2  C  749