BAC Information

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BAC

Clone NameB6Ng01-039K07
Chromosome4 (Build37)
Map Location 54,316,161 - 54,317,109
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041197, Slc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280
Downstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462, LOC670211
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039K07.g
ACCDH866856
length947
definitionDH866856|Mus musculus domesticus DNA, BAC clone: B6Ng01-039K07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattagagttggaagaaggctcagctctgggcaagttttcttcaa
ccctacaggtgtgctgaggaatggtgtgtgattcaagaacaatatccaat
cgtagtacatgttaagggccagtctaaagatgctgaagattttggaattt
gtattaagtttgcatagtaggagatcttacatgtattgtcttggtatgac
tttatagtatattgtttgtaatcagatgaatattaggaacaataataata
aggtcagaatgttttgagtgactcacagattcaatctgataagttgagac
ttttcttaagtcagattctctgaaaggcagaacctaagacatgaatttgg
attctctttcccactgttattagtatttttaagacattctttctacgtta
ctttaatcaccctgtgtagtagcttgttacttatatcttgctttgtaata
cagacaacctttgtaatgcagacaatagtagcctgtactattgtccatct
tgctttgttatacaggcaacctttgtcttttaatggaaatgttttgtcca
tttacaatgaatgaaattattgaattatttatgtgtagctgtataatttt
tgagattatttttgctcaccatcatctattagacacgtttcatgccttat
ttgggttactttgagttactcaattaatattattttcccaaaagtcaatt
taattcttcaaataaattttattcatactaatttgtattgctcttatttc
cttactgtgaatttttaaaattacgtttcatgactctcatcccagtattc
ttaaagatcatattctaccagtgagataagtatttaggaccattaaggac
caagtattagaaataattcatttatgtgtaaattttgtgataatttttgg
ttgttagtttcaaccagcacagtatatcttacaactgttttaagtaa
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_54316161_54317109
seq2: B6Ng01-039K07.g_68_1014

seq1  GAATTCATTAGAGTTGGAAGAAGGCTCAGCTCTGGGCAAGTTTTCTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGAGTTGGAAGAAGGCTCAGCTCTGGGCAAGTTTTCTTCAA  50

seq1  CCCTACAGGTGTGCTGAGGAATGGTGTGTGATTCAAGAACAATATCCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACAGGTGTGCTGAGGAATGGTGTGTGATTCAAGAACAATATCCAAT  100

seq1  CGTAGTACATGTTAAGGGCCAGTCTAAAGATGCTGAAGATTTTGGAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGTACATGTTAAGGGCCAGTCTAAAGATGCTGAAGATTTTGGAATTT  150

seq1  GTATTAAGTTTGCATAGTAGGAGATCTTACATGTATTGTCTTGGTATGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAAGTTTGCATAGTAGGAGATCTTACATGTATTGTCTTGGTATGAC  200

seq1  TTTATAGTATATTGTTTGTAATCAGATGAATATTAGGAACAATAATAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGTATATTGTTTGTAATCAGATGAATATTAGGAACAATAATAATA  250

seq1  AGGTCAGAATGTTTTGAGTGACTCACAGATTCAATCTGATAAGTTGAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGAATGTTTTGAGTGACTCACAGATTCAATCTGATAAGTTGAGAC  300

seq1  TTTTCTTAAGTCAGATTCTCTGAAAGGCAGAACCTAAGACATGAATTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTAAGTCAGATTCTCTGAAAGGCAGAACCTAAGACATGAATTTGG  350

seq1  ATTCTCTTTCCCACTGTTATTAGTATTTTTAAGACATTCTTTCTACGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTTTCCCACTGTTATTAGTATTTTTAAGACATTCTTTCTACGTTA  400

seq1  CTTTAATCACCCTGTGTAGTAGCTTGTTACTTATATCTTGCTTTGTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCACCCTGTGTAGTAGCTTGTTACTTATATCTTGCTTTGTAATA  450

seq1  CAGACAACCTTTGTAATGCAGACAATAGTAGCCTGTACTATTGTCCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAACCTTTGTAATGCAGACAATAGTAGCCTGTACTATTGTCCATCT  500

seq1  TGCTTTGTTATACAGGCAACCTTTGTCTTTTAATGGAAATGTTTTGTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGTTATACAGGCAACCTTTGTCTTTTAATGGAAATGTTTTGTCCA  550

seq1  TTTACAATGAATGAAATTATTGAATTATTTATGTGTAGCTGTATAA-TTT  599
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTACAATGAATGAAATTATTGAATTATTTATGTGTAGCTGTATAATTTT  600

seq1  TGAGATTATTTTTGCTCACCATCATCTATTAGACACGTTTCATGCCTTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTATTTTTGCTCACCATCATCTATTAGACACGTTTCATGCCTTAT  650

seq1  TTGGGTTACTTTGAGTTACTCAATTAATATTA-TTTCCCAAAAGTCAATT  698
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTGGGTTACTTTGAGTTACTCAATTAATATTATTTTCCCAAAAGTCAATT  700

seq1  TAATTCTTCAAATAAATTTTATTCATACTAATTTGTATTGCTCTTA-TTC  747
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TAATTCTTCAAATAAATTTTATTCATACTAATTTGTATTGCTCTTATTTC  750

seq1  CTTACTGTGAATTTTTAAAATTACGTTTCATGACTCTCATCCCAGTATTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGTGAATTTTTAAAATTACGTTTCATGACTCTCATCCCAGTATTC  800

seq1  TTAAAGATCATATTCTACCAGTGAGATAAAGTA-TTAGGACCATTAAGGA  846
      ||||||||||||||||||||||||||| ||||| ||||||||||||||||
seq2  TTAAAGATCATATTCTACCAGTGAGAT-AAGTATTTAGGACCATTAAGGA  849

seq1  CCAAAGTATTAGAAATAATTCCATTTATGTGTAAATTTTTGTGAT-ATTT  895
      || ||||||||||||||||| |||||||||||||| ||||||||| ||||
seq2  CC-AAGTATTAGAAATAATT-CATTTATGTGTAAA-TTTTGTGATAATTT  896

seq1  TTGGTTGTATAGTTTCAACCAGCACAGTATAATCTTACAACTTGTTTTAA  945
      |||||||| ||||||||||||||||||||| |||||||||| ||||||||
seq2  TTGGTTGT-TAGTTTCAACCAGCACAGTAT-ATCTTACAAC-TGTTTTAA  943

seq1  GTAA  949
      ||||
seq2  GTAA  947