BAC Information

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BAC

Clone NameB6Ng01-039L03
Chromosome4 (Build37)
Map Location 53,406,827 - 53,514,872
singlet/doubletdoublet
Overlap geneSlc44a1
Upstream geneSmc2, LOC100040883, 4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197
Downstream geneFsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039L03.bB6Ng01-039L03.g
ACCDH866891DH866892
length1,09664
definitionDH866891|Mus musculus domesticus DNA, BAC clone: B6Ng01-039L03, 5' end.DH866892|Mus musculus domesticus DNA, BAC clone: B6Ng01-039L03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,513,765 - 53,514,872)(53,406,827 - 53,406,890)
sequence
gaattcagagatttatttattgatttattaatttatttttggtttttcga
gatagggtttctctgtacagccctggatgtcctggaactcactttgtata
ctaggctggcctcgaactcagaaatctgcctgcctctgcctcccgagtgc
tgggattaaaggcgtgtgccaccacgcccggccactttttttttttaatt
aaagctaaaaaaataatggcatcacaaaatatagcaaaaattattttcca
aatatgcctccgaaaacttgtcttttgaaaatttagattttccaactttt
aatgttttgttatgagagaaactgagtggggaccttgcataaatgataga
gcaaatttcaatttgatcataagtgttaccatttctgaatggtgatgatg
tctgtggtataggaaatctacaaatgcaggttcatttgaggtctccacct
agggtgtttcttctcattttatgctaagctaggaggagagagaggcagca
agctaaggttggcagctacaagcaacctgatgggagaatggggttggtga
tttccttcaaagcgaaggaaaatgctcaaaactgagcccgtctcacaaac
taagactatatctacctatttccaggcactgtgtaagcaagcaggtgagc
tgccgggtgctctgaagaacactgccaagctccagcttctgtacaaagca
taacgtgctacatcccaccttcacgcttcaatgccaagggacagttacaa
gttccctcccatatagaccagtcctcaccttgcattagcctggcctgcaa
gaacaccaacctgacagactggaagcctcgaactgaacctctccctgtga
aactggggctctatatctgactaaaatgaccctgacctaagactccctcc
atctctgcctgaggctctttaaccaagaagctgccctgagggaaggctca
tgatggaaaggctttcactggaacaggaagggatcgtgagccacagatac
agttcatgttaagcactgaaaatgactccttgcgtatatagcaggacacc
aagactggtctcaagccacatggaactgacttcgggcagaggtacg
tctgtcttcattctttttaaggagggtgtgtgtgtgtgtgtgtgtgtgtg
tgttcatgtgtatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_53513765_53514872
seq2: B6Ng01-039L03.b_47_1142 (reverse)

seq1  CGTACCCTCCTGCCCGGAGTTCAGTTCCATGTGGCTTGAGGACTCAGGTC  50
      ||||||   ||||||| || ||||||||||||||||||| ||| || |||
seq2  CGTACC--TCTGCCCGAAG-TCAGTTCCATGTGGCTTGA-GAC-CA-GTC  44

seq1  TT-GTGTCCTTGCTTATTATTACGCAAGGAGTCATTTTTCAGTGCCTAAC  99
      || |||||| ||| |||   |||||||||||||| |||||||||| ||||
seq2  TTGGTGTCC-TGC-TAT--ATACGCAAGGAGTCA-TTTTCAGTGCTTAAC  89

seq1  ATGAACCTGTATCTGTGGCTCACGATCCCTTCCTTGTTCCAGTGAAAGCC  149
      ||||| ||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATGAA-CTGTATCTGTGGCTCACGATCCCTTCC-TGTTCCAGTGAAAGCC  137

seq1  TTTCCATCATGAGCCTTCCCTCAGGGCAGCTTCTTGGTTAAAGAGCCTCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATCATGAGCCTTCCCTCAGGGCAGCTTCTTGGTTAAAGAGCCTCA  187

seq1  GGCAGAGATGGAGGAAGTCTTAGGTCAGGGTCATTTTAGTCAGATATAGA  249
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGCAGAGATGGAGGGAGTCTTAGGTCAGGGTCATTTTAGTCAGATATAGA  237

seq1  GCCCCAGTTTCACAGGGAGAGGTTCAGTTCGAGGCTTCCAGTCTGTCAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGTTTCACAGGGAGAGGTTCAGTTCGAGGCTTCCAGTCTGTCAGG  287

seq1  TTGGTGTTCTTGCAGGCCAGGCTAATGCAAGGTGAGGACTGGTCTATATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTTCTTGCAGGCCAGGCTAATGCAAGGTGAGGACTGGTCTATATG  337

seq1  GGAGGGAACTTGTAACTGTCCCTTGGCATTGAAGCGTGAAGGTGGGATGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAACTTGTAACTGTCCCTTGGCATTGAAGCGTGAAGGTGGGATGT  387

seq1  AGCACGTTATGCTTTGTACAGAAGCTGGAGCTTGGCAGTGTTCTTCAGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGTTATGCTTTGTACAGAAGCTGGAGCTTGGCAGTGTTCTTCAGAG  437

seq1  CACCCGGCAGCTCACCTGCTTGCTTACACAGTGCCTGGAAATAGGTAGAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCGGCAGCTCACCTGCTTGCTTACACAGTGCCTGGAAATAGGTAGAT  487

seq1  ATAGTCTTAGTTTGTGAGACGGGCTCAGTTTTGAGCATTTTCCTTCGCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTTAGTTTGTGAGACGGGCTCAGTTTTGAGCATTTTCCTTCGCTT  537

seq1  TGAAGGAAATCACCAACCCCATTCTCCCATCAGGTTGCTTGTAGCTGCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAAATCACCAACCCCATTCTCCCATCAGGTTGCTTGTAGCTGCCA  587

seq1  ACCTTAGCTTGCTGCCTCTCTCTCCTCCTAGCTTAGCATAAAATGAGAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAGCTTGCTGCCTCTCTCTCCTCCTAGCTTAGCATAAAATGAGAAG  637

seq1  AAACACCCTAGGTGGAGACCTCAAATGAACCTGCATTTGTAGATTTCCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCCTAGGTGGAGACCTCAAATGAACCTGCATTTGTAGATTTCCTA  687

seq1  TACCACAGACATCATCACCATTCAGAAATGGTAACACTTATGATCAAATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAGACATCATCACCATTCAGAAATGGTAACACTTATGATCAAATT  737

seq1  GAAATTTGCTCTATCATTTATGCAAGGTCCCCACTCAGTTTCTCTCATAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTGCTCTATCATTTATGCAAGGTCCCCACTCAGTTTCTCTCATAA  787

seq1  CAAAACATTAAAAGTTGGAAAATCTAAATTTTCAAAAGACAAGTTTTCGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACATTAAAAGTTGGAAAATCTAAATTTTCAAAAGACAAGTTTTCGG  837

seq1  AGGCATATTTGGAAAATAATTTTTGCTATATTTTGTGATGCCATTATTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATATTTGGAAAATAATTTTTGCTATATTTTGTGATGCCATTATTTT  887

seq1  TTTAGCTTTAATTAAAAAAAAAAAGTGGCCGGGCGTGGTGGCACACGCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTTTAATTAAAAAAAAAAAGTGGCCGGGCGTGGTGGCACACGCCT  937

seq1  TTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGG  987

seq1  CCAGCCTAGTATACAAAGTGAGTTCCAGGACATCCAGGGCTGTACAGAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTAGTATACAAAGTGAGTTCCAGGACATCCAGGGCTGTACAGAGA  1037

seq1  AACCCTATCTCGAAAAACCAAAAATAAATTAATAAATCAATAAATAAATC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTATCTCGAAAAACCAAAAATAAATTAATAAATCAATAAATAAATC  1087

seq1  TCTGAATTC  1108
      |||||||||
seq2  TCTGAATTC  1096

seq1: chr4_53406827_53406890
seq2: B6Ng01-039L03.g_71_134

seq1  TCTGTCTTCATTCTTTTTAAGGAGGGTGTGTGTGTGTGTGTGTGTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTCATTCTTTTTAAGGAGGGTGTGTGTGTGTGTGTGTGTGTGTG  50

seq1  TGTTCATGTGTATG  64
      ||||||||||||||
seq2  TGTTCATGTGTATG  64