BAC Information

Click to search

BAC

Clone NameB6Ng01-039M12
Chromosome4 (Build37)
Map Location 115,753,653 - 115,931,216
singlet/doubletdoublet
Overlap geneLrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3
Upstream genePdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh
Downstream geneMast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039M12.bB6Ng01-039M12.g
ACCDH866948DH866949
length983923
definitionDH866948|Mus musculus domesticus DNA, BAC clone: B6Ng01-039M12, 5' end.DH866949|Mus musculus domesticus DNA, BAC clone: B6Ng01-039M12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,930,407 - 115,931,216)(115,753,653 - 115,754,576)
sequence
gaattcataaagacagaatatagaagcctggtcaggaagggctcaaggag
aggaagaagacccgttttaacccatagagtttcagttcgaaagatgcaca
agttctgaagacagacggacggttattatgtgtataacagtatgactgta
cctaataacaatgaaaaggtaaaacgatatgggtaaaagagaactgggat
gggtaccacttggtagcaggacaaaggttgagagaagcccagaaggtgat
atacagaggcactacagcatcctctggagccagcctccacagaaacagct
gggggttaaaaaagaaaagaaagcacaatagatgggcatgggggtacaag
cctgcaaactgtccagttatgaggctgaggcagggggacaaagtcaaggt
caatagggtcttcagaacatgcttgtagccagactgagctacatagtgaa
actcggtctcaaaaaaacaaagccgggcgtggtggtgtacacctttaatc
ccagcactcgggaggcagaggcaggcggatttctgagttcgagtccagcc
tggtctacaatgtgagttacaggacaaccagggctacacagagaaaccct
gtctccaaaaaaaaaaaaaaaaattggagacccattactttaatgagaaa
aatataaataaaagatagaatattcaattaatagtgtatgagtaaacaaa
tattccctctttgtgttcaaaattatctaaatctactgttaatccaaaaa
gcagatctctccttgatgtctattttctgagaataagctatataaagaaa
ttacaaaaagaagtcatgaatttaaaagagcatggaaggaaaaagaaagt
ttggaggaggaaagggaagggaaaatgatgcagtctcaaaactaaagaaa
tgatttttaaaacagcatcaaaccaggttctacacacctctaatccagca
cctggaggcagagtcgagcaatctctttgagct
gaattccaggacaggcagggctacacagagaaaccctgtctcgaaaaacc
agaaaaaaaaattcagtttgcaaggccttggtacattcatctagcttaag
agaagccaaataaaaaggattaagtggggaaggtctggagagacatatgg
ttcagcggtcaacagcgctggctgcttttactgataacctaggtgcagtt
cccagcaccttcatggcacctcacaactgtctgagacaaactccacttcc
aagaaatccaatgcccctttctggcctcactgagcaccatgcctacatgg
tacataggtatacatgtaggcaaaacaaccatacacataaaattaaaata
aaaaggactaaggactagtcatcgtggttgaagctgctcactgtatactg
atctgtgtgaacataggtgagagtatatataggacaagggagaggggtag
tcctgcctggttttgcagtagtcagcctatgtgtccctataataaggaga
agaaacattgatcagaacttcaagattatccttagctacatactgtttca
cggccagccttcactgcataaaactgagaccctgacttcaaaaagactcc
tgtgaagtaaaaaacattcaatgtcataataatatgtggaaaagtagaat
tttacctcgttagtaaacctttttttggttacagaatgtcattcagatat
caaacagacgcctgaaatatcaaacaccttaatgctttattggttggaac
aaactgtcacaatatttattattcactcattcatttatttgttgaggcag
gatcttaactatatagtactggaccaggctggctggctctcccaggctca
cagagatcctcctgtttctgcttcccaggttatgggattaaaggggtttt
tttggtgttgtttttgttttggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_115930407_115931216
seq2: B6Ng01-039M12.b_44_854 (reverse)

seq1  TCTTTTTGTAATTTCTTTATATAGCTTATTCTCAG-AAATAGACATCAAG  49
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCTTTTTGTAATTTCTTTATATAGCTTATTCTCAGAAAATAGACATCAAG  50

seq1  GAGAGATCTGCTTTTTGGATTAACAGTAGATTTAGATAATTTTGAACACA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATCTGCTTTTTGGATTAACAGTAGATTTAGATAATTTTGAACACA  100

seq1  AAGAGGGAATATTTGTTTACTCATACACTATTAATTGAATATTCTATCTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGAATATTTGTTTACTCATACACTATTAATTGAATATTCTATCTT  150

seq1  TTATTTATATTTTTCTCATTAAAGTAATGGGTCTCCAATTTTTTTTTTTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATATTTTTCTCATTAAAGTAATGGGTCTCCAATTTTTTTTTTTT  200

seq1  TTTTTGGAGACAGGGTTTCTCTGTGTAGCCCTGGTTGTCCTGTAACTCAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGAGACAGGGTTTCTCTGTGTAGCCCTGGTTGTCCTGTAACTCAC  250

seq1  ATTGTAGACCAGGCTGGACTCGAACTCAGAAATCCGCCTGCCTCTGCCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAGACCAGGCTGGACTCGAACTCAGAAATCCGCCTGCCTCTGCCTC  300

seq1  CCGAGTGCTGGGATTAAAGGTGTACACCACCACGCCCGGCTTTGTTTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTGCTGGGATTAAAGGTGTACACCACCACGCCCGGCTTTGTTTTTT  350

seq1  TGAGACCGAGTTTCACTATGTAGCTCAGTCTGGCTACAAGCATGTTCTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCGAGTTTCACTATGTAGCTCAGTCTGGCTACAAGCATGTTCTGA  400

seq1  AGACCCTATTGACCTTGACTTTGTCCCCCTGCCTCAGCCTCATAACTGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTATTGACCTTGACTTTGTCCCCCTGCCTCAGCCTCATAACTGGA  450

seq1  CAGTTTGCAGGCTTGTACCCCCATGCCCATCTATTGTGCTTTCTTTTCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGCAGGCTTGTACCCCCATGCCCATCTATTGTGCTTTCTTTTCTT  500

seq1  TTTTAACCCCCAGCTGTTTCTGTGGAGGCTGGCTCCAGAGGATGCTGTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACCCCCAGCTGTTTCTGTGGAGGCTGGCTCCAGAGGATGCTGTAG  550

seq1  TGCCTCTGTATATCACCTTCTGGGCTTCTCTCAACCTTTGTCCTGCTACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGTATATCACCTTCTGGGCTTCTCTCAACCTTTGTCCTGCTACC  600

seq1  AAGTGGTACCCATCCCAGTTCTCTTTTACCCATATCGTTTTACCTTTTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTACCCATCCCAGTTCTCTTTTACCCATATCGTTTTACCTTTTCA  650

seq1  TTGTTATTAGGTACAGTCATACTGTTATACACATAATAACCGTCCGTCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATTAGGTACAGTCATACTGTTATACACATAATAACCGTCCGTCTG  700

seq1  TCTTCAGAACTTGTGCATCTTTCGAACTGAAACTCTATGGGTTAAAACGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGAACTTGTGCATCTTTCGAACTGAAACTCTATGGGTTAAAACGG  750

seq1  GTCTTCTTCCTCTCCTTGAGCCCTTCCTGACCAGGCTTCTATATTCTGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTTCCTCTCCTTGAGCCCTTCCTGACCAGGCTTCTATATTCTGTC  800

seq1  TTTATGAATTC  810
      |||||||||||
seq2  TTTATGAATTC  811

seq1: chr4_115753653_115754576
seq2: B6Ng01-039M12.g_67_989

seq1  GAATTCCAGGACAGGCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGGCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACC  50

seq1  AGAAAAAAAAATTCAGTTTGCAAGGCCTTGGTACATTCATCTAGCTTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAAATTCAGTTTGCAAGGCCTTGGTACATTCATCTAGCTTAAG  100

seq1  AGAAGCCAAATAAAAAGGATTAAGTGGGGAAGGTCTGGAGAGACATATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCAAATAAAAAGGATTAAGTGGGGAAGGTCTGGAGAGACATATGG  150

seq1  TTCAGCGGTCAACAGCGCTGGCTGCTTTTACTGATAACCTAGGTGCAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCGGTCAACAGCGCTGGCTGCTTTTACTGATAACCTAGGTGCAGTT  200

seq1  CCCAGCACCTTCATGGCACCTCACAACTGTCTGAGACAAACTCCACTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACCTTCATGGCACCTCACAACTGTCTGAGACAAACTCCACTTCC  250

seq1  AAGAAATCCAATGCCCCTTTCTGGCCTCACTGAGCACCATGCCTACATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATCCAATGCCCCTTTCTGGCCTCACTGAGCACCATGCCTACATGG  300

seq1  TACATAGGTATACATGTAGGCAAAACAACCATACACATAAAATTAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGGTATACATGTAGGCAAAACAACCATACACATAAAATTAAAATA  350

seq1  AAAAGGACTAAGGACTAGTCATCGTGGTTGAAGCTGCTCACTGTATACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGACTAAGGACTAGTCATCGTGGTTGAAGCTGCTCACTGTATACTG  400

seq1  ATCTGTGTGAACATAGGTGAGAGTATATATAGGACAAGGGAGAGGGGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGTGAACATAGGTGAGAGTATATATAGGACAAGGGAGAGGGGTAG  450

seq1  TCCTGCCTGGTTTTGCAGTAGTCAGCCTATGTGTCCCTATAATAAGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTGGTTTTGCAGTAGTCAGCCTATGTGTCCCTATAATAAGGAGA  500

seq1  AGAAACATTGATCAGAACTTCAAGATTATCCTTAGCTACATACTGTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATTGATCAGAACTTCAAGATTATCCTTAGCTACATACTGTTTCA  550

seq1  CGGCCAGCCTTCACTGCATAAAACTGAGACCCTGACTTCAAAAAGACTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCAGCCTTCACTGCATAAAACTGAGACCCTGACTTCAAAAAGACTCC  600

seq1  TGTGAAGTAAAAAACATTCAATGTCATAATAATATGTGGAAAAGTAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGTAAAAAACATTCAATGTCATAATAATATGTGGAAAAGTAGAAT  650

seq1  TTTACCTCGTTAGTAAACCTTTTTTTGGTTACAGAATGTCATTCAGATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTCGTTAGTAAACCTTTTTTTGGTTACAGAATGTCATTCAGATAT  700

seq1  CAAACAGACGCCTGAAATATCAAACACCTTAATGCTTTATTGGTTGGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGACGCCTGAAATATCAAACACCTTAATGCTTTATTGGTTGGAAC  750

seq1  AAACTGTCACAATATTTATTATTCACTCATTCATTTATTTGTTGAGGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTCACAATATTTATTATTCACTCATTCATTTATTTGTTGAGGCAG  800

seq1  GATCTTAACTATATAGTACTGGACCAGGCTGGCTGGCTCTCCCAGGCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTAACTATATAGTACTGGACCAGGCTGGCTGGCTCTCCCAGGCTCA  850

seq1  CAGAGATCCTCCTGTTTCTGCTTCCCAGGTTATGGGATTAAAGGGGTTTT  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAGAGATCCTCCTGTTTCTGCTTCCCAGGTTATGGGATTAAAGGGG-TTT  899

seq1  TTTTGTTGTTGTTTTTGTTTTTGT  924
      ||||| ||||||||||||||| ||
seq2  TTTTGGTGTTGTTTTTGTTTTGGT  923