BAC Information

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BAC

Clone NameB6Ng01-039M15
Chromosome3 (Build37)4 (Build37)
Map Location 41,059,242 - 41,059,73795,796,922 - 95,797,737
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039M15.bB6Ng01-039M15.g
ACCDH866954DH866955
length940822
definitionDH866954|Mus musculus domesticus DNA, BAC clone: B6Ng01-039M15, 5' end.DH866955|Mus musculus domesticus DNA, BAC clone: B6Ng01-039M15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,242 - 41,059,737)(95,796,922 - 95,797,737)
sequence
gaattctttgtttagctctgagcccctgtttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatagattggatattagtccc
ctatctgatttaggataggtaaagaacctttcccaatctgttggtggcct
ttttgtcttattgatggtgtcttttgccttgcagaagctttgcagtttca
tgaggtcccatttgtcaattcttgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtgcccttatatttgaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttga
tccacttagatttgaccttagtacaaggagataggaatggatcgattccc
attcttctacattataaccaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcaaagatcaacg
gagccttcatttaagagacatgacttgataaaagaatttgactttattat
ccttgaatgaaacatttctcttgttattccatcatgttctgacaacacac
tatgcatgatttcaattgctttaaatctgtcaaggttgatggaggagttg
ataggtcatcttgataaataagcattgttgctttaatgtgcaagcatgtg
ctcattgctcatttccttagtctatcaaacactagagtatgaagcacata
cacaagctgttcacttgatcagaattttctataatatcattcttatgtta
ttgatacatgtttaatatatgtccttgcttaatgtgcaaatactgacttt
atcaactacagggaaaagtacactgaagtctgcaactccactaggaattt
ccctgtttgtccccaggtaaccccccacactcatttcttc
gaattcatgaaattcttagacaaatggatggaattagaaaatataatcct
gagtgaggtaacccaatcacaaaagaacacacatgttatgcactcatata
taagtggatatcaacccaaaagcttggaatgcccaaaatacaattcacag
actacatgaagctcaagaagaaggaacgccaaagtgtggatgcataaaaa
caggtggatgggggatagaatagggagttttcagagaggaaatgggaaaa
gaggataacattttaaatgtaaagaatatattcaataaaataaataaata
aaagaataagaaaaagcacacatttttaaagaagcaaagaaagaaattat
agattttgtattagatactttcttcatttacgtttcaaatgccatcccca
aagccatctataccctccccccaccctgctccccaacccacccactcctg
cttcctgactctggcattcccctgtactgtggtgtatgatcttcacaaga
ccaagggcctctcctcccattgatggctgactaggtcatcctctgctaca
tatgcaactagagacacagctctggggggtactggttagttcatattgtt
gttcctcttataggggttgaagatctctttagctccttgggtactttctc
tagctcctttcattaggggccctgtgttcccatccaatagatgactgtaa
gcatccactttctgtatttgccaggcactggcatagcctcacaagataga
gcttttgtcagggttcctgtcagcaaaatctttctggcatatgccgtagt
gtctgggttttgtggttgtata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059242_41059737
seq2: B6Ng01-039M15.b_48_544 (reverse)

seq1  TTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCAT  50
      |||||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  TTGATCTTTGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCAT  50

seq1  TTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGC  100
      ||||||||||||||||||||||||||||| ||||| ||||||||||||| 
seq2  TTTCAACAAATGGTGCTGGCACAACTGGTGGTTATAATGTAGAAGAATGG  100

seq1  GAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  150
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAATCGATCCATTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  150

seq1  AAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT  200
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT  200

seq1  GGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAA  250
      ||||||||||||  || ||| || ||||||||||||||||||| ||||||
seq2  GGGGAAAAGCCTCAAATATAAGGGCACAGGGGAAAAATTCCTGAATAGAA  250

seq1  CAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATG  300
      ||||||||||||||||||||||||  ||||| ||||||||||||||||||
seq2  CAGCAATGGCTTGTGCTGTAAGATCAAGAATTGACAAATGGGACCTCATG  300

seq1  AAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG  350
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAACTGCAAAGCTTCTGCAAGGCAAAAGACACCATCAATAAGACAAAAAG  350

seq1  G-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  399
      | |||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCCACCAACAGATTGGGAAAGGTTCTTTACCTATCCTAAATCAGATAGGG  400

seq1  GACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAA  449
      |||||||||||||| ||||| ||||||||||||||||||| |||||||||
seq2  GACTAATATCCAATCTATATAAAGAACTCAAGAAGGTGGACTCCAGAAAA  450

seq1  TCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  496
      ||||||||||||||||||||  |||||||||||||||||||||||||
seq2  TCAAATAACCCCATTAAAAACAGGGGCTCAGAGCTAAACAAAGAATT  497

seq1: chr4_95796922_95797737
seq2: B6Ng01-039M15.g_67_888

seq1  GAATTCATGAAATTCTTAGACAAATGGATGGAATTAGAAAATATAATCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAAATTCTTAGACAAATGGATGGAATTAGAAAATATAATCCT  50

seq1  GAGTGAGGTAACCCAATCACAAAAGAACACACATGTTATGCACTCATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGGTAACCCAATCACAAAAGAACACACATGTTATGCACTCATATA  100

seq1  TAAGTGGATATCAACCCAAAAGCTTGGAATGCCCAAAATACAATTCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGATATCAACCCAAAAGCTTGGAATGCCCAAAATACAATTCACAG  150

seq1  ACTACATGAAGCTCAAGAAGAAGGAACGCCAAAGTGTGGATGCATAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATGAAGCTCAAGAAGAAGGAACGCCAAAGTGTGGATGCATAAAAA  200

seq1  CAGGTGGATGGGGGATAGAATAGGGAGTTTTCAGAGAGGAAATGGGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGATGGGGGATAGAATAGGGAGTTTTCAGAGAGGAAATGGGAAAA  250

seq1  GAGGATAACATTTTAAATGTAAAGAATATATTCAATAAAATAAATAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATAACATTTTAAATGTAAAGAATATATTCAATAAAATAAATAAATA  300

seq1  AAAGAATAAGAAAAAGCACACATTTTTAAAGAAGCAAAGAAAGAAATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATAAGAAAAAGCACACATTTTTAAAGAAGCAAAGAAAGAAATTAT  350

seq1  AGATTTTGTATTAGATACTTTCTTCATTTACGTTTCAAATGCCATCCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTGTATTAGATACTTTCTTCATTTACGTTTCAAATGCCATCCCCA  400

seq1  AAGCCATCTATACCCTCCCCCCACCCTGCTCCCCAACCCACCCACTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATCTATACCCTCCCCCCACCCTGCTCCCCAACCCACCCACTCCTG  450

seq1  CTTCCTGACTCTGGCATTCCCCTGTACTGTGGTGTATGATCTTCACAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGACTCTGGCATTCCCCTGTACTGTGGTGTATGATCTTCACAAGA  500

seq1  CCAAGGGCCTCTCCTCCCATTGATGGCTGACTAGGTCATCCTCTGCTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGCCTCTCCTCCCATTGATGGCTGACTAGGTCATCCTCTGCTACA  550

seq1  TATGCAACTAGAGACACAGCTCTGGGGGGTACTGGTTAGTTCATATTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAACTAGAGACACAGCTCTGGGGGGTACTGGTTAGTTCATATTGTT  600

seq1  GTTCCTCTTATA-GGGTTGAAGATCTCTTTAGCTCCTTGGGTACTTTCTC  649
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCTTATAGGGGTTGAAGATCTCTTTAGCTCCTTGGGTACTTTCTC  650

seq1  TAGCTCC-TTCATTAGGGGCCCTGTGTT-CCATCCAATAGATGACTGTAA  697
      ||||||| |||||||||||||||||||| |||||||||||||||||||||
seq2  TAGCTCCTTTCATTAGGGGCCCTGTGTTCCCATCCAATAGATGACTGTAA  700

seq1  GCATCCAC-TTCTGTATTTGCCAGGCACTGGCATAGCCTCACAAGAGAGA  746
      |||||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  GCATCCACTTTCTGTATTTGCCAGGCACTGGCATAGCCTCACAAGATAGA  750

seq1  GC-TTTGTCAGGG-TCCTGTCAGCAAAATCTTTCTGGCATATGCCGTAGT  794
      || |||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGTCAGGGTTCCTGTCAGCAAAATCTTTCTGGCATATGCCGTAGT  800

seq1  GTCTGGGTTTTGTGGTTGTATA  816
      ||||||||||||||||||||||
seq2  GTCTGGGTTTTGTGGTTGTATA  822