BAC Information

Click to search

BAC

Clone NameB6Ng01-039N15
Chromosome4 (Build37)
Map Location 122,798,967 - 122,940,840
singlet/doubletdoublet
Overlap geneBmp8b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197
Upstream geneLOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1, Oxct2b
Downstream geneLOC622334, Pabpc4, Bmp8a, Oxct2a, Macf1, D830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039N15.bB6Ng01-039N15.g
ACCDH866996DH866997
length1,112967
definitionDH866996|Mus musculus domesticus DNA, BAC clone: B6Ng01-039N15, 5' end.DH866997|Mus musculus domesticus DNA, BAC clone: B6Ng01-039N15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,798,967 - 122,800,079)(122,940,021 - 122,940,840)
sequence
gaattcctgtggctacggaggtccctgtttctgtcacctcagacctgctg
gctggagtgcttgggttggtctccagatgaggaaacaggttcataggtgt
catgccaccatccacaagtcaagtcccccccacctcccctctctgttgtc
tctgtcttccagggcacagcatagatcctggcctagctggtctgcttgga
cgacaagcaccacgctccagacagcctttcatggttggtttcttcagggc
caaccagagtcctgtgcgggcccctcgaacagcaagaccactgaagaaga
agcagctaaatcaaatcaaccagctgccgcactccaacaaacacctagga
atccttggtgagagcaaggctgggatctggggccttctttagagtggagt
accttccagtccctcagctagcccttgtcccccagagtatgcttagcagg
gagggtgggctgcaaccaacagtctgcagaggaaagcagaagctgtgtgt
gccctggggtcctgttggggtgttctttggaacgtctggaggccccccag
gcagcaaggtgagagatcttgctgaacacagccatagcctgtggtgatgg
agccacagaaggactgttgagctgggtcacggcacgagcagggatccaga
agtgggacctgtgattccagggctttagtttcctcttgtccttcattgta
aatgtgcctcctgtcacatcaccactgggagtacccatggcaactctgta
gggcaggacccctgaatagactgtaccttctcgtccctgcagatgatggc
cacggttctcacggcagagaagtttgccgcagcatgagctctatgtcagc
ttccgtgaccttggctggctggtaatttctgcctttcctctgcctgctac
ctgcagaccctggtgtctccagggtggggggtggagctactgtgccttta
atgtgcatcaaagttatgaaacggaagtggtcagtgggctctgcccagta
agcagtcagcactccaacaaggaaactgaagctgggtgggccagggcctc
tgggctctcctgctacgctggctccaggagtcataagggcagctggtgga
ggaatcacgaga
gaattctaggacagcaagactacacagagaaaccctgcctcgaaaaacca
aaagccaaaccaaactcaaccaaaccaaccaaccgaacaaaaaagcaatc
tgtaggtgctgtgatatatatatatatatatatgcaccacacacactcga
aataagttttttgatttttaagagaagaaaaggcctcatgtagcccaggc
ttacctgtagcttgttatgtagctgaggtgaccatgaacttcaaatcttc
cttcctctatcttgcaagtgtggagtcttcaggtgtgcactgtttcagaa
caaattttaaaggtttctccggcagcctccagcctctgcctccctcggct
cccccctcccccacctcccacggcccctcccaccactttccagttcagct
ctgccactttgaaatcttcagcttgccttttttctagaaagctttcttgt
ttttcagtgtggacctcagagctgactccttccctgtgttcacgaggaca
cacgagggtctggggttttaacttaatttaattagtttattaacttgctt
ttgagacagggtctcaatgtagaccaggctcatcttgaacttacagggat
ctgcttgcctctgcctccggagagctgggactaaaggcttgcaccccctc
ccctgggctaattttttttttttttttttccgagacagggcttctctgtg
tagccctggctgtcctggaactcactttgtagaccagactggcctcgaac
tcagaaatctgcctgcctctgcctctgcctcccaagtgctgggattaaag
gcgtgcgccaccacgcccggctccccaggcctatttatgtctgagataag
atcgtgccatgcagctgtgtaaactggcttcaactcgagttctccctgct
tctgccttctggcgctgagatacaagtgtgtaccatcaagcccagcccag
gtatcagactcttgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_122798967_122800079
seq2: B6Ng01-039N15.b_45_1156

seq1  GAATTCCTGTGGCTACGGAGGTCCCTGTTTCTGTCACCTCAGACCTGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGGCTACGGAGGTCCCTGTTTCTGTCACCTCAGACCTGCTG  50

seq1  GCTGGAGTGCTTGGGTTGGTCTCCAGATGAGGAAACAGGTTCATAGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGTGCTTGGGTTGGTCTCCAGATGAGGAAACAGGTTCATAGGTGT  100

seq1  CATGCCACCATCCACAAGTCAAGTCCCCCCCACCTCCCCTCTCTGTTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCACCATCCACAAGTCAAGTCCCCCCCACCTCCCCTCTCTGTTGTC  150

seq1  TCTGTCTTCCAGGGCACAGCATAGATCCTGGCCTAGCTGGTCTGCTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTCCAGGGCACAGCATAGATCCTGGCCTAGCTGGTCTGCTTGGA  200

seq1  CGACAAGCACCACGCTCCAGACAGCCTTTCATGGTTGGTTTCTTCAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAAGCACCACGCTCCAGACAGCCTTTCATGGTTGGTTTCTTCAGGGC  250

seq1  CAACCAGAGTCCTGTGCGGGCCCCTCGAACAGCAAGACCACTGAAGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGAGTCCTGTGCGGGCCCCTCGAACAGCAAGACCACTGAAGAAGA  300

seq1  AGCAGCTAAATCAAATCAACCAGCTGCCGCACTCCAACAAACACCTAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTAAATCAAATCAACCAGCTGCCGCACTCCAACAAACACCTAGGA  350

seq1  ATCCTTGGTGAGAGCAAGGCTGGGATCTGGGGCCTTCTTTAGAGTGGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGGTGAGAGCAAGGCTGGGATCTGGGGCCTTCTTTAGAGTGGAGT  400

seq1  ACCTTCCAGTCCCTCAGCTAGCCCTTGTCCCCCAGAGTATGCTTAGCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCAGTCCCTCAGCTAGCCCTTGTCCCCCAGAGTATGCTTAGCAGG  450

seq1  GAGGGTGGGCTGCAACCAACAGTCTGCAGAGGAAAGCAGAAGCTGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGGGCTGCAACCAACAGTCTGCAGAGGAAAGCAGAAGCTGTGTGT  500

seq1  GCCCTGGGGTCCTGTTGGGGTGTTCTTTGGAACGTCTGGAGGCCCCCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGGGTCCTGTTGGGGTGTTCTTTGGAACGTCTGGAGGCCCCCCAG  550

seq1  GCAGCAAGGTGAGAGATCTTGCTGAACACAGCCATAGCCTGTGGTGATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAAGGTGAGAGATCTTGCTGAACACAGCCATAGCCTGTGGTGATGG  600

seq1  AGCCACAGAAGGACTGTTGAGCTGGGTCACGGCACGAGCAGGGATCCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGAAGGACTGTTGAGCTGGGTCACGGCACGAGCAGGGATCCAGA  650

seq1  AGTGGGACCTGTGATTCCAGGGCTTTAGTTTCCTCTTGTCCTTCATTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGACCTGTGATTCCAGGGCTTTAGTTTCCTCTTGTCCTTCATTGTA  700

seq1  AATGTGCCTCCTGTCACATCACCACTGGGAGTACCCATGGCAACTCTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCCTCCTGTCACATCACCACTGGGAGTACCCATGGCAACTCTGTA  750

seq1  GGGCAGGACCCCTGAATAGACTGTACCTTCTCGTCCCTGCAGATGATGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGACCCCTGAATAGACTGTACCTTCTCGTCCCTGCAGATGATGGC  800

seq1  CACGGTTCTCACGGCAGAGAAGTTTGCCGCAGGCATGAGCTCTATGTCAG  850
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CACGGTTCTCACGGCAGAGAAGTTTGCCGCA-GCATGAGCTCTATGTCAG  849

seq1  CTTCCGTGACCTTGGCTGGCTGGTAATTTCTGCCTTTCCTCTGCCTGCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGTGACCTTGGCTGGCTGGTAATTTCTGCCTTTCCTCTGCCTGCTA  899

seq1  CCTGCAGACCCTGGTGTCTCCAGGGTGGGGGGTGGAGCTACTGTGCCTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGACCCTGGTGTCTCCAGGGTGGGGGGTGGAGCTACTGTGCCTTT  949

seq1  AATGTGCATCAAAGTTATGAAAACGGAAGTGGTCAGTGGGCTCTGCCCAG  1000
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AATGTGCATCAAAGTTATG-AAACGGAAGTGGTCAGTGGGCTCTGCCCAG  998

seq1  TAAGCAGTCAGCACTCCAACAAGGAAACTGAGGCTGGGTGGG-CAGGGCC  1049
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  TAAGCAGTCAGCACTCCAACAAGGAAACTGAAGCTGGGTGGGCCAGGGCC  1048

seq1  TCTGGGCTCTTCCTGCTACAGCT-GCTGCAGGAGGCATAGGGGCAGCT-G  1097
      ||||||||| ||||||||| ||| ||| |||||| |||| |||||||| |
seq2  TCTGGGCTC-TCCTGCTAC-GCTGGCTCCAGGAGTCATAAGGGCAGCTGG  1096

seq1  TGGAGGAATCAGGAGA  1113
      ||||||||||| ||||
seq2  TGGAGGAATCACGAGA  1112

seq1: chr4_122940021_122940840
seq2: B6Ng01-039N15.g_68_887 (reverse)

seq1  CCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGC  50

seq1  AGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGTCTGGTCTACAAAGTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGTCTGGTCTACAAAGTGAG  100

seq1  TTCCAGGACAGCCAGGGCTACACAGAGAAGCCCTGTCTCGGAAAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGACAGCCAGGGCTACACAGAGAAGCCCTGTCTCGGAAAAAAAAA  150

seq1  AAAAAAAAATTAGCCCAGGGGAGGGGGTGCAAGCCTTTAGTCCCAGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATTAGCCCAGGGGAGGGGGTGCAAGCCTTTAGTCCCAGCTCT  200

seq1  CCGGAGGCAGAGGCAAGCAGATCCCTGTAAGTTCAAGATGAGCCTGGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGGCAGAGGCAAGCAGATCCCTGTAAGTTCAAGATGAGCCTGGTCT  250

seq1  ACATTGAGACCCTGTCTCAAAAGCAAGTTAATAAACTAATTAAATTAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGAGACCCTGTCTCAAAAGCAAGTTAATAAACTAATTAAATTAAGT  300

seq1  TAAAACCCCAGACCCTCGTGTGTCCTCGTGAACACAGGGAAGGAGTCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCCCAGACCCTCGTGTGTCCTCGTGAACACAGGGAAGGAGTCAGC  350

seq1  TCTGAGGTCCACACTGAAAAACAAGAAAGCTTTCTAGAAAAAAGGCAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGTCCACACTGAAAAACAAGAAAGCTTTCTAGAAAAAAGGCAAGC  400

seq1  TGAAGATTTCAAAGTGGCAGAGCTGAACTGGAAAGTGGTGGGAGGGGCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATTTCAAAGTGGCAGAGCTGAACTGGAAAGTGGTGGGAGGGGCCG  450

seq1  TGGGAGGTGGGGGAGGGGGGAGCCGAGGGAGGCAGAGGCTGGAGGCTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGTGGGGGAGGGGGGAGCCGAGGGAGGCAGAGGCTGGAGGCTGCC  500

seq1  GGAGAAACCTTTAAAATTTGTTCTGAAACAGTGCACACCTGAAGACTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAACCTTTAAAATTTGTTCTGAAACAGTGCACACCTGAAGACTCCA  550

seq1  CACTTGCAAGATAGAGGAAGGAAGATTTGAAGTTCATGGTCACCTCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCAAGATAGAGGAAGGAAGATTTGAAGTTCATGGTCACCTCAGCT  600

seq1  ACATAACAAGCTACAGGTAAGCCTGGGCTACATGAGGCCTTTTCTTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACAAGCTACAGGTAAGCCTGGGCTACATGAGGCCTTTTCTTCTCT  650

seq1  TAAAAATCAAAAAACTTATTTCGAGTGTGTGTGGTGCATATATATATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCAAAAAACTTATTTCGAGTGTGTGTGGTGCATATATATATATA  700

seq1  TATATATCACAGCACCTACAGATTGCTTTTTTGTTCGGTTGGTTGGTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATCACAGCACCTACAGATTGCTTTTTTGTTCGGTTGGTTGGTTTG  750

seq1  GTTGAGTTTGGTTTGGCTTTTGGTTTTTCGAGGCAGGGTTTCTCTGTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGTTTGGTTTGGCTTTTGGTTTTTCGAGGCAGGGTTTCTCTGTGTA  800

seq1  GTCTTGCTGTCCTAGAATTC  820
      ||||||||||||||||||||
seq2  GTCTTGCTGTCCTAGAATTC  820