BAC Information

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BAC

Clone NameB6Ng01-039O24
Chromosome4 (Build37)
Map Location 91,860,471 - 91,953,426
singlet/doubletdoublet
Overlap geneLOC68280
Upstream geneLOC100042274, Elavl2, LOC664864, LOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik
Downstream geneLOC620269, LOC384125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039O24.bB6Ng01-039O24.g
ACCDH867061DH867062
length1,1091,070
definitionDH867061|Mus musculus domesticus DNA, BAC clone: B6Ng01-039O24, 5' end.DH867062|Mus musculus domesticus DNA, BAC clone: B6Ng01-039O24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,860,471 - 91,861,138)(91,952,391 - 91,953,426)
sequence
gaattcccctataccttccccctgccctcttccccaacacatccactcct
gcttcctggccctgatatttccctttattggggcatataatcttcacaag
acctaggatacatgctccactatgttcatagcagccttatttataatagc
cagaagctggaaagaacccagatgcccctcaacagaggaatggatataga
aaatgtggtacatttacacaatggaacactactcagctattaaaaagaat
gaatttatgaaattcctaggcaaatggaggatatctagaggatatcgtcc
tgagtgaggtaacccaatgcccccccccccaaaaaaaaaacccacacatg
gtatgcactcactgataagtggatattagctcagaaacttagaataccca
agatacaatttgaaaaagacatgaaacccaagaagaaggaagaccaaagt
gaggttacttcattccttcttagaatggggaacaaaatatccatggaagg
agttacagagacaaagttcagagctgagacagaaggaaggaccatctaga
gacagccccacccaggaatccatcccataaacaaccaccaaacccagact
ctattacatatgccaacaagattttgctgacaggaccctgatatagctat
ctcttgtgaagctatgccagtgcctggcatatagaagtgaacacacacac
cctggatagaacacagggtctccaatgaagaagctagagaaagtacccaa
gagctgaagggtatgcaaccctataggaggaacaacaatatgaactaact
agtacccccagagatcatgtctctagctgcatatatagcagaggatggcc
taattggtcaacaatggaaggagaggcccttgctttttcttacaagagtc
gctatgctgtgttcatggtctttcgtcacagcatataacaatgatgacta
tactatattacactggctttttaaaatgagtttggtattttttccctttt
tgtttgaggaattgtttgcattctaattgtcatgttgacttaataaagca
ttagtcaacaaaaattattacttttttctttgtggataatttaactactg
tcgccacat
gaattctcagtagtcttttaaggtgactgtagctaaaactccaataatgg
gggtatatagagtctaaactaaccatctcctataaccaatcaagacttcc
aatggaggaattgggacatcaaccaggctttgaagtttggacatacaatc
tgccctgacagcaataagtactgagcttgaggtatcacagaaattgtggg
agtgtataacaaatgactggcacagcatcagaccaatggtaggagaggga
tttctcctctgaaggtgacttgaggaccagaaccagaggctacgtggccc
acacttacgatagagacaaacacaactgggaaaaatgctaatacaatgat
gaataatgttattctactatactcatagattggtgcctaacccagttgtc
accactgaggctgtatacattaaatgatgaaaacagaataagagacacac
acacagtcaaatggcattttatcagctaaatgattgagagatgtttaata
tcaatattccaaaaataaatttatcattcattatattatatacatcttta
tagccactgatacataaaatatttttttacaaatgcacacacacgcatac
acacacacacacacatacacacacacacacacacacacacacacacacac
acacacacacacatatcatatcatataatggcagacctatcagaattgta
ccagatttctaaacagagtctctaaaagccagaagatcctggacagatgt
tatacagaccctaagagaacacaaatgccagaccaggctattacacccag
caaaactcacaattaccatagacggagaaaccaaggtattccagacaaaa
tcaaatttaaacaatatctttccatgaatccagccctacagaggataaga
gaaggaaaagtccacaaaaggacggaactaccaccccccaaagcaataat
ttatcttttcacaaagagagaaacacacaatttattctcacctctacaca
aaaataacagtacacatcattgatcctaatattttctgaacatcaataag
actcattccctaataaaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_91860471_91861138
seq2: B6Ng01-039O24.b_495_1155

seq1  GTGAGGTTACTTCATTCCTTCTTAGAATGGGGAACAAAATATCCATGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTTACTTCATTCCTTCTTAGAATGGGGAACAAAATATCCATGGAA  50

seq1  GGAGTTACAGAGACAAAGTTCAGAGCTGAGACAGAAGGAAGGACCATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTACAGAGACAAAGTTCAGAGCTGAGACAGAAGGAAGGACCATCTA  100

seq1  GAGACAGCCCCACCCAGGAATCCATCCCATAAACAACCACCAAACCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGCCCCACCCAGGAATCCATCCCATAAACAACCACCAAACCCAGA  150

seq1  CTCTATTACATATGCCAACAAGATTTTGCTGACAGGACCCTGATATAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTACATATGCCAACAAGATTTTGCTGACAGGACCCTGATATAGCT  200

seq1  ATCTCTTGTGAAGCTATGCCAGTGCCTGGCATATAGAAGTGAACACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTGTGAAGCTATGCCAGTGCCTGGCATATAGAAGTGAACACACAC  250

seq1  ACCCTGGATAGAACACAGGGTCTCCAATGAAGAAGCTAGAGAAAGTACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGATAGAACACAGGGTCTCCAATGAAGAAGCTAGAGAAAGTACCC  300

seq1  AAGAGCTGAAGGGTATGCAACCCTATAGGAGGAACAACAATATGAACTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTGAAGGGTATGCAACCCTATAGGAGGAACAACAATATGAACTAA  350

seq1  CTAGTACCCCCAGAGATCATGTCTCTAGCTGCATATATAGCAGAGGATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTACCCCCAGAGATCATGTCTCTAGCTGCATATATAGCAGAGGATGG  400

seq1  CCTAATTGGTCAACAATGGAAGGAGAGGCCCTTGCTTTTTCTTACAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTGGTCAACAATGGAAGGAGAGGCCCTTGCTTTTTCTTACAAGAG  450

seq1  TCGCTATGCTGTGTTCATGGTCTTTCGTCACAGCAATATAACAATGATGA  500
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCGCTATGCTGTGTTCATGGTCTTTCGTCACAGC-ATATAACAATGATGA  499

seq1  CTATACTATATTAACACTGGCTTTTTAAAATGAGTTTGGTAATTTTTTCC  550
      |||||||||||| ||||||||||||||||||||||||||||  ||||| |
seq2  CTATACTATATT-ACACTGGCTTTTTAAAATGAGTTTGGTA--TTTTTTC  546

seq1  CCTTTTTGTTTTGAGGAATTGTTTGCATTCT-ATTGTCATTGTGACTTAA  599
      |||||||| |||||||||||||||||||||| ||||||||  ||||||||
seq2  CCTTTTTG-TTTGAGGAATTGTTTGCATTCTAATTGTCATGTTGACTTAA  595

seq1  TAAAGCATTTAGTCAAC-AAAATTATTAACTTTTTCTTTGTGGATAATTT  648
      ||||||| ||||||||| ||||||||||  ||||||||||||||||| ||
seq2  TAAAGCA-TTAGTCAACAAAAATTATTACTTTTTTCTTTGTGGATAA-TT  643

seq1  TAACTACTGTTTGGCCACAT  668
      |||||||||  | |||||||
seq2  TAACTACTG--TCGCCACAT  661

seq1: chr4_91952391_91953426
seq2: B6Ng01-039O24.g_116_1136 (reverse)

seq1  CTTTTTATTAGGGAATTGAGTC-TATTGATGTTCAG-AGATATTAGGGAT  48
      ||||||||||||||| |||||| ||||||||||||| | |||||| ||||
seq2  CTTTTTATTAGGGAA-TGAGTCTTATTGATGTTCAGAAAATATTA-GGAT  48

seq1  CAATGATTGTTGGTTACTGTTATTTTTGTTGTTAGAGGTGAGAATAAATT  98
      ||||||    ||  |||||||||||||||   |||||||||||||||| |
seq2  CAATGA----TGTGTACTGTTATTTTTGT--GTAGAGGTGAGAATAAA-T  91

seq1  TGTGTGTTTCTCTTCTTTTGTGAAAAGATAAATTATTTGCTTTTTGGGGG  148
      |||||||||||||   ||||||||||||||||||| ||||  ||||||||
seq2  TGTGTGTTTCTCT--CTTTGTGAAAAGATAAATTA-TTGC--TTTGGGGG  136

seq1  GTGGTAGTTTCCGTCCTTTTGTTGGACTTTTCCTTCTCTTATCCTCTGTA  198
      ||||||| ||||||||||||| ||||||||||||||||||||||||||||
seq2  GTGGTAG-TTCCGTCCTTTTG-TGGACTTTTCCTTCTCTTATCCTCTGTA  184

seq1  GGGCTGGATTCATGGAAAGATATTGTTTAAATTTGATTTTGTCTTGGAAT  248
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGGCTGGATTCATGGAAAGATATTGTTTAAATTTGATTTTGTC-TGGAAT  233

seq1  ACCTTGGTTTCTCCGTCTATGGTAATTGTGAGTTTTGCTGGGTGTAATAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGTTTCTCCGTCTATGGTAATTGTGAGTTTTGCTGGGTGTAATAG  283

seq1  CCTGGTCTGGCATTTGTGTTCTCTTAGGGTCTGTATAACATCTGTCCAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTGGCATTTGTGTTCTCTTAGGGTCTGTATAACATCTGTCCAGG  333

seq1  ATCTTCTGGCTTTTAGAGACTCTGTTTAGAAATCTGGTACAATTCTGATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTGGCTTTTAGAGACTCTGTTTAGAAATCTGGTACAATTCTGATA  383

seq1  GGTCTGCCATTATATGATATGATATGTGTGTGTGTGTGTGTGTGTGTGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGCCATTATATGATATGATATGTGTGTGTGTGTGTGTGTGTGTGTG  433

seq1  TGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTATGCGTGTGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTATGCGTGTGTG  483

seq1  TGCATTTGTAAAAAAATATTTTATGTATCAGTGGCTATAAAGATGTATAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTGTAAAAAAATATTTTATGTATCAGTGGCTATAAAGATGTATAT  533

seq1  AATATAATGAATGATAAATTTATTTTTGGAATATTGATATTAAACATCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATGAATGATAAATTTATTTTTGGAATATTGATATTAAACATCTC  583

seq1  TCAATCATTTAGCTGATAAAATGCCATTTGACTGTGTGTGTGTCTCTTAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCATTTAGCTGATAAAATGCCATTTGACTGTGTGTGTGTCTCTTAT  633

seq1  TCTGTTTTCATCATTTAATGTATACAGCCTCAGTGGTGACAACTGGGTTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTCATCATTTAATGTATACAGCCTCAGTGGTGACAACTGGGTTA  683

seq1  GGCACCAATCTATGAGTATAGTAGAATAACATTATTCATCATTGTATTAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCAATCTATGAGTATAGTAGAATAACATTATTCATCATTGTATTAG  733

seq1  CATTTTTCCCAGTTGTGTTTGTCTCTATCGTAAGTGTGGGCCACGTAGCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCCCAGTTGTGTTTGTCTCTATCGTAAGTGTGGGCCACGTAGCC  783

seq1  TCTGGTTCTGGTCCTCAAGTCACCTTCAGAGGAGAAATCCCTCTCCTACC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTCTGGTCCTCAAGTCACCTTCAGAGGAGAAATCCCTCTCCTACC  833

seq1  ATTGGTCTGATGCTGTGCCAGTCATTTGTTATACACTCCCACAATTTCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTCTGATGCTGTGCCAGTCATTTGTTATACACTCCCACAATTTCTG  883

seq1  TGATACCTCAAGCTCAGTACTTATTGCTGTCAGGGCAGATTGTATGTCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACCTCAAGCTCAGTACTTATTGCTGTCAGGGCAGATTGTATGTCCA  933

seq1  AACTTCAAAGCCTGGTTGATGTCCCAATTCCTCCATTGGAAGTCTTGATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAAAGCCTGGTTGATGTCCCAATTCCTCCATTGGAAGTCTTGATT  983

seq1  GGTTATAGGAGATGGTTAGTTTAGACTCTATATACCCC  1036
      ||||||||||||||||||||||||||||||||||||||
seq2  GGTTATAGGAGATGGTTAGTTTAGACTCTATATACCCC  1021