BAC Information

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BAC

Clone NameB6Ng01-039P20
Chromosome4 (Build37)
Map Location 134,382,617 - 134,525,517
singlet/doubletdoublet
Overlap geneTmem57, Rhd, Tmem50a, D4Wsu53e, Syf2
Upstream geneRps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1
Downstream geneRunx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039P20.bB6Ng01-039P20.g
ACCDH867095DH867096
length6941,127
definitionDH867095|Mus musculus domesticus DNA, BAC clone: B6Ng01-039P20, 5' end.DH867096|Mus musculus domesticus DNA, BAC clone: B6Ng01-039P20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,382,617 - 134,383,308)(134,524,369 - 134,525,517)
sequence
gaattccttctgaaataagatgcacaataactggtctctccactctgaac
atctgaaagaactttcttctgacttcatcggcagataatagggaagctgt
ggatggactcctgcacggcagaggcaatggtgtgcgtccaaaggggcaca
gagacctgcttcaggagtgagagatactatagatcccatttctcttctct
tgctatcactcacaatattaaaaccaatcaatactctggtttacatgttt
taccatgataaaaactcttcttcaaagaataaattgtccttggcctttaa
aaatgccaaagaaagtggaatataagaaacttactgaactgagtaagtta
catacagcaaaaacaaaaaacagcctccagttcagctctcagcttccaga
ttgaagacagagttaacaacacacctgtttgccggtcagtgtcacatacc
attgttacttttagttaattaaggttgagaagaggcatgtttctgactaa
atctacatctagtattatgttcccacatggaatttttatcaagagatttc
ctttttcttttgttttaaaaatgtatttgttgtgtgtgcaagtgttttgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtaggtcagaggacaact
tgcaagtatctgttctctccttcctccatgtggggtcccagggt
gaattccttgggaacccgctgtctctcttcgacatatttctgcaatctgt
attgtaaatctgcttcatttgaaattcacagctaatgacctagccctcgc
acgcaggaaacagagtgaggttccggcttttagaggccaggagcctacta
gccagaacatgacaagcattacgaagtataggcctgctctaaaagcactt
aagacacagcctctgtcagaaatttccagaatatcttcaaataacatcat
ttatctgccaagaggcccgagggggcggggcggggaggacagcggtgggc
aaaggataaatgagcatttgatcaaatccataccttcagctccccaggga
gaggagtagatatgtactaacccttctcctcaccctgcccaccaggtctg
tgttgatgcctgtgtggacctaggaagcccaagcccagcagagttgtgaa
ctacggcaggcggcctgtccctgtccaccagctcctgtggatgacacaga
gactccaccttaatcagactcgatgacccaagaggtaatttgataaagcc
agcatccctgttttgggggttggcccatttaagtgaaacccaaagccggc
tctggggtaaattggaccaaggaggaatcgatcagttcatccgcactttc
tcagtttcaatggagtcaggccttaacccggttaatttttgttaaacgca
ttacccaggtactctcctcttaccagtccaatgattttgtgtcgcgcctg
aaggattgtaattgggaaccagggcgaagccctcagcgcagggtgattga
gtacagacgctgcagcccacgcggctgccacctgacactgagcagtaccg
cccgtcggtacacagcacacccctcctggacttttatcaggatcgatcgc
tgacgatgcagaacagaacacgaggcaaagcatccctgacaggaagggaa
ctctgggctttggacactggttctggatcctccccagcccagagacagtg
gggaactctggcatcctagctcagtcagcatgggtatgctagttgtccac
atcgtgatcatctcagggttgtctctactattgccaaagaacattgcagc
ttcctatggtctctctaacctaggcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_134382617_134383308
seq2: B6Ng01-039P20.b_45_737

seq1  GAATTCCTTCTGAAATAAGATGCACAATAACTGGTCTCTCCACTCTGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTGAAATAAGATGCACAATAACTGGTCTCTCCACTCTGAAC  50

seq1  ATCTGAAAGAACTTTCTTCTGACTTCATCGGCAGATAATAGGGAAGCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAAGAACTTTCTTCTGACTTCATCGGCAGATAATAGGGAAGCTGT  100

seq1  GGATGGACTCCTGCACGGCAGAGGCAATGGTGTGCGTCCAAAGGGGCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGACTCCTGCACGGCAGAGGCAATGGTGTGCGTCCAAAGGGGCACA  150

seq1  GAGACCTGCTTCAGGAGTGAGAGATACTATAGATCCCATTTCTCTTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTGCTTCAGGAGTGAGAGATACTATAGATCCCATTTCTCTTCTCT  200

seq1  TGCTATCACTCACAATATTAAAACCAATCAATACTCTGGTTTACATGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATCACTCACAATATTAAAACCAATCAATACTCTGGTTTACATGTTT  250

seq1  TACCATGATAAAAACTCTTCTTCAAAGAATAAATTGTCCTTGGCCTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGATAAAAACTCTTCTTCAAAGAATAAATTGTCCTTGGCCTTTAA  300

seq1  AAATGCCAAAGAAAGTGGAATATAAGAAACTTACTGAACTGAGTAAGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCAAAGAAAGTGGAATATAAGAAACTTACTGAACTGAGTAAGTTA  350

seq1  CATACAGCAAAAACAAAAAACAGCCTCCAGTTCAGCTCTCAGCTTCCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGCAAAAACAAAAAACAGCCTCCAGTTCAGCTCTCAGCTTCCAGA  400

seq1  TTGAAGACAGAGTTAACAACACACCTGTTTGCCGGTCAGTGTCACATACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGACAGAGTTAACAACACACCTGTTTGCCGGTCAGTGTCACATACC  450

seq1  ATTGTTACTTTTAGTTAATTAAGGTTGAGAAGAGGCATGTTTCTGACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTACTTTTAGTTAATTAAGGTTGAGAAGAGGCATGTTTCTGACTAA  500

seq1  ATCTACATCTAGTATTATGTTCCCACATGGAATTTTTATCAAGAGATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACATCTAGTATTATGTTCCCACATGGAATTTTTATCAAGAGATTTC  550

seq1  CTTTTTCTTTTGTTTTAAAAATGTATTTGTTGTGTGTGCAAGTGTTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTTTTGTTTTAAAAATGTATTTGTTGTGTGTGCAAGTGTTTTGT  600

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGTAGGTCAGAGGACAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGTAGGTCAGAGGACAACT  650

seq1  TGCCAGCATCTGTTCTCTCCTTCCTCCATGT-GGGTCCCAGGG  692
      ||| || |||||||||||||||||||||||| |||||||||||
seq2  TGCAAGTATCTGTTCTCTCCTTCCTCCATGTGGGGTCCCAGGG  693

seq1: chr4_134524369_134525517
seq2: B6Ng01-039P20.g_67_1193 (reverse)

seq1  AGGCCTGAGGTTAGGAGGAGACCATAAGGGAAGGCTGGGCAATGTTCTCT  50
      |||||| |||||||   |||||||||  |||| |||  |||||||||| |
seq2  AGGCCT-AGGTTAG--AGAGACCATA--GGAA-GCT--GCAATGTTCTTT  42

seq1  GTGCAATAGTTAGGAGGACACACCCTTGAGATGATCACGATGTGGACAGA  100
      | ||||||||      || ||| || |||||||||||||||||||||| |
seq2  G-GCAATAGT-----AGAGACAACCCTGAGATGATCACGATGTGGACA-A  85

seq1  CTAGCAATACCCATGGCTGACTGAGCTAGGATGCCAGAGTTCCCCACTGT  150
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  CTAGC-ATACCCAT-GCTGACTGAGCTAGGATGCCAGAGTTCCCCACTGT  133

seq1  CTCTGGGCTTGGGGAGGATCCCAGAACCAGTGTCCAAAAGCCCAGAGTTC  200
      |||||||| |||||||||| ||||||||||||||| ||||||||||||||
seq2  CTCTGGGC-TGGGGAGGAT-CCAGAACCAGTGTCC-AAAGCCCAGAGTTC  180

seq1  CCTTCCTGTCAGGGATGCTTTTGCCTCGTGTTCTTGTTCTGCATCGTCAG  250
      |||||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  CCTTCCTGTCAGGGATGC-TTTGCCTCGTGTTC-TGTTCTGCATCGTCAG  228

seq1  CGATCGATCCTGATAAGAGTCCAGGAGGGGTGTGCTGTGTACCGACGGGC  300
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CGATCGATCCTGATAAAAGTCCAGGAGGGGTGTGCTGTGTACCGACGGGC  278

seq1  GGTACTGCTCAGTGTCAGGTGGCAGCCGCGTGGGCTGCAGCGTCTGTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGCTCAGTGTCAGGTGGCAGCCGCGTGGGCTGCAGCGTCTGTACT  328

seq1  CAATCACCCTGCGCTGAGGGCTTCGCCCTGGTTCCCAATTACAATCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCACCCTGCGCTGAGGGCTTCGCCCTGGTTCCCAATTACAATCCTTC  378

seq1  AGGCGCGACACAAAATCATTGGACTGGTAAGAGGAGAGTACCTGGGTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGCGACACAAAATCATTGGACTGGTAAGAGGAGAGTACCTGGGTAAT  428

seq1  GCGTTTAACAAAAATTAACCGGGTTAAGGCCTGACTCCATTGAAACTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTTAACAAAAATTAACCGGGTTAAGGCCTGACTCCATTGAAACTGAG  478

seq1  AAAGTGCGGATGAACTGATCGATTCCTCCTTGGTCCAATTTACCCCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCGGATGAACTGATCGATTCCTCCTTGGTCCAATTTACCCCAGAG  528

seq1  CCGGCTTTGGGTTTCACTTAAATGGGCCAACCCCCAAAACAGGGATGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTTTGGGTTTCACTTAAATGGGCCAACCCCCAAAACAGGGATGCTG  578

seq1  GCTTTATCAAATTACCTCTTGGGTCATCGAGTCTGATTAAGGTGGAGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATCAAATTACCTCTTGGGTCATCGAGTCTGATTAAGGTGGAGTCT  628

seq1  CTGTGTCATCCACAGGAGCTGGTGGACAGGGACAGGCCGCCTGCCGTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCATCCACAGGAGCTGGTGGACAGGGACAGGCCGCCTGCCGTAGT  678

seq1  TCACAACTCTGCTGGGCTTGGGCTTCCTAGGTCCACACAGGCATCAACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACTCTGCTGGGCTTGGGCTTCCTAGGTCCACACAGGCATCAACAC  728

seq1  AGACCTGGTGGGCAGGGTGAGGAGAAGGGTTAGTACATATCTACTCCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGGTGGGCAGGGTGAGGAGAAGGGTTAGTACATATCTACTCCTCT  778

seq1  CCCTGGGGAGCTGAAGGTATGGATTTGATCAAATGCTCATTTATCCTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGGAGCTGAAGGTATGGATTTGATCAAATGCTCATTTATCCTTTG  828

seq1  CCCACCGCTGTCCTCCCCGCCCCGCCCCCTCGGGCCTCTTGGCAGATAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCGCTGTCCTCCCCGCCCCGCCCCCTCGGGCCTCTTGGCAGATAAA  878

seq1  TGATGTTATTTGAAGATATTCTGGAAATTTCTGACAGAGGCTGTGTCTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTATTTGAAGATATTCTGGAAATTTCTGACAGAGGCTGTGTCTTA  928

seq1  AGTGCTTTTAGAGCAGGCCTATACTTCGTAATGCTTGTCATGTTCTGGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTTAGAGCAGGCCTATACTTCGTAATGCTTGTCATGTTCTGGCT  978

seq1  AGTAGGCTCCTGGCCTCTAAAAGCCGGAACCTCACTCTGTTTCCTGCGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGCTCCTGGCCTCTAAAAGCCGGAACCTCACTCTGTTTCCTGCGTG  1028

seq1  CGAGGGCTAGGTCATTAGCTGTGAATTTCAAATGAAGCAGATTTACAATA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGGCTAGGTCATTAGCTGTGAATTTCAAATGAAGCAGATTTACAATA  1078

seq1  CAGATTGCAGAAATATGTCGAAGAGAGACAGCGGGTTCCCAAGGAATTC  1149
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGCAGAAATATGTCGAAGAGAGACAGCGGGTTCCCAAGGAATTC  1127