BAC Information

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BAC

Clone NameB6Ng01-040A18
Chromosome4 (Build37)
Map Location 66,910,921 - 66,911,722
singlet/doubletsinglet
Overlap genenone
Upstream geneAstn2, LOC667499, Tlr4
Downstream geneLOC100039379, Hmgb1-rs18, LOC433715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040A18.bB6Ng01-040A18.g
ACCDH867135DH867136
length8041,248
definitionDH867135|Mus musculus domesticus DNA, BAC clone: B6Ng01-040A18, 5' end.DH867136|Mus musculus domesticus DNA, BAC clone: B6Ng01-040A18, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttgtctacaaatatagcctttggaggagggggcagaagcatctt
tctcctaagcaataatcacagtaaaatctttgcacagtgacagtttgttt
gaggttggattaattcccatttgagaggggccaagaaggcaggaggcaga
gaagagaaggaaggaaggtggagagaggcagaacataattagagaaagtc
ccaggggattttgatatggaacttttgcaacagagcacagtcgacaaata
tctgaaaagaacctaggtcatagaaacagcagggacatttttcatactct
ggcttccttccaaggtttcagtattttcttccataaagaaatgaggtact
gggcctcaaccacagaatacttttatagcctataatcaattaatgcatgg
agaataaggaggtgagctggggtttaaacctctctcctgccacagtcaat
ctttgagactttgagtagtaccttgacaactctgagatgtcactatcaat
gaaaaaatggtatgatgattgtttctattgcccattggatttaaaatggg
ggagggagggagaataccagataaaaattcttggcataattgagctctta
gaactttttcccctactatacctttctatcattattttcaagatttcctt
tacatgcatgtaccacaaagtttggagctaagatgaaaggatgggttatc
cagagactatcccacctggggatccatccccataatagccaccaaaactc
agacactattgcatatgccagcaaaaatttgctgaaggaaccctgttata
gctg
gaattctcaattctgaatatctatgttccaaatacaaggacagccacatt
cattaaagaaactttagtaatactcaaagcacacattgaacctcacacaa
taacagtgggagacatcaacacaccactttcatcaggggacagatgatgg
aaacagaacctaagcagggacacagtgaaactaacagaagttatgaaaca
aatggatctaacagatatctacagaacattttatcctaaaacaaaagaat
ataacttcttcttagcacctcatggtaccttctccaaaattgaccatata
attggtcactaaacaggtctcaacagatacaaaaatattgaaattttcct
atggatcctatcagatcaccatggaataaggctgatcttcaatagcaaca
taaataatagaaagccaacatttacatggaaactgaacaacacccttctc
aatgattctttgatcaaggaatgaataaagaaagaaattaaggacttttt
agaatttaatgaaaatgaagccacaacatacccaaatatatggaacacag
tgaaagcatttctaagaggaaaaaatcatagccctgagtgtctacaaaaa
gaaactacagagagcacacacgagaagctagacaacacacctaaaagttc
tagaacaaaagaaagctaattcaccccagaggagtagacagcaggaaata
atcaaactcaggggctaaatcaaccaagtggaaaaaagaagaactattca
aagaatcaaccaaaggaggagctgtttttttgataaaatcaagaagatag
ataaacacttagccagacacactaaatgtcacagggtcaacatcctaatt
aacaaaatcagaaatgaaaagggagacataacaacagatcctgaagaata
taaacaccatcagattcttctacaaaaggctatactcacgaaaactggag
acctacatgaaatgaacaaatttctaacagataccagtaccaaattaaat
cagatcagttaagatctaaacagtgctaattcttctaagaatagaagatg
tcattaatagtctccccacccaaagaccatgacagatgggtttaatgcaa
gttctttcagacttcaagaagatctatttcagttcctccaaactatccca
aaatagagagcggaaggtatcttacccagctatccatggaccaatactct
gtatcctaaccagagatctaacggatgaacctcgaccattctccttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_66910921_66911722
seq2: B6Ng01-040A18.b_46_849

seq1  GAATTCTTGTCTACAAATATAGCCTTTGGAGGAGGGGGCAGAAGCATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTCTACAAATATAGCCTTTGGAGGAGGGGGCAGAAGCATCTT  50

seq1  TCTCCTAAGCAATAATCACAGTAAAATCTTTGCACAGTGACAGTTTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAAGCAATAATCACAGTAAAATCTTTGCACAGTGACAGTTTGTTT  100

seq1  GAGGTTGGATTAATTCCCATTTGAGAGGGGCCAAGAAGGCAGGAGGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTGGATTAATTCCCATTTGAGAGGGGCCAAGAAGGCAGGAGGCAGA  150

seq1  GAAGAGAAGGAAGGAAGGTGGAGAGAGGCAGAACATAATTAGAGAAAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAGGAAGGAAGGTGGAGAGAGGCAGAACATAATTAGAGAAAGTC  200

seq1  CCAGGGGATTTTGATATGGAACTTTTGCAACAGAGCACAGTCGACAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGATTTTGATATGGAACTTTTGCAACAGAGCACAGTCGACAAATA  250

seq1  TCTGAAAAGAACCTAGGTCATAGAAACAGCAGGGACATTTTTCATACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAAGAACCTAGGTCATAGAAACAGCAGGGACATTTTTCATACTCT  300

seq1  GGCTTCCTTCCAAGGTTTCAGTATTTTCTTCCATAAAGAAATGAGGTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCTTCCAAGGTTTCAGTATTTTCTTCCATAAAGAAATGAGGTACT  350

seq1  GGGCCTCAACCACAGAATACTTTTATAGCCTATAATCAATTAATGCATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCAACCACAGAATACTTTTATAGCCTATAATCAATTAATGCATGG  400

seq1  AGAATAAGGAGGTGAGCTGGGGTTTAAACCTCTCTCCTGCCACAGTCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAGGAGGTGAGCTGGGGTTTAAACCTCTCTCCTGCCACAGTCAAT  450

seq1  CTTTGAGACTTTGAGTAGTACCTTGACAACTCTGAGATGTCACTATCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGACTTTGAGTAGTACCTTGACAACTCTGAGATGTCACTATCAAT  500

seq1  GAAAAAATGGTATGATGATTGTTTCTATTGCCCATTGGATTTAAAATGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATGGTATGATGATTGTTTCTATTGCCCATTGGATTTAAAATGGG  550

seq1  GGAGGGAGGGAGAATACCAGATAAAAATTCTTGGCATAATTGAGCTCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGGGAGAATACCAGATAAAAATTCTTGGCATAATTGAGCTCTTA  600

seq1  GAACTTTTTCCCCTACTATACCTTTCTATCATTA-TTTCAAGATTTCCTT  649
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAACTTTTTCCCCTACTATACCTTTCTATCATTATTTTCAAGATTTCCTT  650

seq1  TACATGCATGTACCACAAAGTTTGGAGCTAAGATGAAAGGATGGGTTATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCATGTACCACAAAGTTTGGAGCTAAGATGAAAGGATGGGTTATC  700

seq1  CAGAGACTATCCCACCTGGGGATCCAT-CCCATAATCAGCCACC-AAACT  747
      ||||||||||||||||||||||||||| |||||||| ||||||| |||||
seq2  CAGAGACTATCCCACCTGGGGATCCATCCCCATAAT-AGCCACCAAAACT  749

seq1  CAGACACTATTGCATATGCCAGCAAGATTTTGCTGAAGGAACCCTGTTAT  797
      ||||||||||||||||||||||||| | ||||||||||||||||||||||
seq2  CAGACACTATTGCATATGCCAGCAAAAATTTGCTGAAGGAACCCTGTTAT  799

seq1  AGCTG  802
      |||||
seq2  AGCTG  804