BAC Information

Click to search

BAC

Clone NameB6Ng01-040A22
Chromosome4 (Build37)9 (Build37)
Map Location 15,619,447 - 15,619,62452,529,259 - 52,530,373
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1, Tmem64
Downstream geneLOC100040095, LOC633695, Calb1, Decr1, Nbn, Osgin2, Ripk2, LOC667150, LOC383994
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040A22.bB6Ng01-040A22.g
ACCDH867142DH867143
length5541,110
definitionDH867142|Mus musculus domesticus DNA, BAC clone: B6Ng01-040A22, 5' end.DH867143|Mus musculus domesticus DNA, BAC clone: B6Ng01-040A22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(15,619,447 - 15,619,624)(52,529,259 - 52,530,373)
sequence
attctcacacctgcgcacaatgcttgtttactagttaggcacagcgggag
ccagcgccatcttgtaatggcgattacttacgactctccacacctgtcca
ggggcagtgtcacccacagtgaataggaccttctcctgccaatcattaat
caggaaaatggatcacagatttgtccccagaccaatctgctggggccact
ttccaaattgggttccctctttcaaaatgactctagcttgtgtcaagtca
acacaaaactatccagctcagcctttttggacagaaaaaatatctttttt
taccttttgtgaatcctttcctgagcataatacttattcttgttagatat
ggctgtcagttattttaactcagcttattttaatggcattgatgaaattg
taactgtgaagaagataggtttacaacgttctctctctgtctctctgtct
gtctctgtctctctttctctgtctgtctgtctgtctgtctgtctctctct
ctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgt
gaattcatgagggtcccagttatggaaacacctttgatatagggatcaga
ggtggtctaacaagaattcctaatgagaagccagatagattgaagaatta
atgatctctttctcaaaatctgctgattgtttacaccctgatataataaa
agtcagatttattgccagtactgaaaagagtcactgatgccaggtctggt
ggcacaggcctttaatctcagcacttgggagacagaagctggaggaactc
tatctagagtttgaggccagtcagtttcaggacagccagaacaacagaga
aaaatcttctatggggggcggagggaggtttcagtgatgattaatagctg
ccacgtcactggaacttataaaatgcctttacatatattgtctagctgac
ttctactttaactcacaagacagataccttgttctagttttgtcttatgt
cactgtgataaaacacagaccaaagcaacttgggggaggaatgggtttaa
tttggcttataggtgacagtttattattgaaggaaattcaaattcctaga
caggaattcaaatcaggagcctagaggcaggaactgaagcataggcagtg
gaggagcactgcttagtggatctctgtggtttgctcagcttgctatctta
tacaattcaggaccacccacccaatggtaggatcagccacagtgaactgg
ggcctccaccccaatcattaatcaagaaatgacacacagtcatgtccatg
ggccagtctgatggaggtaattcctcaactgatgtttcttcttccaaggt
gactctagtttacatcaagttgacaacaattaagccacatagatttttat
ccagtgattaagtgtttgcaaacatcaacacctaacctaagttttctgat
gacaaactccctcttcttgttatatgtgcataggatctctaatcatcaaa
tctgtacttttcattgtcccagtgttttgaaggcatcaatttccttcctt
tgattttttgcacaactgcctggataaacttatgacatagagtcagatca
cattcaagtatgaaattgcacctatatctaccggagtttccttaattggt
aataaacatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_15619447_15619624
seq2: B6Ng01-040A22.b_488_607 (reverse)

seq1  AAACACACACACACACACACACACACACACACACGCACACATATAGGAGA  50
            |||||||||||||||||||||||||||| |||||       |||
seq2  ------ACACACACACACACACACACACACACACACACAC-------AGA  37

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGACAGAGACAGAGACA  100
      |||||||||||||||||||||||||| ||||  ||||||| | | |||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGACAGAC--AGACAGACAGACAGACA  85

seq1  GAGACAGAGAGACAGAGAGAGATAGAGAGAGACAGAGACAGAGAGAGACA  150
      |||| ||||||||||||| ||| ||||||| | ||               
seq2  GAGAAAGAGAGACAGAGACAGACAGAGAGACAGAG---------------  120

seq1  GAGACAATAGAGAGACAGAGAGACAGAG  178
                                  
seq2  ----------------------------  120

seq1: chr9_52529259_52530373
seq2: B6Ng01-040A22.g_67_1176

seq1  GAATTCATGAGGGTCCCAGTTATGGAAACACCTTTGATATAGGGATCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAGGGTCCCAGTTATGGAAACACCTTTGATATAGGGATCAGA  50

seq1  GGTGGTCTAACAAGAATTCCTAATGAGAAGCCAGATAGATTGAAGAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTCTAACAAGAATTCCTAATGAGAAGCCAGATAGATTGAAGAATTA  100

seq1  ATGATCTCTTTCTCAAAATCTGCTGATTGTTTACACCCTGATATAATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTCTTTCTCAAAATCTGCTGATTGTTTACACCCTGATATAATAAA  150

seq1  AGTCAGATTTATTGCCAGTACTGAAAAGAGTCACTGATGCCAGGTCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGATTTATTGCCAGTACTGAAAAGAGTCACTGATGCCAGGTCTGGT  200

seq1  GGCACAGGCCTTTAATCTCAGCACTTGGGAGACAGAAGCTGGAGGAACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGGCCTTTAATCTCAGCACTTGGGAGACAGAAGCTGGAGGAACTC  250

seq1  TATCTAGAGTTTGAGGCCAGTCAGTTTCAGGACAGCCAGAACAACAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAGAGTTTGAGGCCAGTCAGTTTCAGGACAGCCAGAACAACAGAGA  300

seq1  AAAATCTTCTATGGGGGGCGGAGGGAGGTTTCAGTGATGATTAATAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTCTATGGGGGGCGGAGGGAGGTTTCAGTGATGATTAATAGCTG  350

seq1  CCACGTCACTGGAACTTATAAAATGCCTTTACATATATTGTCTAGCTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTCACTGGAACTTATAAAATGCCTTTACATATATTGTCTAGCTGAC  400

seq1  TTCTACTTTAACTCACAAGACAGATACCTTGTTCTAGTTTTGTCTTATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTTTAACTCACAAGACAGATACCTTGTTCTAGTTTTGTCTTATGT  450

seq1  CACTGTGATAAAACACAGACCAAAGCAACTTGGGGGAGGAATGGGTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGATAAAACACAGACCAAAGCAACTTGGGGGAGGAATGGGTTTAA  500

seq1  TTTGGCTTATAGGTGACAGTTTATTATTGAAGGAAATTCAAATTCCTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTTATAGGTGACAGTTTATTATTGAAGGAAATTCAAATTCCTAGA  550

seq1  CAGGAATTCAAATCAGGAGCCTAGAGGCAGGAACTGAAGCATAGGCAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATTCAAATCAGGAGCCTAGAGGCAGGAACTGAAGCATAGGCAGTG  600

seq1  GAGGAGCACTGCTTAGTGGATCTCTGTGGTTTGCTCAGCTTGCTATCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCACTGCTTAGTGGATCTCTGTGGTTTGCTCAGCTTGCTATCTTA  650

seq1  TACAATTCAGGACCACCCACCCAATGGTAGGATCAGCCACAGTGAACTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTCAGGACCACCCACCCAATGGTAGGATCAGCCACAGTGAACTGG  700

seq1  GGCCTCCACCCCAATCATTAATCAAGAAATGACACACAGTCATGTCCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCACCCCAATCATTAATCAAGAAATGACACACAGTCATGTCCATG  750

seq1  GGCCAGTCTGATGGAGGTAATTCCTCAACTGATGTTTCTTCTTCCAAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGTCTGATGGAGGTAATTCCTCAACTGATGTTTCTTCTTCCAAGGT  800

seq1  GACTCTAGTTTACATCAAGTTGACAACAATTAAGCCACATAGATTTTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTAGTTTACATCAAGTTGACAACAATTAAGCCACATAGATTTTTAT  850

seq1  CCAGTGATTAAGTGTTTGCAAACATCAAACACCTAACCTAAGTTTTCTGA  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCAGTGATTAAGTGTTTGCAAACATC-AACACCTAACCTAAGTTTTCTGA  899

seq1  TGACAAACTCCCTCTTCTTGTTATATGTGCATAGGATCTCTAATCATCAA  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGACAAACTCCCTCTTCTTGTTATATGTGCATAGGATCTCTAATCATC-A  948

seq1  AATCTGTACTTTTCCATTGTCCCAGTGTTTTGAAGGCATCAATTTTCCTT  1000
      ||||||||||||| |||||||||||||||||||||||||||| |||||||
seq2  AATCTGTACTTTT-CATTGTCCCAGTGTTTTGAAGGCATCAA-TTTCCTT  996

seq1  CCTTTGATTTTCTGCACAACTGCCT-GATAAAC-TATGAACATAGAGTCA  1048
      ||||||||||| ||||||||||||| ||||||| |||| |||||||||||
seq2  CCTTTGATTTTTTGCACAACTGCCTGGATAAACTTATG-ACATAGAGTCA  1045

seq1  GATTCACATCAAAATAATGAATTGCACTTATATCTACTGAAGTTTCTCTT  1098
      || ||||||  || ||   |||||||| ||||||||| | ||||||  | 
seq2  GA-TCACATTCAAGTATGAAATTGCACCTATATCTACCGGAGTTTCCTTA  1094

seq1  ATTGTTAATAAAACATT  1115
      |||| |||| |||||||
seq2  ATTGGTAAT-AAACATT  1110