BAC Information

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BAC

Clone NameB6Ng01-040I02
Chromosome4 (Build37)
Map Location 129,278,943 - 129,417,587
singlet/doubletdoublet
Overlap gene2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1
Upstream geneTlr12, Phc2, A3galt2, BC039093, LOC667354, Trim62, Adc, Ak2, Ibrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2
Downstream geneLOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2, Col16a1, Pef1, Hcrtr1, Tinagl, Gm853, Serinc2, Fabp3, Zcchc17, Wdr57, 2610200G18Rik, Pum1, LOC622577, Sdc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040I02.bB6Ng01-040I02.g
ACCDH867448DH867449
length719818
definitionDH867448|Mus musculus domesticus DNA, BAC clone: B6Ng01-040I02, 5' end.DH867449|Mus musculus domesticus DNA, BAC clone: B6Ng01-040I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,416,869 - 129,417,587)(129,278,943 - 129,279,758)
sequence
gaattctcccccctctcctttggagagcaatgctccagagcccccagatc
tcctctgatagcgtccagtacacagagcattgcactctggccagaacgat
atcgtggacagttcattgtgaaagagcactatctaatggagagacaaatc
agcctttaagagcactgtctgctcttccacaggggttcagttcccagcac
ccacatcagaaggctttcagacacctgtaacttcagtactgggggatcct
gtttttgttttctttggtggtttttttttttttttttttttttttttggt
ttctctgtatagccctggctgtcctggaactcactttgtaaaccaggctg
gcctcgaactcaaaaatccgcctgcctctgcctcccaagtgctgggatta
aaggcgtgcaccaccacgcccggctgttttctttgtttttttttgttgtt
gttgttttttcgagacagggtttctctgtatagacctggctgtcctggaa
ctcattttgttgaccaggctggcctctgcctcccaagtgctgtgattaaa
ggcatgcaccaccaccaccggcctgatgttatcttatgtcctacacaggt
actcaaaatacaaagctgaaaagaaataaaaggaatataccattttccct
tcatctgctctctgtttcccagcattgttgaaggggaattaccgtttgta
taatgcaaaaaggtcacgg
gaattctgtacatttgagatgaagctggaggacatggagtgggctactta
gaaggggtaacactgtcactcaaggccttataccagcagggacgatggga
actggccatgacgagggagagggcatttaaggcaatagagtacattgaat
gcgtttctctgtttgctctaaggggtcttcaaacacatgagcggtccctg
agcatttgtaaccatgccaacccccgtgggaaggtgcaagccagaacagg
gactctcgaactgggtaacaactggcaaggggtctgacaccagatatcct
gcatatcagatacttacgtgacagtccataactgtagtaaaattacagtt
gtgaagtggcaatgaaaataattttatggttggggggtccccacaacatg
aggaactggattaaagggtcgcagcattaggaaggttgagaactgggaaa
gccgttgcacacgcaggcagcccctgacaggtctctcctctttctagtac
ctgatgccctttctcctcaatcagagtggatcccttctctactacttgac
tttggcatcaacaggtgggtctctggctcgggtcttctctggggtggacg
ccatattttacgaagggaacctgaaagaccttgcacctgtcaatgaggca
gagcaccggttttctggtccttctgtgggtcacagggccagtgaggcgag
tcagtgtgcagcggcggcggcagcaggaggctcattgtggtctcctaagt
ggtgatgtcctttatcatctgggaggaggggggttttcctgatacgtttg
ctgtgtgtttgatgttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_129416869_129417587
seq2: B6Ng01-040I02.b_44_762 (reverse)

seq1  CCGTGACCTTTTTGCATTATACAAACGGTAAATCCCCTTCAACAATGCTG  50
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCGTGACCTTTTTGCATTATACAAACGGTAATTCCCCTTCAACAATGCTG  50

seq1  GGAAACAGAGAGCAGATGAAGGGAAAATGGTATATTCCTTTTATTTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAGAGAGCAGATGAAGGGAAAATGGTATATTCCTTTTATTTCTTT  100

seq1  TCAGCTTTGTATTTTGAGTACCTGTGTAGGACATAAGATAACATCAGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTTGTATTTTGAGTACCTGTGTAGGACATAAGATAACATCAGGCC  150

seq1  GGTGGTGGTGGTGCATGCCTTTAATCACAGCACTTGGGAGGCAGAGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGGTGGTGCATGCCTTTAATCACAGCACTTGGGAGGCAGAGGCCA  200

seq1  GCCTGGTCAACAAAATGAGTTCCAGGACAGCCAGGTCTATACAGAGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCAACAAAATGAGTTCCAGGACAGCCAGGTCTATACAGAGAAAC  250

seq1  CCTGTCTCGAAAAAACAACAACAACAAAAAAAAACAAAGAAAACAGCCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCGAAAAAACAACAACAACAAAAAAAAACAAAGAAAACAGCCGG  300

seq1  GCGTGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGC  350

seq1  GGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACA  400
      |||||| ||||||||||||||||||||| |||||||||||||||||||||
seq2  GGATTTTTGAGTTCGAGGCCAGCCTGGTTTACAAAGTGAGTTCCAGGACA  400

seq1  GCCAGGGCTATACAGAGAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGCTATACAGAGAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAC  450

seq1  CACCAAAGAAAACAAAAACAGGATCCCCCAGTACTGAAGTTACAGGTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAAGAAAACAAAAACAGGATCCCCCAGTACTGAAGTTACAGGTGTC  500

seq1  TGAAAGCCTTCTGATGTGGGTGCTGGGAACTGAACCCCTGTGGAAGAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCCTTCTGATGTGGGTGCTGGGAACTGAACCCCTGTGGAAGAGCA  550

seq1  GACAGTGCTCTTAAAGGCTGATTTGTCTCTCCATTAGATAGTGCTCTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGCTCTTAAAGGCTGATTTGTCTCTCCATTAGATAGTGCTCTTTC  600

seq1  ACAATGAACTGTCCACGATATCGTTCTGGCCAGAGTGCAATGCTCTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAACTGTCCACGATATCGTTCTGGCCAGAGTGCAATGCTCTGTGT  650

seq1  ACTGGACGCTATCAGAGGAGATCTGGGGGCTCTGGAGCATTGCTCTCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACGCTATCAGAGGAGATCTGGGGGCTCTGGAGCATTGCTCTCCAA  700

seq1  AGGAGAGGGGGGAGAATTC  719
      |||||||||||||||||||
seq2  AGGAGAGGGGGGAGAATTC  719

seq1: chr4_129278943_129279758
seq2: B6Ng01-040I02.g_68_885

seq1  GAATTCTGTACA-GAGAGATGAAGCTGGAGGACATGGAGTGGGCTACTTA  49
      ||||||||||||   |||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTACATTTGAGATGAAGCTGGAGGACATGGAGTGGGCTACTTA  50

seq1  GAAGGGGTAACACTGTCACTCAAGGCCTTATACCAGCAGGGACGATGGGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGTAACACTGTCACTCAAGGCCTTATACCAGCAGGGACGATGGGA  100

seq1  ACTGGCCATGACGAGGGAGAGGGCATTTAAGGCAATAGAGTACATTGAAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCATGACGAGGGAGAGGGCATTTAAGGCAATAGAGTACATTGAAT  150

seq1  GCGTTTCTCTGTTTGCTCTAAGGGGTCTTCAAACACATGAGCGGTCCCTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTTCTCTGTTTGCTCTAAGGGGTCTTCAAACACATGAGCGGTCCCTG  200

seq1  AGCATTTGTAACCATGCCAACCCCCGTGGGAAGGTGCAAGCCAGAACAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTGTAACCATGCCAACCCCCGTGGGAAGGTGCAAGCCAGAACAGG  250

seq1  GACTCTCGAACTGGGTAACAACTGGCAAGGGGTCTGACACCAGATATCCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCGAACTGGGTAACAACTGGCAAGGGGTCTGACACCAGATATCCT  300

seq1  GCATATCAGATACTTACGTGACAGTCCATAACTGTAGTAAAATTACAGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATCAGATACTTACGTGACAGTCCATAACTGTAGTAAAATTACAGTT  350

seq1  GTGAAGTGGCAATGAAAATAATTTTATGGTTGGGGGGTCCCCACAACATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTGGCAATGAAAATAATTTTATGGTTGGGGGGTCCCCACAACATG  400

seq1  AGGAACTGGATTAAAGGGTCGCAGCATTAGGAAGGTTGAGAACTGGGAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTGGATTAAAGGGTCGCAGCATTAGGAAGGTTGAGAACTGGGAAA  450

seq1  GCCGTTGCACACGCAGGCAGCCCCTGACAGGTCTCTCCTCTTTCTAGTAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTTGCACACGCAGGCAGCCCCTGACAGGTCTCTCCTCTTTCTAGTAC  500

seq1  CTGATGCCCTTTCTCCTCAATCAGAGTGGATCCCTTCTCTACTACTTGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCCCTTTCTCCTCAATCAGAGTGGATCCCTTCTCTACTACTTGAC  550

seq1  TTTGGCATCAACAGGTGGGTCTCTGGCTCGGGTCTTCTCTGGGGTGGACG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCATCAACAGGTGGGTCTCTGGCTCGGGTCTTCTCTGGGGTGGACG  600

seq1  CCATATTTTACGAAGGGAACCTGAAAGACCTTGCACCTGTCAATGAGGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTTACGAAGGGAACCTGAAAGACCTTGCACCTGTCAATGAGGCA  650

seq1  GAGCACCGG-TTTCTGGTCCTTCTGTGGGTCACAGGGCCAGTGAGGCGAG  698
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACCGGTTTTCTGGTCCTTCTGTGGGTCACAGGGCCAGTGAGGCGAG  700

seq1  TCAGTGTGCAGCGGCGGCGGCAGCAGGAGGCTCATTGTGGTCTCCTAAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTGCAGCGGCGGCGGCAGCAGGAGGCTCATTGTGGTCTCCTAAGT  750

seq1  GGTGATGTCCTTTATCATCTGGGAGGA-GGGGGTTTTCCTGATACGTTTG  797
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGTGATGTCCTTTATCATCTGGGAGGAGGGGGGTTTTCCTGATACGTTTG  800

seq1  CTGTGTGTTTGATGGTTGT  816
      ||||||||||||| |||||
seq2  CTGTGTGTTTGAT-GTTGT  818