BAC Information

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BAC

Clone NameB6Ng01-040J13
Chromosome4 (Build37)
Map Location 146,707,090 - 146,708,191
singlet/doubletsinglet
Overlap geneLOC666581
Upstream geneLOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574
Downstream geneEG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040J13.bB6Ng01-040J13.g
ACCDH867511DH867512
length1,1941,083
definitionDH867511|Mus musculus domesticus DNA, BAC clone: B6Ng01-040J13, 5' end.DH867512|Mus musculus domesticus DNA, BAC clone: B6Ng01-040J13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcataccttcgatatatttgaaaagttcctcttctgtaagtattct
ctagtgaattttaagatgctgtatcttggtaaagaattgtctcattcact
tcatttataaagattctctactgtatgaaataactgatgatttctcagac
tgacattgtgagtattgtatttgtcacatacaaactatttgtaaggttcc
tctcctgtatgaattctctgataaatactaagatgggatttgtgattaaa
acatttgtcaccttcactacatttgaaagtttctctcctgtatgaatttt
ctgatgccttctcagactgcctttgtcagtaaaacatttttcacattcac
tacacttgtaaggtttctctcctgtatgaattctctgatgaatactaagt
tggaatttttgggtaaagcatttgtcacattcactacatttgtaaggttt
ctctcctgtatgaattttctgatgccttctcaaattgcctttttcagtaa
agcatttgtcacattcactgcatttgtaaggtttctctcctgtatgaatt
ctctgatgaatactaatttcgagttttcgggtaaagcattttttacattc
actacatttataaggtttctctcctttatgaattctcggatgaatattaa
gataagatttttggggaaagcacttatcacattcatgacatttgtaaggt
ttctctcctgaaatgaattttctgatgaattctcagattgcctttttcag
taaagcatttgtcacattcactgcatttgtaaggtttctctcctttatga
attttctgatgccttctcagactgcctttgtcagtaaagcatttctcaca
ttcactacatttgtaaggtttctctcttgtatgaattttctgatgccttc
tcagattgcccttttcagtaaagcatttgtcacattcactgcatttttag
gtttctctcctgtgagaatcctctgatggatactaggataggattttcgg
gtaagcaattctcccatcgcatctgtaagatgtctcctctatgaatcttc
ggatgaaacaaaaaaggatattgggaaagcactgtcacatactagcacat
tgtaaggttctctctcgaagaaattctgatgaattccatggcttcgtaaa
catgtccatcccgcttgagtgctcttggattcgagctgctgagc
gaattcatacaggaaagaaaccttacaaatagattgtatgtgacaaatac
aatactcacaatgtcagtcttagaaatcatcagttatttcatacagtaga
gaatctttataaatgaagtaaatgaggcaattctttaccaagatatatta
tctcaaaattcattagagaatacttagagaagacaaacttttcaaatata
ttgtaggtatgaatcctttccttttggcctatttcctagactgtaacagt
gaatacttacaggctagaaacttaactcatgcattgtatgaagaaatatc
tttgacttcatttcaggtcagagagaacatctaagaactttttagggtaa
agtatttctgttggggaaaatggtgtattcttgacaacacttgaggctcc
acactagagaattagtatgattatgaaaatcttgtgaaaatattcatgca
atgttcaaatcttaggtaatgtcaactatttatgctgtgagaaactctga
aaatgtgaaatgtagaaagcttttcatgacacctttttacttgttcatcc
tcaaacgttaccagatgaagacaagttgggaagtcagaagatagtatttt
ataacactttaatcgagaaagaaataatccatttcaaaaggaaactattt
aaggtctttaatacaaccctcaaaataggtaataaaactggtagcatttt
gtatatttttattgtcctgtaactaactccaataaaactgaaagattcaa
caaatttgctttggttgtttccaatttgcagttgggatactcagatgaat
atatgttgcatcttcccaggaaatgcctcacataaacatagactgaagtc
atgaacatttttgcaaacctgtatcataaagttaatagtggtgattttta
actggtggataacaatacctttgggatgtaacgaccctgtcacatggtgc
tacagcataggaaacacatattccaattgtcttaaattagaatcattcat
tgaagtgtagggtagtttgcccaccctaaatatttgaattcaatgtcagt
tttagcataaaagtaaaattctgttacatatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146707090_146708191
seq2: B6Ng01-040J13.g_69_1151

seq1  GAATTCATACAGGAAAGAAACCTTACAAATAGATTGTATGTGACAAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACAGGAAAGAAACCTTACAAATAGATTGTATGTGACAAATAC  50

seq1  AATACTCACAATGTCAGTCTTAGAAATCATCAGTTATTTCATACAGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCACAATGTCAGTCTTAGAAATCATCAGTTATTTCATACAGTAGA  100

seq1  GAATCTTTATAAATGAAGTAAATGAGGCAATTCTTTACCAAGATATATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTTATAAATGAAGTAAATGAGGCAATTCTTTACCAAGATATATTA  150

seq1  TCTCAAAATTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAATTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAATATA  200

seq1  TTGTAGGTATGAATCCTTTCCTTTTGGCCTATTTCCTAGACTGTAACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGTATGAATCCTTTCCTTTTGGCCTATTTCCTAGACTGTAACAGT  250

seq1  GAATACTTACAGGCTAGAAACTTAACTCATGCATTGTATGAAGAAATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTTACAGGCTAGAAACTTAACTCATGCATTGTATGAAGAAATATC  300

seq1  TTTGACTTCATTTCAGGTCAGAGAGAACATCTAAGAACTTTTTAGGGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTTCATTTCAGGTCAGAGAGAACATCTAAGAACTTTTTAGGGTAA  350

seq1  AGTATTTCTGTTGGGGAAAATGGTGTATTCTTGACAACACTTGAGGCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTCTGTTGGGGAAAATGGTGTATTCTTGACAACACTTGAGGCTCC  400

seq1  ACACTAGAGAATTAGTATGATTATGAAAATCTTGTGAAAATATTCATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGAGAATTAGTATGATTATGAAAATCTTGTGAAAATATTCATGCA  450

seq1  ATGTTCAAATCTTAGGTAATGTCAACTATTTATGCTGTGAGAAACTCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAAATCTTAGGTAATGTCAACTATTTATGCTGTGAGAAACTCTGA  500

seq1  AAATGTGAAATGTAGAAAGCTTTTCATGACACCTTTTTACTTGTTCATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGAAATGTAGAAAGCTTTTCATGACACCTTTTTACTTGTTCATCC  550

seq1  TCAAACGTTACCAGATGAAGACAAGTTGGGAAGTCAGAAGATAGTATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACGTTACCAGATGAAGACAAGTTGGGAAGTCAGAAGATAGTATTTT  600

seq1  ATAACACTTTAATCGAGAAAGAAATAATCCATTTCAAAAGGAAACTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACTTTAATCGAGAAAGAAATAATCCATTTCAAAAGGAAACTATTT  650

seq1  AAGGTCTTTAATACAACCCTCAAAATAGGTAATAAAACTGGTAGCATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTTTAATACAACCCTCAAAATAGGTAATAAAACTGGTAGCATTTT  700

seq1  GTATATTTTTATTGTCCTGTAACTAACTCCAATAAAACTGAAAGATTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTTTTATTGTCCTGTAACTAACTCCAATAAAACTGAAAGATTCAA  750

seq1  CAAATTTGCTTTGGTTGTTTCCAATTTGCAGTTGGGATACTCAGATGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTGCTTTGGTTGTTTCCAATTTGCAGTTGGGATACTCAGATGAAT  800

seq1  ATATGTTGCATCTTCCCAGGAAATGCCTCACATAAAACATAGACTGAAGT  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATATGTTGCATCTTCCCAGGAAATGCCTCACAT-AAACATAGACTGAAGT  849

seq1  CATGAACATTTTTGCAAACCTGTATCATAAAGTTAATAGTGGTGATTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACATTTTTGCAAACCTGTATCATAAAGTTAATAGTGGTGATTTTT  899

seq1  AACTGGTGGATAACAATACCTTTGGGATGTAACGACCCTGTCACAGTGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||| 
seq2  AACTGGTGGATAACAATACCTTTGGGATGTAACGACCCTGTCACA-TGG-  947

seq1  TGCTTAACAGCATAGGAAAACACATATTTCCAATTGTCTTAAAATTAAGA  1000
      ||||  |||||||||| ||||||||| ||||||||||||| ||||||   
seq2  TGCT--ACAGCATAGG-AAACACATA-TTCCAATTGTCTT-AAATTA--G  990

seq1  AATCATTCATTGAAGTGTAGGGTAGTCTGCCCACCCTAAAATAATTTGAA  1050
      |||||||||||||||||||||||||| |||||||||||||   |||||||
seq2  AATCATTCATTGAAGTGTAGGGTAGTTTGCCCACCCTAAA--TATTTGAA  1038

seq1  TTCAATGTCAGTATTTAGCATTAAAAAGTTAAAAATACTGTTTTACATAT  1100
      |||||||||||| ||||||||  ||||||  ||||| |||  ||||||||
seq2  TTCAATGTCAGT-TTTAGCAT--AAAAGT--AAAATTCTG--TTACATAT  1081

seq1  GG  1102
      ||
seq2  GG  1083