BAC Information

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BAC

Clone NameB6Ng01-040M08
Chromosome4 (Build37)
Map Location 151,122,991 - 151,256,648
singlet/doubletdoublet
Overlap geneCamta1, LOC100041960
Upstream geneLOC677027, Errfi1, Park7, Tnfrsf9, Uts2, Per3, Vamp3
Downstream geneDnajc11, Thap3, Phf13, Klhl21, Zbtb48, Tas1r1, Nol9, EG666980, Plekhg5, Tnfrsf25, Espn, LOC100043284, Hes2, Acot7, Gpr153, Hes3, Icmt, Rnf207, Rpl22, Chd5, Kcnab2, LOC100042028, Nphp4, LOC667039, Gm833
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040M08.bB6Ng01-040M08.g
ACCDH867635DH867636
length437900
definitionDH867635|Mus musculus domesticus DNA, BAC clone: B6Ng01-040M08, 5' end.DH867636|Mus musculus domesticus DNA, BAC clone: B6Ng01-040M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,122,991 - 151,123,433)(151,255,753 - 151,256,648)
sequence
ttctaagtcttacttggcaaaattgaaagtccttcaccctgagtgccatc
catctgcacaaaggacgcactgccgtgtaaagcatcacccatggggagag
gttcactgacagtgagaccaaggctaaatgacaagagaggaaaggtgtct
tccacagccacgaggaagcctggttccaagggcagggaggaggaaacaga
gaaactgggtctcctctcaacagggggccacaatttgaggaatgacttgg
aaagcaaatcttgggaagtgtgtatgtgtatgggggggtctttcaccaga
gaggctgagagcagaggactttgagggaggagaacaagaaggtgcaaagg
tcccaaggggaaagtggacaagcacagactgtagaaggccaatgccgcaa
gccctggtgagggccgcctatggaaggggaggtgtgg
gaattctccccctggctttagcattgactccacttccctgggacaagccg
cttctctttcccatgttggtttctagctctggatggtggcaggcgacctg
tctccttgggcctctaagaagacatttgttctgtccggtctgactcagcc
cttgcggctcacaggggactcaggagaggcaatctgactgccacattgga
tgggtgagccagcagcctgggggacgaaaagaggagtgtgcactggcgag
tcccgaagtgtcccagtaaacatgcaacatggttgttactctctgtcaca
gtcagtgccaggctttcccgcatggcaaaccgtcaggtagactggctttt
agcaggctcccccacattctggttacaaagaaccaccagagatccgttaa
ggtacgccacgccaaaataacagttggtttgatctcagtcccgcagacac
tgaagaaaagccagccttttatttgactgtagtgtttagacaacaacact
tggcgtctttgtggcgtctcctcctgcacagaacttcacgtgaagggaga
gctttcccaatgttgctgtttaaccattagaaaccctgttgttgtttggc
tgtgcgatgctttgccaaggcaacgggacccgtgcggtgcgcgtagccag
tttgatgattgggaggaggagcttggctgcgactccctgcttgagtgcac
gcagtgaagatcccggttggcttttgtcaacttgacacaagcctaaacac
atctgtggagagagaaaccttaattgagaaaatgccatataagattgacc
tgtaggcaagcctgtggggcaggttcttggctaatggattggttatgagg
ggtccgcccactgtgggcggagccactatctggggcagcaaactatggga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_151122991_151123433
seq2: B6Ng01-040M08.b_44_486

seq1  GAATTCTTCTAAGTCTTACTTGGCAAAATTGAAAGTCCTTCACCCTGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTAAGTCTTACTTGGCAAAATTGAAAGTCCTTCACCCTGAGT  50

seq1  GCCATCCATCTGCACAAAGGACGCACTGCCGTGTAAAGCATCACCCATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCATCTGCACAAAGGACGCACTGCCGTGTAAAGCATCACCCATGG  100

seq1  GGAGAGGTTCACTGACAGTGAGACCAAGGCTAAATGACAAGAGAGGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGTTCACTGACAGTGAGACCAAGGCTAAATGACAAGAGAGGAAAG  150

seq1  GTGTCTTCCACAGCCACGAGGAAGCCTGGTTCCAAGGGCAGGGAGGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTCCACAGCCACGAGGAAGCCTGGTTCCAAGGGCAGGGAGGAGGA  200

seq1  AACAGAGAAACTGGGTCTCCTCTCAACAGGGGGCCACAATTTGAGGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGAAACTGGGTCTCCTCTCAACAGGGGGCCACAATTTGAGGAATG  250

seq1  ACTTGGAAAGCAAATCTTGGGAAGTGTGTATGTGTATGGGGGGGTCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAAAGCAAATCTTGGGAAGTGTGTATGTGTATGGGGGGGTCTTTC  300

seq1  ACCAGAGAGGCTGAGAGCAGAGGACTTTGAGGGAGGAGAACAAGAAGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGAGGCTGAGAGCAGAGGACTTTGAGGGAGGAGAACAAGAAGGTG  350

seq1  CAAAGGTCCCAAGGGGAAAGTGGACAAGCACAGACTGTAGAAGGCCAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTCCCAAGGGGAAAGTGGACAAGCACAGACTGTAGAAGGCCAATG  400

seq1  CCGCAAGCCCTGGTGAGGGCCGCCTATGGAAGGGGAGGTGTGG  443
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAAGCCCTGGTGAGGGCCGCCTATGGAAGGGGAGGTGTGG  443

seq1: chr4_151255753_151256648
seq2: B6Ng01-040M08.g_70_969 (reverse)

seq1  TCCCATGGTTTGCTG-CCCAG-TAGTGGCTCCGCCCACAGTGGGCGGAAC  48
      |||||| |||||||| ||||| ||||||||||||||||||||||||| ||
seq2  TCCCATAGTTTGCTGCCCCAGATAGTGGCTCCGCCCACAGTGGGCGG-AC  49

seq1  CCCTCATAACCAAT-CATTAGCCAAGACCCTGCCCCACAGGCTTGCCTAC  97
      |||||||||||||| |||||||||||| ||||||||||||||||||||||
seq2  CCCTCATAACCAATCCATTAGCCAAGAACCTGCCCCACAGGCTTGCCTAC  99

seq1  AGGTCAATCTTATATGGCATTTTCTCAATTAAGG-TTCTCTCTCCACAGA  146
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGGTCAATCTTATATGGCATTTTCTCAATTAAGGTTTCTCTCTCCACAGA  149

seq1  TGTGTCTAGGCTTGTGTCAAGTTGACAAAAGCCAACCGGGATCTTCACTG  196
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTAGGCTTGTGTCAAGTTGACAAAAGCCAACCGGGATCTTCACTG  199

seq1  CGTGCACTCAAGCAGGGAGTCGCAGCCAAGCTCCTCCTCCCAATCATCAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCACTCAAGCAGGGAGTCGCAGCCAAGCTCCTCCTCCCAATCATCAA  249

seq1  ACTGGCTACGCGCACCGCACGGGTCCCGTTGCCTTGGC-AAGCATCGCAC  295
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACTGGCTACGCGCACCGCACGGGTCCCGTTGCCTTGGCAAAGCATCGCAC  299

seq1  AGCCAAACAACAACAGGGTTTCTAATGGTTAAACAGCAACATTGGGAAAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAACAACAACAGGGTTTCTAATGGTTAAACAGCAACATTGGGAAAG  349

seq1  CTCTCCCTTCACGTGAAGTTCTGTGCAGGAGGAGACGCCACAAAGACGCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTTCACGTGAAGTTCTGTGCAGGAGGAGACGCCACAAAGACGCC  399

seq1  AAGTGTTGTTGTCTAAACACTACAGTCAAATAAAAGGCTGGCTTTTCTTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTGTTGTCTAAACACTACAGTCAAATAAAAGGCTGGCTTTTCTTC  449

seq1  AGTGTCTGCGGGACTGAGATCAAACCAACTGTTATTTTGGCGTGGCGTAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTGCGGGACTGAGATCAAACCAACTGTTATTTTGGCGTGGCGTAC  499

seq1  CTTAACGGATCTCTGGTGGTTCTTTGTAACCAGAATGTGGGGGAGCCTGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACGGATCTCTGGTGGTTCTTTGTAACCAGAATGTGGGGGAGCCTGC  549

seq1  TAAAAGCCAGTCTACCTGACGGTTTGCCATGCGGGAAAGCCTGGCACTGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCCAGTCTACCTGACGGTTTGCCATGCGGGAAAGCCTGGCACTGA  599

seq1  CTGTGACAGAGAGTAACAACCATGTTGCATGTTTACTGGGACACTTCGGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACAGAGAGTAACAACCATGTTGCATGTTTACTGGGACACTTCGGG  649

seq1  ACTCGCCAGTGCACACTCCTCTTTTCGTCCCCCAGGCTGCTGGCTCACCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGCCAGTGCACACTCCTCTTTTCGTCCCCCAGGCTGCTGGCTCACCC  699

seq1  ATCCAATGTGGCAGTCAGATTGCCTCTCCTGAGTCCCCTGTGAGCCGCAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATGTGGCAGTCAGATTGCCTCTCCTGAGTCCCCTGTGAGCCGCAA  749

seq1  GGGCTGAGTCAGACCGGACAGAACAAATGTCTTCTTAGAGGCCCAAGGAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAGTCAGACCGGACAGAACAAATGTCTTCTTAGAGGCCCAAGGAG  799

seq1  ACAGGTCGCCTGCCACCATCCAGAGCTAGAAACCAACATGGGAAAGAGAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCGCCTGCCACCATCCAGAGCTAGAAACCAACATGGGAAAGAGAA  849

seq1  GCGGCTTGTCCCAGGGAAGTGGAGTCAATGCTAAAGCCAGGGGGAGAATT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCTTGTCCCAGGGAAGTGGAGTCAATGCTAAAGCCAGGGGGAGAATT  899

seq1  C  896
      |
seq2  C  900