BAC Information

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BAC

Clone NameB6Ng01-040N18
Chromosome4 (Build37)
Map Location 127,421,849 - 127,528,749
singlet/doubletdoublet
Overlap genenone
Upstream geneNcdn, AU040320, Sfpq, Zmym1, LOC665245, Zmym6, LOC100039968, LOC621588, Dlgap3, BC003266, Gja4, Gjb3, Gjb4, Gjb5, LOC667296
Downstream geneLOC635169, 4930465A12Rik, Hmgb4, 4930546G22Rik, Zscan20, Tlr12, Phc2, A3galt2, BC039093
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040N18.bB6Ng01-040N18.g
ACCDH867697DH867698
length1,127967
definitionDH867697|Mus musculus domesticus DNA, BAC clone: B6Ng01-040N18, 5' end.DH867698|Mus musculus domesticus DNA, BAC clone: B6Ng01-040N18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,421,849 - 127,422,992)(127,527,782 - 127,528,749)
sequence
gaattcatcactgcacagtcagacatgccagttcggagcatacaaggctg
gacaaagcacgcgacgtccccccttgaagggaacatcatacattgctgga
tgtaaatattcaaaaaccacgtaaatatataaactaacaagtcaataggc
aaattaaaaggttcttggtgctcagtagaagctggctgataaggtgggtg
tggcaagagccaggttccaccctgggtgacagtgaggtggagaggtcact
tccctgtcctgtatgtgacttccatatttcccttagggtcacgccaacta
caaagacgacctccttagcaagccttccttgaagtgccaagccactgtca
cctgctcagagcagattcccaatcatgactggacaactttcccctaggct
gcaagacccctgcaagagttaggtgttgcatcctgtagtcggatgcaaag
ggtccaagttgtgccagactcccccactgttgctcactggacagattcac
ctgaatttcctaaggaagccttgtctccaagctcatttcttttattctgt
cctacacgtcctacggtccctgcctgaatcagccacacattagcatttgt
atctttaagtgccaccaagtgtgcttgtgctgggcacaaaggccaagagg
atgatgagtggaagctgaatcctaattgggtcatctatcagagaaagggg
tcccttctccagctcccagcctcacactctgagctgcatttgctcagcaa
tgcattattcatttacatcaacattccctctgcttgctgcagttcccatc
tctgcttacagtgggaacgtcccagcgcacccttgtgccctaagtcatcc
agtgagctctccctctacctatgccttctgcatccttcacagtggtgact
tttcttacgttgtccaagcacctgacagcattgacttaaaggaggaagga
ttgatactggctctcagttcgagggcacacagtccaccatagtaacagat
gactcatgtgcaggagtgtgaacctggattctcacaccgggtcttgtgaa
taggagcagagatataataggggtgagcgatctgtggctcagaacacttt
aggaactcacttcctcagtaagactac
gaattctcagagggagagcacaggagcttgtcataggatggacagaacat
ttggaagcttttgagcagcagatattctttagtagggtgtgtttggacca
gcagtccatctgaaaaagctaagctgctttttgtctccttcctttccttt
gattataaaaatggcttaaatattaaaaattagtaatagccatctgcaca
tctttcttcgatttatgatttttttgtcctgcccatgtttttttttttct
attggttcattcgtcattttcttattgatttgcaaaatgcttttgacgta
ttaagcaaaactagcctcagctgcatgggctgcagatgtttttgtccaga
ttggttgccttttacatttatttacagaaatcttaaacgttcagaagttt
tctttctttctttctttctttctttctctctctctctctctctctctctc
tctctctctctctctttctttctttctttctttcctcgactgaatcaagt
cattactgttccagcctggtatctttgtcatgcttagaaaagctgtcttc
acaccacagtcattaaaaaaaattctcccatgttttatttccagtactta
tacggctttattttttatgatgcaatccttgctccatctggaatttgctt
tgctgtgttcctgctgattttgacaaacaccatgaccaaaagctacttga
ggagggaagggtgcatctcagcttacaactgtagtccatagtcaggtcaa
gtcaggaacccaaggcaggagttgaatcagaggccacggaggaactctgc
ctactgccttcctcagtctgctttctcatacaccccagaaccccattgcc
aagcagcgacactgcccacaatgggtggggccctccccatcatcattaat
aactaaacaacctaagactcatctataggctatctgatggaggcattcta
tcagttgaggcttcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_127421849_127422992
seq2: B6Ng01-040N18.b_45_1171

seq1  GAATTCATCACTGCACAGTCAGACATGCCAGTTCGGAGCATACAAGGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACTGCACAGTCAGACATGCCAGTTCGGAGCATACAAGGCTG  50

seq1  GACAAAGCACGCGACGTCCCCCCTTGAAGGGAACATCATACATTGCTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGCACGCGACGTCCCCCCTTGAAGGGAACATCATACATTGCTGGA  100

seq1  TGTAAATATTCAAAAACCACGTAAATATATAAACTAACAAGTCAATAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATATTCAAAAACCACGTAAATATATAAACTAACAAGTCAATAGGC  150

seq1  AAATTAAAAGGTTCTTGGTGCTCAGTAGAAGCTGGCTGATAAGGTGGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAAGGTTCTTGGTGCTCAGTAGAAGCTGGCTGATAAGGTGGGTG  200

seq1  TGGCAAGAGCCAGGTTCCACCCTGGGTGACAGTGAGGTGGAGAGGTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGAGCCAGGTTCCACCCTGGGTGACAGTGAGGTGGAGAGGTCACT  250

seq1  TCCCTGTCCTGTATGTGACTTCCATATTTCCCTTAGGGTCACGCCAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTCCTGTATGTGACTTCCATATTTCCCTTAGGGTCACGCCAACTA  300

seq1  CAAAGACGACCTCCTTAGCAAGCCTTCCTTGAAGTGCCAAGCCACTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACGACCTCCTTAGCAAGCCTTCCTTGAAGTGCCAAGCCACTGTCA  350

seq1  CCTGCTCAGAGCAGATTCCCAATCATGACTGGACAACTTTCCCCTAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCAGAGCAGATTCCCAATCATGACTGGACAACTTTCCCCTAGGCT  400

seq1  GCAAGACCCCTGCAAGAGTTAGGTGTTGCATCCTGTAGTCGGATGCAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGACCCCTGCAAGAGTTAGGTGTTGCATCCTGTAGTCGGATGCAAAG  450

seq1  GGTCCAAGTTGTGCCAGACTCCCCCACTGTTGCTCACTGGACAGATTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAAGTTGTGCCAGACTCCCCCACTGTTGCTCACTGGACAGATTCAC  500

seq1  CTGAATTTCCTAAGGAAGCCTTGTCTCCAAGCTCATTTCTTTTATTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTTCCTAAGGAAGCCTTGTCTCCAAGCTCATTTCTTTTATTCTGT  550

seq1  CCTACACGTCCTACGGTCCCTGCCTGAATCAGCCACACATTAGCATTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACGTCCTACGGTCCCTGCCTGAATCAGCCACACATTAGCATTTGT  600

seq1  ATCTTTAAGTGCCACCAAGTGTGCTTGTGCTGGGCACAAAGGCCAAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAAGTGCCACCAAGTGTGCTTGTGCTGGGCACAAAGGCCAAGAGG  650

seq1  ATGATGAGTGGAAGCTGAATCCTAATTGGGTCATCTATCAGAGAAAGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAGTGGAAGCTGAATCCTAATTGGGTCATCTATCAGAGAAAGGGG  700

seq1  TCCCTTCTCCAGCTCCCAGCCTCACACTCTGAGCTGCATTTGCTCAGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTCCAGCTCCCAGCCTCACACTCTGAGCTGCATTTGCTCAGCAA  750

seq1  TGCATTATTCATTTACATCAACATTCCCTCTGCTTGCTGCAGTTCCCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTATTCATTTACATCAACATTCCCTCTGCTTGCTGCAGTTCCCATC  800

seq1  TCTGCTTACAGTGGGAACGTCCCAGCGCACCCTTGTGCCCTAAGTCATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTACAGTGGGAACGTCCCAGCGCACCCTTGTGCCCTAAGTCATCC  850

seq1  AGTGAGCTCTCCCTCTACCTATGCCTTCTGCATCCTTCACAGTGGTGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCTCTCCCTCTACCTATGCCTTCTGCATCCTTCACAGTGGTGACT  900

seq1  TTTCTTACGTTGTCCAAGCACCTGACAAGCATTGACTTAAAGGAGGAAGG  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTCTTACGTTGTCCAAGCACCTGAC-AGCATTGACTTAAAGGAGGAAGG  949

seq1  ATTGATACTGGCTCTCAGTTCGAGGGCACACAGTCCACCATAGTAACAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATACTGGCTCTCAGTTCGAGGGCACACAGTCCACCATAGTAACAGA  999

seq1  TGACTCCATGGTGCAAGGAGTGTGGAACCTGGAATTCTTCACACCGTGTC  1050
      ||||| ||| |||| |||||||| |||||||| |||| |||||||| |||
seq2  TGACT-CAT-GTGC-AGGAGTGT-GAACCTGG-ATTC-TCACACCGGGTC  1043

seq1  TTGTTGGAATAAGGAGCAGAGAGTAT-ATAGGGGTGAGGCAGATCTGTGG  1099
      ||||  |||| ||||||||||| ||| |||||||||||   ||||||| |
seq2  TTGT--GAAT-AGGAGCAGAGA-TATAATAGGGGTGAG--CGATCTGT-G  1086

seq1  GCTCAGGGACCACCTTTAGTGACTCACTTCCTCCAGTAAGACTAC  1144
      |||||  || || ||||||  ||||||||||| ||||||||||||
seq2  GCTCA--GAACA-CTTTAGGAACTCACTTCCT-CAGTAAGACTAC  1127

seq1: chr4_127527782_127528749
seq2: B6Ng01-040N18.g_69_1035 (reverse)

seq1  AAAGAAGCCTCAACTGATAGAATGCCTCCATCAGATAGCCTATAGATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGCCTCAACTGATAGAATGCCTCCATCAGATAGCCTATAGATGAG  50

seq1  TCTGTAGGTTGTTTAGTTAATTAATGATTGATGGGGAGGGCCCCACCCAT  100
      ||| |||||||||||||| |||||||| ||||||||||||||||||||||
seq2  TCT-TAGGTTGTTTAGTT-ATTAATGA-TGATGGGGAGGGCCCCACCCAT  97

seq1  TGTGGGCAGTGTCGCTGCTTGGC-ATGGGGTTCTGGGGTGTATGAGAAAG  149
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGTGGGCAGTGTCGCTGCTTGGCAATGGGGTTCTGGGGTGTATGAGAAAG  147

seq1  CAGACTGAGGAAGGCAGTAGGCAGAGTTCCTCCGTGGCCTCTGATTCAAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGAGGAAGGCAGTAGGCAGAGTTCCTCCGTGGCCTCTGATTCAAC  197

seq1  TCCTGCCTTGGGTTCCTGACTTGACCTGACTATGGACTACAGTTGTAAGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTTGGGTTCCTGACTTGACCTGACTATGGACTACAGTTGTAAGC  247

seq1  TGAGATGCACCCTTCCCTCCTCAAGTAGCTTTTGGTCATGGTGTTTGTC-  298
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGAGATGCACCCTTCCCTCCTCAAGTAGCTTTTGGTCATGGTGTTTGTCA  297

seq1  AAATCAGCAGGAACACAGCAAAGCAAATTCCAGATGGAGCAAGGATTGCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGCAGGAACACAGCAAAGCAAATTCCAGATGGAGCAAGGATTGCA  347

seq1  TCATAAAAAATAAAGCCGTATAAGTACTGGAAATAAAACATGGGAGAATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAAAATAAAGCCGTATAAGTACTGGAAATAAAACATGGGAGAATT  397

seq1  TTTTTTAATGACTGTGGTGTGAAGACAGCTTTTCTAAGCATGACAAAGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAATGACTGTGGTGTGAAGACAGCTTTTCTAAGCATGACAAAGAT  447

seq1  ACCAGGCTGGAACAGTAATGACTTGATTCAGTCGAGGAAAGAAAGAAAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTGGAACAGTAATGACTTGATTCAGTCGAGGAAAGAAAGAAAGA  497

seq1  AAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGA  547

seq1  AAGAAAGAAAGAAAGAAAGAAAACTTCTGAACGTTTAAGATTTCTGTAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAACTTCTGAACGTTTAAGATTTCTGTAAA  597

seq1  TAAATGTAAAAGGCAACCAATCTGGACAAAAACATCTGCAGCCCATGCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTAAAAGGCAACCAATCTGGACAAAAACATCTGCAGCCCATGCAG  647

seq1  CTGAGGCTAGTTTTGCTTAATACGTCAAAAGCATTTTGCAAATCAATAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCTAGTTTTGCTTAATACGTCAAAAGCATTTTGCAAATCAATAAG  697

seq1  AAAATGACGAATGAACCAATAGAAAAAAAAAAACATGGGCAGGACAAAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGACGAATGAACCAATAGAAAAAAAAAAACATGGGCAGGACAAAAA  747

seq1  AATCATAAATCGAAGAAAGATGTGCAGATGGCTATTACTAATTTTTAATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAAATCGAAGAAAGATGTGCAGATGGCTATTACTAATTTTTAATA  797

seq1  TTTAAGCCATTTTTATAATCAAAGGAAAGGAAGGAGACAAAAAGCAGCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCCATTTTTATAATCAAAGGAAAGGAAGGAGACAAAAAGCAGCTT  847

seq1  AGCTTTTTCAGATGGACTGCTGGTCCAAACACACCCTACTAAAGAATATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTTCAGATGGACTGCTGGTCCAAACACACCCTACTAAAGAATATC  897

seq1  TGCTGCTCAAAAGCTTCCAAATGTTCTGTCCATCCTATGACAAGCTCCTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTCAAAAGCTTCCAAATGTTCTGTCCATCCTATGACAAGCTCCTG  947

seq1  TGCTCTCCCTCTGAGAATTC  968
      ||||||||||||||||||||
seq2  TGCTCTCCCTCTGAGAATTC  967