BAC Information

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BAC

Clone NameB6Ng01-040N24
Chromosome4 (Build37)
Map Location 65,419,447 - 65,455,036
singlet/doubletdoublet
Overlap geneAstn2
Upstream genePappa, Trim32
Downstream geneLOC667499
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040N24.bB6Ng01-040N24.g
ACCDH867709DH867710
length1,0421,085
definitionDH867709|Mus musculus domesticus DNA, BAC clone: B6Ng01-040N24, 5' end.DH867710|Mus musculus domesticus DNA, BAC clone: B6Ng01-040N24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,453,977 - 65,455,036)(65,419,447 - 65,420,538)
sequence
gaattctagaagctcacggtgcttttgatagtaaaacacaacctgtctta
gttccacggacacagtgcatacaggggaagtcagtaagatggaaatagta
cccagtgtatattctttggtatggtttagatgatgttgcagttgagactc
aaagttggtaataggcttttttttttttttttaaattggttttagaaatg
gcttttggaaagcatgcctctgttggtattaagaaaattatgcagacggc
taaagcagggggttggtttaaaagaaggaaatgttttctttcatgggatt
ccagtatctgtcataaaatagggatacaggagaagttaagtaatgatacc
tgctacctatgaaaatgcattccaaaatcgatgatttttttttttttttg
gtaaggattgcatcagctagttgtttgatttttaaatttctgagctacaa
ttataggtggggttgtatctcatgaacttgaagttttatcaagtaaatgt
gtgtgcacgtatgcataggtgtgtgaatgtgttgaagtggggggcagttt
aaacatatgcttcagaagcaatggtattgccagacaggctcagcccggca
ttcaggtctcttcatttggctcctttccgaccgctccatgcacatcattc
accacttgacttccgcctacactagagccaaatggacctgattagatgca
attctttgaacatgcggcttgtttagggcttcttgcccttcaattagagt
caatttctctgtcaacccttagagccaataagtggacaggctttcagatc
tttgtcctttctgaagacatcccttctcccacccaggaagtgatagagat
cttcctattttctatacctaactttcttacatcacctggaatatttatag
cgcagactgctggcactagtttgtctcaccaataagcggattgacacccc
aggaattgtgattaactcatacacagcatatcatcatagaaaggagcata
agggtcgaggcatgaagggatcctactctggactaatttctc
gaattcaattatctctaggcattttcttagagctcagaagaggagccctg
ggaagcaggctgcatgagagtgggacctgatattgaaaggaggatgagtg
catgctgcaaggagccatcctcagagggtgcacctctgctcagtgctact
cagtaagcaggtgagagagatggaatatagcgcgggtcagctgagaccca
tacattcagctcccattctgcctcatttcctgggaggacccttaaggaga
ttcaggacaagggtccctgagttttaattcatctccattctggaggaagg
caacagagggtgtctggaaatttcccagctgttcgaccacaggctggtcc
tatccaaatcatcctgccccagctgcttcttctattccctgtgcctgccc
tggatgttttctagtcgaatttttcatcatcaccaagccatttgtttctg
tttgtaattatgcattttaatgttcattaattatggaatgcaaattgctc
agagtgcaaaatttgtaatgagttgttctaccaccctacccccatgtcta
gaaggtgggccagctgttctcagcagaaatgaaaacaaccaacgtacaag
acaatacaacaaaataccttcttctgaggcctgagtatattgtaaggtac
actataaagctgaggggtttcctggtggcacacaaaaaaggggctttgtc
tctcttggaccatggaagaccttggtctatcactttatcttttttatttt
ctatagggacctagcttcttacagctcttgtgtcctgaactggttgcctg
acttctctgacctgagatctttttagataggggacaagtgaatcatatcc
ccagaagccaggggaaaaattctcttagaaactggagtttcatctgaccc
caccttgggcttctaactggtcagtggctttggcagagcagaaaagattt
gttttcttcattataaaatgagacactggacaggtggaagtggagagctg
ttcagtgctcatattttgtagagttttgtacaaaggaagagatcatcttg
aaagcatttgagaagactgactgaatcagagactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_65453977_65455036
seq2: B6Ng01-040N24.b_43_1084 (reverse)

seq1  GAGAACTTAGTCCAGAGTAGGGACTCCTATCATTGCCTCTGACCCCTTAT  50
      ||||| |||||||||||||||   |||  ||| |||||| || |||||||
seq2  GAGAAATTAGTCCAGAGTAGG--ATCCCTTCA-TGCCTC-GA-CCCTTAT  45

seq1  GCTTCCTATTCTATGATAGATATTGCTGGTGTACTGAGTTAAATCAACAG  100
      || |||| ||||||||| |||| |||| ||||| |||||||    | || 
seq2  GC-TCCT-TTCTATGAT-GATA-TGCT-GTGTA-TGAGTTA----ATCAC  85

seq1  ATTTCCTGGGGTGTCACTCCGCTTATTGGTTGAGACAAACCTAGTGCCAG  150
      | |||||||||||||| |||||||||||| ||||||||| ||||||||||
seq2  AATTCCTGGGGTGTCAATCCGCTTATTGG-TGAGACAAA-CTAGTGCCAG  133

seq1  CAGTCTGCGCTATAAAATATTCCAGGTGATGTAAGAAAGTTAGGTATAGA  200
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGCGCTAT-AAATATTCCAGGTGATGTAAGAAAGTTAGGTATAGA  182

seq1  AAATAGGAAGATCTCTATCACTTCCTGGGTGGGAGAAGGGATGTCTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGAAGATCTCTATCACTTCCTGGGTGGGAGAAGGGATGTCTTCAG  232

seq1  AAAGGACAAAGATCTGAAAGCCTGTCCACTTATTGGCTCTAAGGGTTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACAAAGATCTGAAAGCCTGTCCACTTATTGGCTCTAAGGGTTGAC  282

seq1  AGAGAAATTGACTCTAATTGAAGGGCAAGAAGCCCTAAACAAGCCGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATTGACTCTAATTGAAGGGCAAGAAGCCCTAAACAAGCCGCATG  332

seq1  TTCAAAGAATTGCATCTAATCAGGTCCATTTGGCTCTAGTGTAGGCGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGAATTGCATCTAATCAGGTCCATTTGGCTCTAGTGTAGGCGGAA  382

seq1  GTCAAGTGGTGAATGATGTGCATGGAGCGGTCGGAAAGGAGCCAAATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGTGGTGAATGATGTGCATGGAGCGGTCGGAAAGGAGCCAAATGAA  432

seq1  GAGACCTGAATGCCGGGCTGAGCCTGTCTGGCAATACCATTGCTTCTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTGAATGCCGGGCTGAGCCTGTCTGGCAATACCATTGCTTCTGAA  482

seq1  GCATATGTTTAAACTGCCCCCCACTTCAACACATTCACACACCTATGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGTTTAAACTGCCCCCCACTTCAACACATTCACACACCTATGCAT  532

seq1  ACGTGCACACACATTTACTTGATAAAACTTCAAGTTCATGAGATACAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGCACACACATTTACTTGATAAAACTTCAAGTTCATGAGATACAACC  582

seq1  CCACCTATAATTGTAGCTCAGAAATTTAAAAATCAAACAACTAGCTGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTATAATTGTAGCTCAGAAATTTAAAAATCAAACAACTAGCTGATG  632

seq1  CAATCCTTACCAAAAAAAAAAAAAAATCATCGATTTTGGAATGCATTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTTACCAAAAAAAAAAAAAAATCATCGATTTTGGAATGCATTTTC  682

seq1  ATAGGTAGCAGGTATCATTACTTAACTTCTCCTGTATCCCTATTTTATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTAGCAGGTATCATTACTTAACTTCTCCTGTATCCCTATTTTATGA  732

seq1  CAGATACTGGAATCCCATGAAAGAAAACATTTCCTTCTTTTAAACCAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACTGGAATCCCATGAAAGAAAACATTTCCTTCTTTTAAACCAACC  782

seq1  CCCTGCTTTAGCCGTCTGCATAATTTTCTTAATACCAACAGAGGCATGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTTTAGCCGTCTGCATAATTTTCTTAATACCAACAGAGGCATGCT  832

seq1  TTCCAAAAGCCATTTCTAAAACCAATTTAAAAAAAAAAAAAAAAGCCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAAGCCATTTCTAAAACCAATTTAAAAAAAAAAAAAAAAGCCTAT  882

seq1  TACCAACTTTGAGTCTCAACTGCAACATCATCTAAACCATACCAAAGAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACTTTGAGTCTCAACTGCAACATCATCTAAACCATACCAAAGAAT  932

seq1  ATACACTGGGTACTATTTCCATCTTACTGACTTCCCCTGTATGCACTGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTGGGTACTATTTCCATCTTACTGACTTCCCCTGTATGCACTGTG  982

seq1  TCCGTGGAACTAAGACAGGTTGTGTTTTACTATCAAAAGCACCGTGAGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGGAACTAAGACAGGTTGTGTTTTACTATCAAAAGCACCGTGAGCT  1032

seq1  TCTAGAATTC  1060
      ||||||||||
seq2  TCTAGAATTC  1042

seq1: chr4_65419447_65420538
seq2: B6Ng01-040N24.g_68_1152

seq1  GAATTCAATTATCTCTAGGCATTTTCTTAGAGCTCAGAAGAGGAGCCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTATCTCTAGGCATTTTCTTAGAGCTCAGAAGAGGAGCCCTG  50

seq1  GGAAGCAGGCTGCATGAGAGTGGGACCTGATATTGAAAGGAGGATGAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGGCTGCATGAGAGTGGGACCTGATATTGAAAGGAGGATGAGTG  100

seq1  CATGCTGCAAGGAGCCATCCTCAGAGGGTGCACCTCTGCTCAGTGCTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGCAAGGAGCCATCCTCAGAGGGTGCACCTCTGCTCAGTGCTACT  150

seq1  CAGTAAGCAGGTGAGAGAGATGGAATATAGCGCGGGTCAGCTGAGACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGCAGGTGAGAGAGATGGAATATAGCGCGGGTCAGCTGAGACCCA  200

seq1  TACATTCAGCTCCCATTCTGCCTCATTTCCTGGGAGGACCCTTAAGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCAGCTCCCATTCTGCCTCATTTCCTGGGAGGACCCTTAAGGAGA  250

seq1  TTCAGGACAAGGGTCCCTGAGTTTTAATTCATCTCCATTCTGGAGGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGACAAGGGTCCCTGAGTTTTAATTCATCTCCATTCTGGAGGAAGG  300

seq1  CAACAGAGGGTGTCTGGAAATTTCCCAGCTGTTCGACCACAGGCTGGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAGGGTGTCTGGAAATTTCCCAGCTGTTCGACCACAGGCTGGTCC  350

seq1  TATCCAAATCATCCTGCCCCAGCTGCTTCTTCTATTCCCTGTGCCTGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAAATCATCCTGCCCCAGCTGCTTCTTCTATTCCCTGTGCCTGCCC  400

seq1  TGGATGTTTTCTAGTCGAATTTTTCATCATCACCAAGCCATTTGTTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTTTTCTAGTCGAATTTTTCATCATCACCAAGCCATTTGTTTCTG  450

seq1  TTTGTAATTATGCATTTTAATGTTCATTAATTATGGAATGCAAATTGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAATTATGCATTTTAATGTTCATTAATTATGGAATGCAAATTGCTC  500

seq1  AGAGTGCAAAATTTGTAATGAGTTGTTCTACCACCCTACCCCCATGTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCAAAATTTGTAATGAGTTGTTCTACCACCCTACCCCCATGTCTA  550

seq1  GAAGGTGGGCCAGCTGTTCTCAGCAGAAATGAAAACAACCAACGTACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGGGCCAGCTGTTCTCAGCAGAAATGAAAACAACCAACGTACAAG  600

seq1  ACAATACAACAAAATACCTTCTTCTGAGGCCTGAGTATATTGTAAGGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACAACAAAATACCTTCTTCTGAGGCCTGAGTATATTGTAAGGTAC  650

seq1  ACTATAAAGCTGAGGGGTTTCCTGGTGGCACACAAAAAAGGGGCTTTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAAAGCTGAGGGGTTTCCTGGTGGCACACAAAAAAGGGGCTTTGTC  700

seq1  TCTCTTGGACCATGGAAGACCTTGGTCTATCACTTTATCTTTTTTATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGGACCATGGAAGACCTTGGTCTATCACTTTATCTTTTTTATTTT  750

seq1  CTATAGGGACCTAGCTTCTTACAGCTCTTGTGTCCTGAACTGGTTGCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGGGACCTAGCTTCTTACAGCTCTTGTGTCCTGAACTGGTTGCCTG  800

seq1  ACTTCTCTGACCTGAGATCTTTTTAGATAGGGGACAAGTGAATCATATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCTGACCTGAGATCTTTTTAGATAGGGGACAAGTGAATCATATCC  850

seq1  CCAGAAGCCAGGGGAAAAATTCTCTTAGAAACTGGAGTTTCATCTGACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGCCAGGGGAAAAATTCTCTTAGAAACTGGAGTTTCATCTGACCC  900

seq1  CACCTT-GGCTTCTAACTGGTCAGGTGGCTTTGGCAGAGCAGAAAAGATT  949
      |||||| |||||||||||||||| ||||||||||||||||||||||||||
seq2  CACCTTGGGCTTCTAACTGGTCA-GTGGCTTTGGCAGAGCAGAAAAGATT  949

seq1  TGTTTTCTCCATTATAAAATGAAGACACTGGACAGGTGGAAGTTGGAGAA  999
      |||||||| |||||||||||| |||||||||||||||||||| ||||| |
seq2  TGTTTTCTTCATTATAAAATG-AGACACTGGACAGGTGGAAG-TGGAG-A  996

seq1  GCTGTTCAGTGCTCATATTTTGTCAGAGTTTTGTACAAAGGAGAGA-ACC  1048
      ||||||||||||||||||||||| |||||||||||||||||| ||| | |
seq2  GCTGTTCAGTGCTCATATTTTGT-AGAGTTTTGTACAAAGGA-AGAGATC  1044

seq1  ATCTTGAAAGCATTTGAGAGGAACTGACTGAACATCAGAGACTT  1092
      ||||||||||||||||||| | |||||||||  |||||||||||
seq2  ATCTTGAAAGCATTTGAGAAG-ACTGACTGA--ATCAGAGACTT  1085