BAC Information

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BAC

Clone NameB6Ng01-041B20
Chromosome4 (Build37)
Map Location 136,037,317 - 136,177,925
singlet/doubletdoublet
Overlap geneLuzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik
Upstream geneNpal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540
Downstream geneBC029684, Ephb2, C1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2, Usp48
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041B20.bB6Ng01-041B20.g
ACCDH867871DH867872
length964343
definitionDH867871|Mus musculus domesticus DNA, BAC clone: B6Ng01-041B20, 5' end.DH867872|Mus musculus domesticus DNA, BAC clone: B6Ng01-041B20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,037,317 - 136,038,284)(136,177,583 - 136,177,925)
sequence
gaattctctctgtagaccaggctagcctcaaactcagagatccacttttc
tttgccttctgagtgctgggattaaagctatatactttgcctgggtatat
gtaaagccatacacaaagctcccattcccaatttaaaatataattcagct
ttaatttttttttgacaaggtctcatatctgaagctgcccttgaactcac
gatcttcctgccttagccttctaagttctgagattacagatgtataccat
tatgcctgacattttaaaattttatttccctctcattttttgccttcaaa
agttttattacaatattttaattatccaatttcctattaatctccttatg
tgcctaatttataagttaagctgtatcatagatttgtatagcacaacaca
tagtatatccaagtttcttacctcagctttcaggtatcccttagggtctt
gggatgaatatcctgtatgtaaggaagggctgttgtactttctttgaatt
tgttttcagagcatgttgtacatttcctaaacctgataaatcttcatttt
taagaggtttatgtttaacctttggcagttaggcaagtctgtcgagtgaa
gtgagtgattaattgtttttggtctcaaatgagaagccatgtaattctaa
aaggtgaagagaagaatggggtttctttatgtgtgaggcttgcctttgag
aatcctacaagtggtgtttcaaaggttttgagtcttgattatatgaaaag
aagagagtcttgtttcctaaaatgattcctttgaaaaacatccttgtttt
ggatttcttttaaattattgcttaaatataacttgttagacttgtattac
gattgaatttggaattctcttgatgaactgttagcttgtattaatatgtg
tgattttattggttaccttaaaaaataatatgggccggcgtggtggcgca
cgcctttaatccca
aggtcatcaggcgtggtggcaagcacctctacctactgagccatcttaca
ggctgtctgtgtctttgatctgcacaggaactgcaggaagaagaatctag
cttgtcacactttccatccatccaaaggagctgatattcaaagttcccag
gaagagcaagggctaagattggaacacaggacacaggtccccctcccctg
gtccccaaagccttccttatatctccatctgactgactatgaggtcgtcg
gggggtgggggggtggcatgtcaaagctaggactgatgatctgagtcaga
ttgtttactgcaagggcctgcaagacttcccttaggggaccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_136037317_136038284
seq2: B6Ng01-041B20.b_43_1006

seq1  GAATTCTCTCTGTAGACCAGGCTAGCCTCAAACTCAGAGATCCACTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTGTAGACCAGGCTAGCCTCAAACTCAGAGATCCACTTTTC  50

seq1  TTTGCCTTCTGAGTGCTGGGATTAAAGCTATATACTTTGCCTGGGTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTTCTGAGTGCTGGGATTAAAGCTATATACTTTGCCTGGGTATAT  100

seq1  GTAAAGCCATACACAAAGCTCCCATTCCCAATTTAAAATATAATTCAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGCCATACACAAAGCTCCCATTCCCAATTTAAAATATAATTCAGCT  150

seq1  TTAATTTTTTTTTGACAAGGTCTCATATCTGAAGCTGCCCTTGAACTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTTTTTGACAAGGTCTCATATCTGAAGCTGCCCTTGAACTCAC  200

seq1  GATCTTCCTGCCTTAGCCTTCTAAGTTCTGAGATTACAGATGTATACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCCTGCCTTAGCCTTCTAAGTTCTGAGATTACAGATGTATACCAT  250

seq1  TATGCCTGACATTTTAAAATTTTATTTCCCTCTCATTTTTTGCCTTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTGACATTTTAAAATTTTATTTCCCTCTCATTTTTTGCCTTCAAA  300

seq1  AGTTTTATTACAATATTTTAATTATCCAATTTCCTATTAATCTCCTTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATTACAATATTTTAATTATCCAATTTCCTATTAATCTCCTTATG  350

seq1  TGCCTAATTTATAAGTTAAGCTGTATCATAGATTTGTATAGCACAACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAATTTATAAGTTAAGCTGTATCATAGATTTGTATAGCACAACACA  400

seq1  TAGTATATCCAAGTTTCTTACCTCAGCTTTCAGGTATCCCTTAGGGTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATATCCAAGTTTCTTACCTCAGCTTTCAGGTATCCCTTAGGGTCTT  450

seq1  GGGATGAATATCCTGTATGTAAGGAAGGGCTGTTGTACTTTCTTTGAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGAATATCCTGTATGTAAGGAAGGGCTGTTGTACTTTCTTTGAATT  500

seq1  TGTTTTCAGAGCATGTTGTACATTTCCTAAACCTGATAAATCTTCATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAGAGCATGTTGTACATTTCCTAAACCTGATAAATCTTCATTTT  550

seq1  TAAGAGGTTTATGTTTAACCTTTGGCAGTTAGGCAAGTCTGTCGAGTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGTTTATGTTTAACCTTTGGCAGTTAGGCAAGTCTGTCGAGTGAA  600

seq1  GTGAGTGATTAATTGTTTTTGGTCTCAAATGAGAAGCCATGTAATTCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGATTAATTGTTTTTGGTCTCAAATGAGAAGCCATGTAATTCTAA  650

seq1  AAGGTGAAGAGAAGAATGGGGTTTCTTTATGTGTGAGGCTTGCCTTTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAAGAGAAGAATGGGGTTTCTTTATGTGTGAGGCTTGCCTTTGAG  700

seq1  AATCCTACAAGTGGTGTTTCAAAGGTTTTGAGTCTTGATTATATGAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTACAAGTGGTGTTTCAAAGGTTTTGAGTCTTGATTATATGAAAAG  750

seq1  AAGAGAGTCTTGTTTCCTAAAATGATTCCTTTGAAAAACATCCTTGTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGTCTTGTTTCCTAAAATGATTCCTTTGAAAAACATCCTTGTTTT  800

seq1  GGATTTCTTTTAAAATTATTGCTTAAATATAACTTGTTAGACTTGTATTA  850
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCTTTT-AAATTATTGCTTAAATATAACTTGTTAGACTTGTATTA  849

seq1  CGATTGAATTTGGAATTCTCTTGATGAACTGTTAGCTTGTATTAATATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTGAATTTGGAATTCTCTTGATGAACTGTTAGCTTGTATTAATATGT  899

seq1  GTGATTTTTATTTGTTACCTTAAAAAAATAATAATGGCCCGGCGTGGTGG  950
      |||| ||||||| |||||||| |||||||||| |||| ||||||||||||
seq2  GTGA-TTTTATTGGTTACCTT-AAAAAATAAT-ATGGGCCGGCGTGGTGG  946

seq1  CGCACGCCTTTAATCCCA  968
      ||||||||||||||||||
seq2  CGCACGCCTTTAATCCCA  964

seq1: chr4_136177583_136177925
seq2: B6Ng01-041B20.g_76_418 (reverse)

seq1  TGGGTCCCCTAAGGGAAGTCTTGCAGGCCCTTGCAGTAAACTATCTGACT  50
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGGGTCCCCTAAGGGAAGTCTTGCAGGCCCTTGCAGTAAACAATCTGACT  50

seq1  CAGATCATCAGTCCTAGCTTTGACATGCCACCCCCCCACCCCCCGACGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCATCAGTCCTAGCTTTGACATGCCACCCCCCCACCCCCCGACGAC  100

seq1  CTCATAGTCAGTCAGATGGAGATATAAGGAAGGCTTTGGGGACCAGGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGTCAGTCAGATGGAGATATAAGGAAGGCTTTGGGGACCAGGGGA  150

seq1  GGGGGACCTGTGTCCTGTGTTCCAATCTTAGCCCTTGCTCTTCCTGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGACCTGTGTCCTGTGTTCCAATCTTAGCCCTTGCTCTTCCTGGGAA  200

seq1  CTTTGAATATCAGCTCCTTTGGATGGATGGAAAGTGTGACAAGCTAGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAATATCAGCTCCTTTGGATGGATGGAAAGTGTGACAAGCTAGATT  250

seq1  CTTCTTCCTGCAGTTCCTGTGCAGATCAAAGACACAGACAGCCTGTAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCCTGCAGTTCCTGTGCAGATCAAAGACACAGACAGCCTGTAAGA  300

seq1  TGGCTCAGTAGGTAGAGGTGCTTGCCACCACGCCTGATGACCT  343
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGTAGGTAGAGGTGCTTGCCACCACGCCTGATGACCT  343