BAC Information

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BAC

Clone NameB6Ng01-041D21
Chromosome4 (Build37)
Map Location 131,601,765 - 131,763,138
singlet/doubletdoublet
Overlap geneEpb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2
Upstream geneGm831, EG664832, LOC100039799, Ptpru, Mecr, Sfrs4, EG664865, EG623230
Downstream geneLOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041D21.bB6Ng01-041D21.g
ACCDH867957DH867958
length1,131407
definitionDH867957|Mus musculus domesticus DNA, BAC clone: B6Ng01-041D21, 5' end.DH867958|Mus musculus domesticus DNA, BAC clone: B6Ng01-041D21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,601,765 - 131,602,900)(131,762,726 - 131,763,138)
sequence
gaattccctcataaaaaacgaacacatgcccaaagccacagcgcaggtga
cagatcaagaaatataactgacaacaaaaaaacaacacatacacttggca
tctggctccccctctagctaaaagctatcataaacgcatcaaagcactac
cttctagtaattcggggttattttataatgtctgtaattcatcaacaaaa
tggggaaatccttgtaaaaatttcatctttgcagattttactcagacaaa
aaagcaaaaccattcataagaaaagagtagttgaagctgttcttacttag
ctcacaaacaaaacaaaaatgactgatgtcatgcccaggtactcggtggg
ggaaaaacatgtcctatggaagtatcgatgaatccacatctgaatatgca
tttgacaatcacgaacccagtaagactcctggaaaagtacactggcagct
ctaccagtgagcaccagcctgctccttagataacaaggaaacagactgag
tctaaacagactgatttcagaaccacactccggccctgatattttcaagt
catgaaatcaggccatgatcaccaatttgatatattcaaaaagtaatgag
aatggtgttggagagatggacttatcagttacaagcactggtcactcttc
cagaggatctgagttcaattcccagtactcacataggagctaacactgtc
tgtaactccattccctcccacagacatacatgcaagtgggcaagcaccaa
tacacataaaataattatttttaaaaataaaaatgagaaaactctacaca
tcccaacaaaatttataggtagcatattttagatcccaatctgatgacaa
gatgatgcccctattctgacctccaaaggtaccaggcatacacaatctgt
tatcaaggtatctgcaaaaaaaactccaagaatcttgtggcttttagaca
gtgcctggaacaatttaactctgaagctttcttagaacaggagaaggaaa
gcaaatagcatcttattgcactgtctttcaagagtatgattctgtatgaa
ataaagaacatgaactctgggactggaaagatggctcaatggtttagagc
actgttgctcttgcagagacatgagttcaag
taccttcatgcctgatatcccccccttcccccccccccaaccccccgttt
ccccaattgctgggattataggcatgtactatgaggtctggctcttgtgc
tgggaaactcgaacactgatcttgcataattcccaccttttttggttgtt
attgttgtttttgtttttccagacaggattttttttctgtgtagccttgg
gttttctggaactcactttgtaggccaggctgacctcatactcatagaga
tctgcctgcttctatctctcaagtgctgagatcaaaggtgtgtgccacca
ccatccagcttcaaaatccccactttttttttttttttttccgagacagg
gtttctctgtatagccctggctgtcctggaactcactctgtaaaacaggc
tggcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_131601765_131602900
seq2: B6Ng01-041D21.b_47_1177

seq1  GAATTCCCTCATAAAAAACGAACACATG-GCAAAGCCACAGCGCAGGTGA  49
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  GAATTCCCTCATAAAAAACGAACACATGCCCAAAGCCACAGCGCAGGTGA  50

seq1  CAGATCAAGAAATATAACTGACAACAAAAAAACAACACATACACTTGGCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCAAGAAATATAACTGACAACAAAAAAACAACACATACACTTGGCA  100

seq1  TCTGGCTCCCCCTCTAGCTAAAAGCTATCATAAACGCATCAAAGCACTAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTCCCCCTCTAGCTAAAAGCTATCATAAACGCATCAAAGCACTAC  150

seq1  CTTCTAGTAATTCGGGGTTATTTTATAATGTCTGTAATTCATCAACAAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGTAATTCGGGGTTATTTTATAATGTCTGTAATTCATCAACAAAA  200

seq1  TGGGGAAATCCTTGTAAAAATTTCATCTTTGCAGATTTTACTCAGACAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAATCCTTGTAAAAATTTCATCTTTGCAGATTTTACTCAGACAAA  250

seq1  AAAGCAAAACCATTCATAAGAAAAGAGTAGTTGAAGCTGTTCTTACTTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAAACCATTCATAAGAAAAGAGTAGTTGAAGCTGTTCTTACTTAG  300

seq1  CTCACAAACAAAACAAAAATGACTGATGTCATGCCCAGGTACTCGGTGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAACAAAACAAAAATGACTGATGTCATGCCCAGGTACTCGGTGGG  350

seq1  GGAAAAACATGTCCTATGGAAGTATCGATGAATCCACATCTGAATATGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAACATGTCCTATGGAAGTATCGATGAATCCACATCTGAATATGCA  400

seq1  TTTGACAATCACGAACCCAGTAAGACTCCTGGAAAAGTACACTGGCAGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAATCACGAACCCAGTAAGACTCCTGGAAAAGTACACTGGCAGCT  450

seq1  CTACCAGTGAGCACCAGCCTGCTCCTTAGATAACAAGGAAACAGACTGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAGTGAGCACCAGCCTGCTCCTTAGATAACAAGGAAACAGACTGAG  500

seq1  TCTAAACAGACTGATTTCAGAACCACACTCCGGCCCTGATATTTTCAAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACAGACTGATTTCAGAACCACACTCCGGCCCTGATATTTTCAAGT  550

seq1  CATGAAATCAGGCCATGATCACCAATTTGATATATTCAAAAAGTAATGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATCAGGCCATGATCACCAATTTGATATATTCAAAAAGTAATGAG  600

seq1  AATGGTGTTGGAGAGATGGACTTATCAGTTACAAGCACTGGTCACTCTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGTTGGAGAGATGGACTTATCAGTTACAAGCACTGGTCACTCTTC  650

seq1  CAGAGGATCTGAGTTCAATTCCCAGTACTCACATAGGAGCTAACACTGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGATCTGAGTTCAATTCCCAGTACTCACATAGGAGCTAACACTGTC  700

seq1  TGTAACTCCATTCCCTCCCACAGACATACATGCAAGTGGGCAAGCACCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTCCATTCCCTCCCACAGACATACATGCAAGTGGGCAAGCACCAA  750

seq1  TACACATAAAATAATTATTTTTAAAAATAAAAATGAGAAAACTCTACACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATAAAATAATTATTTTTAAAAATAAAAATGAGAAAACTCTACACA  800

seq1  TCCCAACAAAATTTATAGGTAGCATATTTTAGATCCCAATCTGATGACAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACAAAATTTATAGGTAGCATATTTTAGATCCCAATCTGATGACAA  850

seq1  GATGATGCCCCTATTCTGACCTCCAAAGGTACCAGGCATACACAATCTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGCCCCTATTCTGACCTCCAAAGGTACCAGGCATACACAATCTGT  900

seq1  TATCAAGGTATCTGCAAAAAAAAACTCCAAGAATCTTGTGGCTTTTAGAC  949
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATCAAGGTATCTGC-AAAAAAAACTCCAAGAATCTTGTGGCTTTTAGAC  949

seq1  AGTGCCTGGAACAATTTAACTCTGAAGCTTTCTTAGGAACAGGAGGAAGG  999
      ||||||||||||||||||||||||||||||||||| |||||||| |||||
seq2  AGTGCCTGGAACAATTTAACTCTGAAGCTTTCTTA-GAACAGGA-GAAGG  997

seq1  AAAGCAAATAGCATCTTAATTGCACTGTCTTTCAAGAGTATGAATCTGTA  1049
      ||||||||||||||||| ||||||||||||||||||||||||| ||||||
seq2  AAAGCAAATAGCATCTT-ATTGCACTGTCTTTCAAGAGTATGATTCTGTA  1046

seq1  TGAAATAAAGACCATGAACTCTGGGACTGGAGAGATGGCTCAGTGGTTAA  1099
      ||||||||||| ||||||||||||||||||| |||||||||| ||||| |
seq2  TGAAATAAAGAACATGAACTCTGGGACTGGAAAGATGGCTCAATGGTTTA  1096

seq1  GAGCACTTGTTGCTCTTGCAGAGGACATGAGTTCAAG  1136
      |||||| ||||||||||||||| ||||||||||||||
seq2  GAGCAC-TGTTGCTCTTGCAGA-GACATGAGTTCAAG  1131

seq1: chr4_131762726_131763138
seq2: B6Ng01-041D21.g_71_483 (reverse)

seq1  CAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACA  50
      |||||||||||| | |||||||||||||||||||||||||||||||||||
seq2  CAGGCCAGCCTGTTTTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACA  50

seq1  GAGAAACCCTGTCTCGGAAAAAAAAAAAAAAAAAGTGGGGATTTTGAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCCTGTCTCGGAAAAAAAAAAAAAAAAAGTGGGGATTTTGAAGC  100

seq1  TGGATGGTGGTGGCACACACCTTTGATCTCAGCACTTGAGAGATAGAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGTGGTGGCACACACCTTTGATCTCAGCACTTGAGAGATAGAAGC  150

seq1  AGGCAGATCTCTATGAGTATGAGGTCAGCCTGGCCTACAAAGTGAGTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGATCTCTATGAGTATGAGGTCAGCCTGGCCTACAAAGTGAGTTCC  200

seq1  AGAAAACCCAAGGCTACACAGAAAAAAAATCCTGTCTGGAAAAACAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACCCAAGGCTACACAGAAAAAAAATCCTGTCTGGAAAAACAAAAA  250

seq1  CAACAATAACAACCAAAAAAGGTGGGAATTATGCAAGATCAGTGTTCGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATAACAACCAAAAAAGGTGGGAATTATGCAAGATCAGTGTTCGAG  300

seq1  TTTCCCAGCACAAGAGCCAGACCTCATAGTACATGCCTATAATCCCAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAGCACAAGAGCCAGACCTCATAGTACATGCCTATAATCCCAGCA  350

seq1  ATTGGGGAAACGGGGGGGGGGGGGGGGGGGAAGGGGGGGATATCAGGCAT  400
      |||||||||||||||||  |||||||||||||||||||||||||||||||
seq2  ATTGGGGAAACGGGGGGTTGGGGGGGGGGGAAGGGGGGGATATCAGGCAT  400

seq1  GAAGGTAGAATTC  413
      |||||||||||||
seq2  GAAGGTAGAATTC  413