BAC Information

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BAC

Clone NameB6Ng01-041E05
Chromosome4 (Build37)
Map Location 82,201,441 - 82,333,519
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040144, EG668895, LOC100040164, EG545641, Nfib
Downstream geneZdhhc21, Cer1, Frem1, LOC667985, 1810054D07Rik, Snapc3, Psip1, LOC100040611, 4930473A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041E05.bB6Ng01-041E05.g
ACCDH867973DH867974
length974862
definitionDH867973|Mus musculus domesticus DNA, BAC clone: B6Ng01-041E05, 5' end.DH867974|Mus musculus domesticus DNA, BAC clone: B6Ng01-041E05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,201,441 - 82,202,417)(82,332,658 - 82,333,519)
sequence
gaattcactctacagacatacattcttatcactcctttgcttacaaaagc
ttgtctttgtgtaggggaagttttcaagtcttactaatgaatcacagaca
caaggcaggagggagagagcgtctagcattttcctttctgactggtctaa
tacgagaccagaaagctattgagtgaagtaaaacctcccagactttatcc
tttctacccaggaactctttctgtgccagtccttgcagcagcctgagagc
cagacatggttttaggcagggacttttctgcgtcagggacactcagagtc
tgtggtcgacttaggaacaagtagacatagaaactgtagaattaagggat
gaaaacatcatttaatgaaaccccgccctccagacgctcttgatcaaagt
ctgtgcttgcactaagacaatcgatctacagttgcatacataaaattttg
gcaacactctgtcctcagtgctttcaacagcggctttagcccccgagtct
gggcatcgtcccagaactcggatccagttgctttacgcataccagaagac
acaccaccgcagacgaggcccgtgcaaccactttcttttaacctcgcgtc
tgtgagaaattactttccaaaaacataagtgaaacccgatgtcttctctg
ggtggttatttttgcgcctatgaagtcaataaaactctccagatttatta
gacggccctgctgcggaagacaagaccacttcctactccctagcggaaat
gtgggtctttccttcctctaacttttttaccacgcatttttaattttatt
catttcttttatttttccccccagaaaacttgttagactttccaaagata
agtgacttggcctcttagtcatttccagtcttttgcatccagaatgacag
agcaaatgcaccgtaggaggctggggtttctctttttggctcccatctta
aagggagcttgtgtgttgtgtgtg
gaattcatttcaacatctctggaaggcttattctattaattcctctacaa
tatgggtgaggagggatgaccaagaccctatgaattaggagctattatca
ggggaccccatccctaccccagtagtcagtctccacttgagagatgaagg
ggtacaggccacagatgagttctaagaaatccttccatgctcttgaacac
ccacttagcatgactggggactctctggcgatgtgctgggtgtcagggct
gcatatttcagaagggttaaattttccatgacaagccctctgagacaact
tctcttctccaaggcaggacaggaaatgacccgaatgaaagcatcacaca
gtgtcgctggtagcaagcctgggaaactgtgacattacatacaacaccca
aagtgcatgccatttgaaccccgcttgaaaggtggaaggggtggcatgca
tgtgtccttcccacatcaacaaataaacaaaaaatgcaatgttgaattta
gaataaaatataagtacaagattaggtgcgaagtcaccttaaagaagaag
gaaaacagaaaatttcaacttcttggtagcaactgctatgaatctcacaa
aattcagaaagataatattttagtcatttatggtgtgcttctatgctttt
ccttttatattctgcatgttttattgcattttgcatgacatcaattttac
accacttctgtagagaaaaggaaaaggaaagttgttcgaacactagagtc
actgctcaaaaacagtaatgtttgcttcctagagaggtttgtcatcaaat
cctggtcacattgagggtccctttgtaatatactctgcagattcctcctc
tggtaccctcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_82201441_82202417
seq2: B6Ng01-041E05.b_39_1012

seq1  GAATTCACTCTACAGACATACATTCTTATCACTCCTTTGCTTACAAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTACAGACATACATTCTTATCACTCCTTTGCTTACAAAAGC  50

seq1  TTGTCTTTGTGTAGGGGAAGTTTTCAAGTCTTACTAATGAATCACAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTTGTGTAGGGGAAGTTTTCAAGTCTTACTAATGAATCACAGACA  100

seq1  CAAGGCAGGAGGGAGAGAGCGTCTAGCATTTTCCTTTCTGACTGGTCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAGGAGGGAGAGAGCGTCTAGCATTTTCCTTTCTGACTGGTCTAA  150

seq1  TACGAGACCAGAAAGCTATTGAGTGAAGTAAAACCTCCCAGACTTTATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAGACCAGAAAGCTATTGAGTGAAGTAAAACCTCCCAGACTTTATCC  200

seq1  TTTCTACCCAGGAACTCTTTCTGTGCCAGTCCTTGCAGCAGCCTGAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACCCAGGAACTCTTTCTGTGCCAGTCCTTGCAGCAGCCTGAGAGC  250

seq1  CAGACATGGTTTTAGGCAGGGACTTTTCTGCGTCAGGGACACTCAGAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATGGTTTTAGGCAGGGACTTTTCTGCGTCAGGGACACTCAGAGTC  300

seq1  TGTGGTCGACTTAGGAACAAGTAGACATAGAAACTGTAGAATTAAGGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCGACTTAGGAACAAGTAGACATAGAAACTGTAGAATTAAGGGAT  350

seq1  GAAAACATCATTTAATGAAACCCCGCCCTCCAGACGCTCTTGATCAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATCATTTAATGAAACCCCGCCCTCCAGACGCTCTTGATCAAAGT  400

seq1  CTGTGCTTGCACTAAGACAATCGATCTACAGTTGCATACATAAAATTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTTGCACTAAGACAATCGATCTACAGTTGCATACATAAAATTTTG  450

seq1  GCAACACTCTGTCCTCAGTGCTTTCAACAGCGGCTTTAGCCCCCGAGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACACTCTGTCCTCAGTGCTTTCAACAGCGGCTTTAGCCCCCGAGTCT  500

seq1  GGGCATCGTCCCAGAACTCGGATCCAGTTGCTTTACGCATACCAGAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATCGTCCCAGAACTCGGATCCAGTTGCTTTACGCATACCAGAAGAC  550

seq1  ACACCACCGCAGACGAGGCCCGTGCAACCACTTTCTTTTAACCTCGCGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACCGCAGACGAGGCCCGTGCAACCACTTTCTTTTAACCTCGCGTC  600

seq1  TGTGAGAAATTACTTTCCAAAAACATAAGTGAAACCCGATGTCTTCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAAATTACTTTCCAAAAACATAAGTGAAACCCGATGTCTTCTCTG  650

seq1  GGTGGTTATTTTTGCGCCTATGAAGTCAATAAAACTCTCCAGATTTATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTATTTTTGCGCCTATGAAGTCAATAAAACTCTCCAGATTTATTA  700

seq1  GACGGCCCTGCTGCGGAAGACAAGACCACTTCCTACTCCCTAGCGGAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGCCCTGCTGCGGAAGACAAGACCACTTCCTACTCCCTAGCGGAAAT  750

seq1  GTGGGTCTTTCCTTCCTCTAACTTTTTTACCACGCATTTTTAATTTTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCTTTCCTTCCTCTAACTTTTTTACCACGCATTTTTAATTTTATT  800

seq1  CATTTCTTTTATTTTTCCCCCCAGAAAACTTGTTAGACTTTCCAAAGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTTTATTTTTCCCCCCAGAAAACTTGTTAGACTTTCCAAAGATA  850

seq1  AGTGACTTGGCCTCTTAGTCCATTTCCAGTCTTTTGCATCCAAGAATGAC  900
      ||||||||||||||||||| ||||||||||||||||||||| ||||||||
seq2  AGTGACTTGGCCTCTTAGT-CATTTCCAGTCTTTTGCATCC-AGAATGAC  898

seq1  AGAGCAAATGCACCGTAGGAAGCTGGGGTTTCTCTTTTTGCCTCCCATCT  950
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  AGAGCAAATGCACCGTAGGAGGCTGGGGTTTCTCTTTTTGGCTCCCATCT  948

seq1  TAAAGGGAGCTTGTGTGTGTGTGTGTG  977
      |||||||||||||||||| ||||||||
seq2  TAAAGGGAGCTTGTGTGT-TGTGTGTG  974

seq1: chr4_82332658_82333519
seq2: B6Ng01-041E05.g_67_928 (reverse)

seq1  GTGATGGTACCAGAGGAGGAAACTGCAGAGTATATTACAAAGGGACCCTC  50
      |||| |||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTGAGGGTACCAGAGGAGGAATCTGCAGAGTATATTACAAAGGGACCCTC  50

seq1  AATGTGACCAGGATTTGATGACAAAACCTCTCTAGGAAGCAAACATTACT  100
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AATGTGACCAGGATTTGATGAC-AAACCTCTCTAGGAAGCAAACATTACT  99

seq1  GTTTTTGAGCAGTGACTCTAGTGTTCGAACAACTTTCCTTTTCCTTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGAGCAGTGACTCTAGTGTTCGAACAACTTTCCTTTTCCTTTTCT  149

seq1  CTACAGAAGTGGTGTAAAATTGATGTCATGCAAAATGCAATAAAACATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAAGTGGTGTAAAATTGATGTCATGCAAAATGCAATAAAACATGC  199

seq1  AGAATAT-AAAGGAAAAGCATAGAAGCACACCATAAATGACTAAAATATT  249
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATAAAAGGAAAAGCATAGAAGCACACCATAAATGACTAAAATATT  249

seq1  ATCTTTCTGAATTTTGTGAGATTCATAGCAGTTGCTACCAAGAAGTTGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTGAATTTTGTGAGATTCATAGCAGTTGCTACCAAGAAGTTGAA  299

seq1  ATTTTCTGTTTTCCTTCTTCTTTAAGGTGACTTCGCACCTAATCTTGTAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGTTTTCCTTCTTCTTTAAGGTGACTTCGCACCTAATCTTGTAC  349

seq1  TTATATTTTATTCTAAATTCAACATTGCATTTTTTGTTTATTTGTTGATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTTATTCTAAATTCAACATTGCATTTTTTGTTTATTTGTTGATG  399

seq1  TGGGAAGGACACATGCATGCCACCCCTTCCACCTTTCAAGCGGGGTTCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGGACACATGCATGCCACCCCTTCCACCTTTCAAGCGGGGTTCAA  449

seq1  ATGGCATGCACTTTGGGTGTTGTATGTAATGTCACAGTTTCCCAGGCTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATGCACTTTGGGTGTTGTATGTAATGTCACAGTTTCCCAGGCTTG  499

seq1  CTACCAGCGACACTGTGTGATGCTTTCATTCGGGTCATTTCCTGTCCTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAGCGACACTGTGTGATGCTTTCATTCGGGTCATTTCCTGTCCTGC  549

seq1  CTTGGAGAAGAGAAGTTGTCTCAGAGGGCTTGTCATGGAAAATTTAACCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGAAGAGAAGTTGTCTCAGAGGGCTTGTCATGGAAAATTTAACCC  599

seq1  TTCTGAAATATGCAGCCCTGACACCCAGCACATCGCCAGAGAGTCCCCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAATATGCAGCCCTGACACCCAGCACATCGCCAGAGAGTCCCCAG  649

seq1  TCATGCTAAGTGGGTGTTCAAGAGCATGGAAGGATTTCTTAGAACTCATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTAAGTGGGTGTTCAAGAGCATGGAAGGATTTCTTAGAACTCATC  699

seq1  TGTGGCCTGTACCCCTTCATCTCTCAAGTGGAGACTGACTACTGGGGTAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCTGTACCCCTTCATCTCTCAAGTGGAGACTGACTACTGGGGTAG  749

seq1  GGATGGGGTCCCCTGATAATAGCTCCTAATTCATAGGGTCTTGGTCATCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGGTCCCCTGATAATAGCTCCTAATTCATAGGGTCTTGGTCATCC  799

seq1  CTCCTCACCCATATTGTAGAGGAATTAATAGAATAAGCCTTCCAGAGATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCACCCATATTGTAGAGGAATTAATAGAATAAGCCTTCCAGAGATG  849

seq1  TTGAAATGAATTC  862
      |||||||||||||
seq2  TTGAAATGAATTC  862