BAC Information

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BAC

Clone NameB6Ng01-041G23
Chromosome4 (Build37)
Map Location 75,686,310 - 75,834,214
singlet/doubletdoublet
Overlap genePtprd
Upstream geneLOC636847, 3110001D03Rik, LOC623529, LOC100039833, LOC100039884, LOC667845
Downstream geneLOC667858, LOC667862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041G23.bB6Ng01-041G23.g
ACCDH868101DH868102
length9861,051
definitionDH868101|Mus musculus domesticus DNA, BAC clone: B6Ng01-041G23, 5' end.DH868102|Mus musculus domesticus DNA, BAC clone: B6Ng01-041G23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,686,310 - 75,687,294)(75,833,155 - 75,834,214)
sequence
gaattcaagaaaatgagcatatgatgaatgaaaaggcaaggaaagaaaag
agagcagagtgggagccagtacatcttagttcagtcggccagctgaagac
acactaatttcacagtgtttgttaaaaataatctgctgttaattttgatg
attcttgtgtttttttttcctgatgttttccctctgttcacatgatttga
tcttgtctcattgagattaattttgcaagtgtaccatgagagagaattgc
tgattcggatattaagagacacaaattccagctggcttgagacggtgaac
taacatgcccccagggaagtatctgaagtagaaaattagaagtggggagc
tccaactggaagctctggtgatgctctgttctcactgccactccgagggt
aacaggctggaaggatgaccattagaacaacaacgtgacagggttactta
tggggacctgtgaaaagtcacccactgagtttctttatctaaatgctaaa
ttattagtggtatagtaaattaagtaaaacaaaacaaaatgaaaactact
ttatttcttcaagacaattctgtggtgtgatctctagtggctctgtgttc
atgggcgtgaaggtctcctaggagccaatatcttggcagagatgcaacag
aaatgagttgattagatgtagattctctttgtcaatgatatagttatata
tttggaccaatagtttggaggcctttctaaaactttttatataggtggaa
gtattaaactaatttacattttgtggcaggcaaagatgggtgacagcaat
ctaataattcagagtgagcttctccagatgaggccctccccagagaaaga
atggaaatgcaaaaagcacaggagacgttagggttggcatggatctggac
atggaaatgcgctgatgtggacatcattgcagtgcctttaacagagaagg
taatagagaacaagatgtttagacctttttcgagcg
gaattcacttcctctgcgggactacgggaaataatcggctgaattaactt
tttctttcctgtctcttagaaagtagctgagagacggtctcaaatcctgg
atgttaagaagggaattaaaattcatcttgtcttgaaactactgtataat
taattatgccattgttaaatcaaacctataagtaatactattaatattat
tagtaatagaaatacacattagttgcctatctacacacacacatatatat
atacatagctatatgtatgtataaggagaaaagacagagagagggtaaga
gccatgaacagtcagctggatgataaccattgtattatattttctagtag
ttccataaccagctagctatattgtataattacacaattttccaaatcat
agcttggcttagaatagaggtgaaaaagtcctaatgggcatctgaatgca
aggcaatttattattaacttgtcaaaggaatcctgaatatatggttcggc
ccatcgtgtcctgttattgttacggccatgtgctattttcacttgaacaa
ttaagaagtgccttgttcagggagaacgtcagaacctatagtatgtattt
aaaattgaagcaggagaattttgggggtcattattgcgcaagataaattt
aattgctataatcacttcacgtttcaggtctgttgcttcaagagattgtg
ttgtcaagttgaaagtcaatttcttattactgcgttgatgtttttggagt
catgtatcattttgaatcatcttggtttttcaatcatctcaactataatg
cttattcctttccttgtatggttcctgtttctttatatttatgaaggcac
agtagcaccttttgtcatttcttcaacgggactaatctcacctttaccat
atagatctattcaagttcatatttcattttatgttgaataggactagtaa
ggacagccaatatatttcctcctacatacatgtgatgtgcatttgtgatg
tgacctaaaaacaaataaatagtaattaaaaaaaaaaaacaaccttgtga
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_75686310_75687294
seq2: B6Ng01-041G23.b_49_1034

seq1  GAATTCAAGAAAATGAGCATATGATGAATGAAAAGGCAAGGAAAGAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAAAATGAGCATATGATGAATGAAAAGGCAAGGAAAGAAAAG  50

seq1  AGAGCAGAGTGGGAGCCAGTACATCTTAGTTCAGTCGGCCAGCTGAAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGAGTGGGAGCCAGTACATCTTAGTTCAGTCGGCCAGCTGAAGAC  100

seq1  ACACTAATTTCACAGTGTTTGTTAAAAATAATCTGCTGTTAATTTTGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAATTTCACAGTGTTTGTTAAAAATAATCTGCTGTTAATTTTGATG  150

seq1  ATTCTTGTGTTTTTTTTTCCTGATGTTTTCCCTCTGTTCACATGATTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGTGTTTTTTTTTCCTGATGTTTTCCCTCTGTTCACATGATTTGA  200

seq1  TCTTGTCTCATTGAGATTAATTTTGCAAGTGTACCATGAGAGAGAATTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCTCATTGAGATTAATTTTGCAAGTGTACCATGAGAGAGAATTGC  250

seq1  TGATTCGGATATTAAGAGACACAAATTCCAGCTGGCTTGAGACGGTGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCGGATATTAAGAGACACAAATTCCAGCTGGCTTGAGACGGTGAAC  300

seq1  TAACATGCCCCCAGGGAAGTATCTGAAGTAGAAAATTAGAAGTGGGGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGCCCCCAGGGAAGTATCTGAAGTAGAAAATTAGAAGTGGGGAGC  350

seq1  TCCAACTGGAAGCTCTGGTGATGCTCTGTTCTCACTGCCACTCCGAGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTGGAAGCTCTGGTGATGCTCTGTTCTCACTGCCACTCCGAGGGT  400

seq1  AACAGGCTGGAAGGATGACCATTAGAACAACAACGTGACAGGGTTACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCTGGAAGGATGACCATTAGAACAACAACGTGACAGGGTTACTTA  450

seq1  TGGGGACCTGTGAAAAGTCACCCACTGAGTTTCTTTATCTAAATGCTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACCTGTGAAAAGTCACCCACTGAGTTTCTTTATCTAAATGCTAAA  500

seq1  TTATTAGTGGTATAGTAAATTAAGTAAAACAAAACAAAATGAAAACTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGTGGTATAGTAAATTAAGTAAAACAAAACAAAATGAAAACTACT  550

seq1  TTATTTCTTCAAGACAATTCTGTGGTGTGATCTCTAGTGGCTCTGTGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTTCAAGACAATTCTGTGGTGTGATCTCTAGTGGCTCTGTGTTC  600

seq1  ATGGGCGTGAAGGTCTCCTAGGAGCCAATATCTTGGCAGAGATGCAACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCGTGAAGGTCTCCTAGGAGCCAATATCTTGGCAGAGATGCAACAG  650

seq1  AAATGAGTTGATTAGATGTAGATTCTCTTTGTCAATGATATAGTTATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGTTGATTAGATGTAGATTCTCTTTGTCAATGATATAGTTATATA  700

seq1  TTTGGACCAATAGTTTGGAGGCCTTTCTAAAACTTTTTATATAGGTGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACCAATAGTTTGGAGGCCTTTCTAAAACTTTTTATATAGGTGGAA  750

seq1  GTATTAAACTAATTTACATTTTGTGGCAGGCAAAGATGGGTGACAGCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAAACTAATTTACATTTTGTGGCAGGCAAAGATGGGTGACAGCAAT  800

seq1  CTAATAATTCAGAGTGAGCTTCTCCAGATGAGGCCCTCCCCAGAGAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTAATAATTCAGAGTGAGCTTCTCCAGATGAGGCCCTCCCCAGAG-AAAG  849

seq1  AATGGAAATGCAAAAAGCACAGGAGACGTTAGGCTGGGCATGGATCTGGA  900
      ||||||||||||||||||||||||||||||||| | ||||||||||||||
seq2  AATGGAAATGCAAAAAGCACAGGAGACGTTAGGGTTGGCATGGATCTGGA  899

seq1  CATGGAAATGCGCTGATGTGGACATCATTGCAGTG-CTTTAACAGAGAAG  949
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CATGGAAATGCGCTGATGTGGACATCATTGCAGTGCCTTTAACAGAGAAG  949

seq1  GTAATAGAGACAAAGATGTTTAGACC-TTTTCGAGCG  985
      ||||||||||  |||||||||||||| ||||||||||
seq2  GTAATAGAGAACAAGATGTTTAGACCTTTTTCGAGCG  986

seq1: chr4_75833155_75834214
seq2: B6Ng01-041G23.g_68_1118 (reverse)

seq1  ATCACAAAGTTGTTTTTTTTTTTTTTATTACTATTATTTTGTTTTTA-GT  49
      ||||||| |||| |||||||||||| |||||||||  |||||||||| ||
seq2  ATCACAAGGTTG-TTTTTTTTTTTTAATTACTATTTATTTGTTTTTAGGT  49

seq1  CACATCACAAATGCACATCAACAATGTATTGTAAGGAGGAAATATATT-G  98
      ||||||||||||||||||||   ||||| ||| ||||||||||||||| |
seq2  CACATCACAAATGCACATCA--CATGTA-TGT-AGGAGGAAATATATTGG  95

seq1  CTGTTCCTAACATATGTCCTATTCAAACATTAAAATGAAATATGAAACTT  148
      ||| |||| || || ||||||||| |||| |||||||||||||| |||||
seq2  CTG-TCCTTAC-TA-GTCCTATTC-AACA-TAAAATGAAATATG-AACTT  139

seq1  GAATAGATCTATATGGTAAAGGTGAGATTAGTCCCGTTGAAGAAATGACA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGATCTATATGGTAAAGGTGAGATTAGTCCCGTTGAAGAAATGACA  189

seq1  AAAGGTGCTACTGTGCCTTCATAAATATAAAGAAACAGGAACCATACAAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGCTACTGTGCCTTCATAAATATAAAGAAACAGGAACCATACAAG  239

seq1  GAAAGGAATAAGCATTATAGTTGAGATGATTGAAAAACCAAGATGATTCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAATAAGCATTATAGTTGAGATGATTGAAAAACCAAGATGATTCA  289

seq1  AAATGATACATGACTCCAAAAACATCAACGCAGTAATAAGAAATTGACTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATACATGACTCCAAAAACATCAACGCAGTAATAAGAAATTGACTT  339

seq1  TCAACTTGACAACACAATCTCTTGAAGCAACAGACCTGAAACGTGAAGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTGACAACACAATCTCTTGAAGCAACAGACCTGAAACGTGAAGTG  389

seq1  ATTATAGCAATTAAATTTATCTTGCGCAATAATGACCCCCAAAATTCTCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGCAATTAAATTTATCTTGCGCAATAATGACCCCCAAAATTCTCC  439

seq1  TGCTTCAATTTTAAATACATACTATAGGTTCTGACGTTCTCCCTGAACAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAATTTTAAATACATACTATAGGTTCTGACGTTCTCCCTGAACAA  489

seq1  GGCACTTCTTAATTGTTCAAGTGAAAATAGCACATGGCCGTAACAATAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTCTTAATTGTTCAAGTGAAAATAGCACATGGCCGTAACAATAAC  539

seq1  AGGACACGATGGGCCGAACCATATATTCAGGATTCCTTTGACAAGTTAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACGATGGGCCGAACCATATATTCAGGATTCCTTTGACAAGTTAAT  589

seq1  AATAAATTGCCTTGCATTCAGATGCCCATTAGGACTTTTTCACCTCTATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTGCCTTGCATTCAGATGCCCATTAGGACTTTTTCACCTCTATT  639

seq1  CTAAGCCAAGCTATGATTTGGAAAATTGTGTAATTATACAATATAGCTAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCAAGCTATGATTTGGAAAATTGTGTAATTATACAATATAGCTAG  689

seq1  CTGGTTATGGAACTACTAGAAAATATAATACAATGGTTATCATCCAGCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTATGGAACTACTAGAAAATATAATACAATGGTTATCATCCAGCTG  739

seq1  ACTGTTCATGGCTCTTACCCTCTCTCTGTCTTTTCTCCTTATACATACAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCATGGCTCTTACCCTCTCTCTGTCTTTTCTCCTTATACATACAT  789

seq1  ATAGCTATGTATATATATATGTGTGTGTGTAGATAGGCAACTAATGTGTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTATGTATATATATATGTGTGTGTGTAGATAGGCAACTAATGTGTA  839

seq1  TTTCTATTACTAATAATATTAATAGTATTACTTATAGGTTTGATTTAACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTACTAATAATATTAATAGTATTACTTATAGGTTTGATTTAACA  889

seq1  ATGGCATAATTAATTATACAGTAGTTTCAAGACAAGATGAATTTTAATTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATAATTAATTATACAGTAGTTTCAAGACAAGATGAATTTTAATTC  939

seq1  CCTTCTTAACATCCAGGATTTGAGACCGTCTCTCAGCTACTTTCTAAGAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTAACATCCAGGATTTGAGACCGTCTCTCAGCTACTTTCTAAGAG  989

seq1  ACAGGAAAGAAAAAGTTAATTCAGCCGATTATTTCCCGTAGTCCCGCAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAAGAAAAAGTTAATTCAGCCGATTATTTCCCGTAGTCCCGCAGA  1039

seq1  GGAAGTGAATTC  1060
      ||||||||||||
seq2  GGAAGTGAATTC  1051