BAC Information

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BAC

Clone NameB6Ng01-041P16
Chromosome4 (Build37)
Map Location 87,756,134 - 87,872,476
singlet/doubletdoublet
Overlap geneBC057079
Upstream geneSlc24a2, Mllt3
Downstream genePtplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1, LOC100040617, Mtap, LOC625574
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041P16.bB6Ng01-041P16.g
ACCDH868487DH868488
length569652
definitionDH868487|Mus musculus domesticus DNA, BAC clone: B6Ng01-041P16, 5' end.DH868488|Mus musculus domesticus DNA, BAC clone: B6Ng01-041P16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,756,134 - 87,756,706)(87,871,826 - 87,872,476)
sequence
tcttatgatagaaaatgggttgggggtggtggtgcgcgcctttaacctca
gtacaggagtagtagagacaggtgggtctctgaggtattggtcaagctgg
tctacatactgagtttcactccagccaaggctacattgtgagaatttggc
tcaagaaaaatatgaaactgcaaacaaacccaataacagcagcaacagca
gcaacaacaacaacaacaacaacaacacaaacaaacaaaacacacacaca
cacaccaagtcctgtagttaaaaagagcctaagattcccattcaaaccat
agttaactttaaactcacatgatcaaaaatacacctgggactttcttgag
gttgggctgctctagcagggtagggagtctcagggagatggaagggagaa
gatgaatcagctgattggacaacatgggcaagaacgcttgggaataagag
gtttagtctcaggtggggaagtgtttgaggggttgaaggagtgagctgaa
actcagtaaggctgaagactggattacattaggccttttgggttgtggta
aggagttgagtttttgttt
gaattcttaagggttttcgcaggtgatagggcttcgctggaacagaaact
ccattgctcacagcttggacaaatgaagaaagacaattttttgaactggc
ttcttatttcccattttaattaaaaagaaaaggttatcttagattgcctt
caacgggtctcaatcaattatctcctgtgtaacagtttctaccaagacac
tctgacagatccttagttctgggaatggcaatcagtgcatttagtggcat
tttataaaacagtgtatttaatcatgtggcttttaaacaaatgttttaat
tatattgtcagtagagaaataaaatgctgtatttttgccctaaaactaga
gctgctttaagagctgtggacctcaagaaacatcagccttttctctatct
ggttcaaaaaaatatcagaaatgtttacactaaataatctttgattctgt
attatctatatcattcttaaggtataatagttgacactgttggtcttccc
ccagtacacacaaagcagagaactgacttgtctggcttcagtgggagtga
atatgcctaatcctatggagacttgatgccccaggaagaggagataccct
gccaggacaccctctcagaggcaaaggagaatttttgttggggggggggg
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_87756134_87756706
seq2: B6Ng01-041P16.b_46_620

seq1  GAATTCTCTTATGATAGAAAATGGGTTGGGGGTGGTGGTGCGCGCCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTATGATAGAAAATGGGTTGGGGGTGGTGGTGCGCGCCTTTA  50

seq1  ACCTCAGTACAGGAGTAGTAGAGACAGGTGGGTCTCTGAGGTATTGGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGTACAGGAGTAGTAGAGACAGGTGGGTCTCTGAGGTATTGGTCA  100

seq1  AGCTGGTCTACATACTGAGTTTCACTCCAGCCAAGGCTACATTGTGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTCTACATACTGAGTTTCACTCCAGCCAAGGCTACATTGTGAGAA  150

seq1  TTTGGCTCAAGAAAAATATGAAACTGCAAACAAACCCAATAACAGCAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTCAAGAAAAATATGAAACTGCAAACAAACCCAATAACAGCAGCA  200

seq1  ACAGCAGCAACAACAACAACAACAACAACAACACAAACAAACAAAACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGCAACAACAACAACAACAACAACAACACAAACAAACAAAACACA  250

seq1  CACACACACACCAAGTCCTGTAGTTAAAAAGAGCCTAAGATTCCCATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACCAAGTCCTGTAGTTAAAAAGAGCCTAAGATTCCCATTCA  300

seq1  AACCATAGTTAACTTTAAACTCACATGATCAAAAATACACCTGGGACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATAGTTAACTTTAAACTCACATGATCAAAAATACACCTGGGACTTT  350

seq1  CTTGAGGTTGGGCTGCTCTAGCAGGGTAGGGAGTCTCAGGGAGATGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGTTGGGCTGCTCTAGCAGGGTAGGGAGTCTCAGGGAGATGGAAG  400

seq1  GGAGAAGATGAATCAGCTGATTGGACAACATGGGCAAGAACGCTTGGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGATGAATCAGCTGATTGGACAACATGGGCAAGAACGCTTGGGAA  450

seq1  TAAGAGGTTTAGTCTCAGGTGGGGAAGTGTTTGAGGGGTTGAAGGAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGTTTAGTCTCAGGTGGGGAAGTGTTTGAGGGGTTGAAGGAGTGA  500

seq1  GCTGAAACTCAGTAAGGCTGAAGACTGGATTACATTAGGCC-TTTGGGTT  549
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCTGAAACTCAGTAAGGCTGAAGACTGGATTACATTAGGCCTTTTGGGTT  550

seq1  GTGGTAAGGAGTTGAG-TTTTGTTT  573
      |||||||||||||||| ||||||||
seq2  GTGGTAAGGAGTTGAGTTTTTGTTT  575

seq1: chr4_87871826_87872476
seq2: B6Ng01-041P16.g_69_720 (reverse)

seq1  CCCCCCCCCCCCCAAC-AGAATTCTCCTTTGCCTCTGAGAGGGTGTCCTG  49
      |||||||||||||||| | |||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCCAACAAAAATTCTCCTTTGCCTCTGAGAGGGTGTCCTG  50

seq1  GCAGGGTATCTCCTCTTCCTGGGGCATCAAGTCTCCATAGGATTAGGCAT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTATCTCCTCTTCCTGGGGCATCAAGTCTCCATAGGATTAGGCAT  100

seq1  ATTCACTCCCACTGAAGCCAGACAAGTCAGTTCTCTGCTTTGTGTGTACT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTCCCACTGAAGCCAGACAAGTCAGTTCTCTGCTTTGTGTGTACT  150

seq1  GGGGGAAGACCAACAGTGTCAACTATTATACCTTAAGAATGATATAGATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAGACCAACAGTGTCAACTATTATACCTTAAGAATGATATAGATA  200

seq1  ATACAGAATCAAAGATTATTTAGTGTAAACATTTCTGATATTTTTTTGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAATCAAAGATTATTTAGTGTAAACATTTCTGATATTTTTTTGAA  250

seq1  CCAGATAGAGAAAAGGCTGATGTTTCTTGAGGTCCACAGCTCTTAAAGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATAGAGAAAAGGCTGATGTTTCTTGAGGTCCACAGCTCTTAAAGCA  300

seq1  GCTCTAGTTTTAGGGCAAAAATACAGCATTTTATTTCTCTACTGACAATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGTTTTAGGGCAAAAATACAGCATTTTATTTCTCTACTGACAATA  350

seq1  TAATTAAAACATTTGTTTAAAAGCCACATGATTAAATACACTGTTTTATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAAACATTTGTTTAAAAGCCACATGATTAAATACACTGTTTTATA  400

seq1  AAATGCCACTAAATGCACTGATTGCCATTCCCAGAACTAAGGATCTGTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCACTAAATGCACTGATTGCCATTCCCAGAACTAAGGATCTGTCA  450

seq1  GAGTGTCTTGGTAGAAACTGTTACACAGGAGATAATTGATTGAGACCCGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCTTGGTAGAAACTGTTACACAGGAGATAATTGATTGAGACCCGT  500

seq1  TGAAGGCAATCTAAGATAACCTTTTCTTTTTAATTAAAATGGGAAATAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCAATCTAAGATAACCTTTTCTTTTTAATTAAAATGGGAAATAAG  550

seq1  AAGCCAGTTCAAAAAATTGTCTTTCTTCATTTGTCCAAGCTGTGAGCAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGTTCAAAAAATTGTCTTTCTTCATTTGTCCAAGCTGTGAGCAAT  600

seq1  GGAGTTTCTGTTCCAGCGAAGCCCTATCACCTGCGAAAACCCTTAAGAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTCTGTTCCAGCGAAGCCCTATCACCTGCGAAAACCCTTAAGAAT  650

seq1  TC  651
      ||
seq2  TC  652