BAC Information

Click to search

BAC

Clone NameB6Ng01-042B20
Chromosome4 (Build37)
Map Location 6,705,714 - 6,866,155
singlet/doubletdoublet
Overlap geneTox, LOC100039421
Upstream gene1700012H17Rik, LOC669309, 3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414
Downstream geneLOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042B20.bB6Ng01-042B20.g
ACCDH868580DH868581
length1,1451,056
definitionDH868580|Mus musculus domesticus DNA, BAC clone: B6Ng01-042B20, 5' end.DH868581|Mus musculus domesticus DNA, BAC clone: B6Ng01-042B20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,865,015 - 6,866,155)(6,705,714 - 6,706,772)
sequence
gaattcagatgttttctggctacgtttctcttcctacttttgttaagaaa
ggcctagaaaagcccaagaacttgcttagaccttggccatcaaggtgtga
ttgatggtgcaagacagaacagcacaggctatcttataatccaggatgca
ggtaaggaatctagatgtcacagtgcccattgtaatctcagttcttggga
tacagagaaaaacagatctctggagttttctaggcaacaagcctatccta
cttagtgaaatccaggccaatgagagatcttgtctctgttcataaaacaa
ggtggataatgacctctggcttctgtacatgcatacacacctccctttcc
tccattcctcacacgagaaaacctctacttatttaatggacatttaaagt
aaaaggactgagcattacggtacagaactgtaattataggcagttagaag
acagggactataaatggacttcttcttgggccacagagtgcgttcaaggc
cagcctggataatacagtaaaatcctcagctcaatataaaaagctaaaaa
aaaaacaagggcagagatatagctcagtggttgcctagttgcctggttgc
ctgctgtttgttaattgcatacaaatagacaaaaagatgcctggtatagg
aggctcttgccagaaaatagccttttgggccaattgcagtgagcagagtg
gtgcaaagccagcaattcagccactggctttgttgttgctgcagctagtt
ttgtttttcctgcatgtgttatagttatcttttttctcacgatatgcata
gtgcagaatacctggctgtgtacatgagtgtggaggccagaggtcaatgg
aaagtttcttccttcctcactctcctctgtttttgatgaggatctcttgt
ggaacttgatgatgactggtcagtgagctccatggagctacctgtctctc
ttctcccagccctggggttataggcatgtggcactgcttatatcaaatgc
tggggttcaaacctcagcttgggcagtagctccttacccactgagccatt
tccccagcctcaggattaataatttagaaaaacaatatttaatttagaaa
gtgtagaatgcatgcatgtggtccattggtgtgtactgatgtatg

gaattcacacagtgggaggctatacaataaaaacagaagaggaagtgaca
gctaacatttcaaagatgatcaaataaaaaagacaggagttagaagatgg
agaggtggctctctgggttgagtactcacaaggacatgtgttcaaatccc
caggctccatagaaaagaaaatgtcggagcagtggcaaaaacccatagct
tctttctcaggtgtggcaaagacagatgcctcctgaggcaggctggctag
ccactctgacagaaactgaaagccaaggttcactctaggtaaaaacaaaa
caaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaactgtaaagat
ctaatttagaaagacacctgacatcaacctctggtttctttgttcccaaa
cctggggtgtggacacctccctcccacagggacacaagtgctcataccca
catgtacacaggtgtgctcacatacacatttacataattaattatttaag
tgaacagaaataaataaagtagaacataatcagtttttcagaatgtagtt
ttgcttgtctgtatctaggcattggagtgcaggcaacggtgtcagattcc
ctggccctgaagtgacagacagctgagagttgttgcatgtggtgctgagc
ttaggtccttttcaagagcagcaagcacctggaaccagtgagtaccttgc
cacccccagcacatcattcttattttaaaaatgtgggaatggaagactgc
acagacaggagggagaactcactcatgtgtaggaaggaaatgtgcagaaa
agagatctgatttctttgtttgcaaggaagaagggtagatgtgggagatg
gaaataagagactgttttctggcttagtgttatgtgatgtgatgtgatgt
gatgtaaactctatgttagttcctataaacaaaatacacacacacacatt
atatacataattttcaaaagaaaacagtacaggtttattatatgaacgag
acctaaggagtgattagagtttagcaatgggaaatcttccaagcaccttt
gagatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_6865015_6866155
seq2: B6Ng01-042B20.b_40_1184 (reverse)

seq1  CATACAT--ATACACACAAATGGA-CACATGCATGCA-TCTACACTTTCT  46
      |||||||   ||||||| |||||| |||||||||||| ||||||||||||
seq2  CATACATCAGTACACACCAATGGACCACATGCATGCATTCTACACTTTCT  50

seq1  AAATTAAATATTGTTTTTCTAAATTATTAAATCTTGA-GCTGAGGAAATG  95
      |||||||||||||||||||||||||||| |||| ||| |||| |||||||
seq2  AAATTAAATATTGTTTTTCTAAATTATT-AATCCTGAGGCTGGGGAAATG  99

seq1  GCTCAGTGGGTAAAGAGCTACTGCACAAGCTGAGGTTTGAACCCCAGCAT  145
      ||||||||||||| |||||||||| |||||||||||||||||||||||||
seq2  GCTCAGTGGGTAAGGAGCTACTGCCCAAGCTGAGGTTTGAACCCCAGCAT  149

seq1  TTGATATAAGCAGTGCCACATGCCTATAACCCCAGGGCTGGGAGAAGAGA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATAAGCAGTGCCACATGCCTATAACCCCAGGGCTGGGAGAAGAGA  199

seq1  GACAGGTAGCTCCATGGAGCTCACTGACCAGTCATCATCAAGTTCCACAA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTAGCTCCATGGAGCTCACTGACCAGTCATCATCAAGTTCCACAA  249

seq1  GAGATCCTCATCAAAAACAGAGGAGAGTGAGGAAGGAAGAAACTTTCCAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCTCATCAAAAACAGAGGAGAGTGAGGAAGGAAGAAACTTTCCAT  299

seq1  TGACCTCTGGCCTCCACACTCATGTACACAGCCAGGTATTCTGCACTATG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCTGGCCTCCACACTCATGTACACAGCCAGGTATTCTGCACTATG  349

seq1  CATATCCTGAGAAAAAAGATAACTATAACACATGCAGGAAAAACAAAACT  395
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCGTGAGAAAAAAGATAACTATAACACATGCAGGAAAAACAAAACT  399

seq1  AGCTGCAGCAACAACAAAGCCAGTGGCTGAATTGCTGGCTTTGCACCACT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAGCAACAACAAAGCCAGTGGCTGAATTGCTGGCTTTGCACCACT  449

seq1  CTGCTCACTGCAATTGGCCCAAAAGGCTATTTTCTGGCAAGAGCCTCCTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCACTGCAATTGGCCCAAAAGGCTATTTTCTGGCAAGAGCCTCCTA  499

seq1  TACCAGGCATCTTTTTGTCTATTTGTATGCAATTAACAAACAGCAGGCAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGCATCTTTTTGTCTATTTGTATGCAATTAACAAACAGCAGGCAA  549

seq1  CCAGGCAACTAGGCAACCACTGAGCTATATCTCTGCCCTTGTTTTTTTTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAACTAGGCAACCACTGAGCTATATCTCTGCCCTTGTTTTTTTTT  599

seq1  TAGCTTTTTATATTGAGCTGAGGATTTTACTGTATTATCCAGGCTGGCCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTTTATATTGAGCTGAGGATTTTACTGTATTATCCAGGCTGGCCT  649

seq1  TGAACGCACTCTGTGGCCCAAGAAGAAGTCCATTTATAGTCCCTGTCTTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACGCACTCTGTGGCCCAAGAAGAAGTCCATTTATAGTCCCTGTCTTC  699

seq1  TAACTGCCTATAATTACAGTTCTGTACCGTAATGCTCAGTCCTTTTACTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCCTATAATTACAGTTCTGTACCGTAATGCTCAGTCCTTTTACTT  749

seq1  TAAATGTCCATTAAATAAGTAGAGGTTTTCTCGTGTGAGGAATGGAGGAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTCCATTAAATAAGTAGAGGTTTTCTCGTGTGAGGAATGGAGGAA  799

seq1  AGGGAGGTGTGTATGCATGTACAGAAGCCAGAGGTCATTATCCACCTTGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGTGTGTATGCATGTACAGAAGCCAGAGGTCATTATCCACCTTGT  849

seq1  TTTATGAACAGAGACAAGATCTCTCATTGGCCTGGATTTCACTAAGTAGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAACAGAGACAAGATCTCTCATTGGCCTGGATTTCACTAAGTAGG  899

seq1  ATAGGCTTGTTGCCTAGAAAACTCCAGAGATCTGTTTTTCTCTGTATCCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTTGTTGCCTAGAAAACTCCAGAGATCTGTTTTTCTCTGTATCCC  949

seq1  AAGAACTGAGATTACAATGGGCACTGTGACATCTAGATTCCTTACCTGCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTGAGATTACAATGGGCACTGTGACATCTAGATTCCTTACCTGCA  999

seq1  TCCTGGATTATAAGATAGCCTGTGCTGTTCTGTCTTGCACCATCAATCAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGATTATAAGATAGCCTGTGCTGTTCTGTCTTGCACCATCAATCAC  1049

seq1  ACCTTGATGGCCAAGGTCTAAGCAAGTTCTTGGGCTTTTCTAGGCCTTTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGATGGCCAAGGTCTAAGCAAGTTCTTGGGCTTTTCTAGGCCTTTC  1099

seq1  TTAACAAAAGTAGGAAGAGAAACGTAGCCAGAAAACATCTGAATTC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAAAGTAGGAAGAGAAACGTAGCCAGAAAACATCTGAATTC  1145


seq1: chr4_6705714_6706772
seq2: B6Ng01-042B20.g_65_1120

seq1  GAATTCACACAGTGGGAGGCTATACAATAAAAACAGAAGAGGAAGTGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACAGTGGGAGGCTATACAATAAAAACAGAAGAGGAAGTGACA  50

seq1  GCTAACATTTCAAAGATGATCAAATAAAAAAGACAGGAGTTAGAAGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACATTTCAAAGATGATCAAATAAAAAAGACAGGAGTTAGAAGATGG  100

seq1  AGAGGTGGCTCTCTGGGTTGAGTACTCACAAGGACATGTGTTCAAATCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGGCTCTCTGGGTTGAGTACTCACAAGGACATGTGTTCAAATCCC  150

seq1  CAGGCTCCATAGAAAAGAAAATGTCGGAGCAGTGGCAAAAACCCATAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCCATAGAAAAGAAAATGTCGGAGCAGTGGCAAAAACCCATAGCT  200

seq1  TCTTTCTCAGGTGTGGCAAAGACAGATGCCTCCTGAGGCAGGCTGGCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCAGGTGTGGCAAAGACAGATGCCTCCTGAGGCAGGCTGGCTAG  250

seq1  CCACTCTGACAGAAACTGAAAGCCAAGGTTCACTCTAGGTAAAAACAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTGACAGAAACTGAAAGCCAAGGTTCACTCTAGGTAAAAACAAAA  300

seq1  CAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACTGTAAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACTGTAAAGAT  350

seq1  CTAATTTAGAAAGACACCTGACATCAACCTCTGGTTTCTTTGTTCCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTAGAAAGACACCTGACATCAACCTCTGGTTTCTTTGTTCCCAAA  400

seq1  CCTGGGGTGTGGACACCTCCCTCCCACAGGGACACAAGTGCTCATACCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGTGTGGACACCTCCCTCCCACAGGGACACAAGTGCTCATACCCA  450

seq1  CATGTACACAGGTGTGCTCACATACACATTTACATAATTAATTATTTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACACAGGTGTGCTCACATACACATTTACATAATTAATTATTTAAG  500

seq1  TGAACAGAAATAAATAAAGTAGAACATAATCAGTTTTTCAGAATGTAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGAAATAAATAAAGTAGAACATAATCAGTTTTTCAGAATGTAGTT  550

seq1  TTGCTTGTCTGTATCTAGGCATTGGAGTGCAGGCAACGGTGTCAGATTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGTCTGTATCTAGGCATTGGAGTGCAGGCAACGGTGTCAGATTCC  600

seq1  CTGGCCCTGAAGTGACAGACAGCTGAGAGTTGTTGCATGTGGTGCTGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCTGAAGTGACAGACAGCTGAGAGTTGTTGCATGTGGTGCTGAGC  650

seq1  TTAGGTCCTTTTCAAGAGCAGCAAGCACCTGGAACCAGTGAGTACCTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTCCTTTTCAAGAGCAGCAAGCACCTGGAACCAGTGAGTACCTTGC  700

seq1  CACCCCCAGCACATCATTCTTATTTTAAAAATGTGGGAATGGAAGACTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCAGCACATCATTCTTATTTTAAAAATGTGGGAATGGAAGACTGC  750

seq1  ACAGACAGGAGGGAGAACTCACTCATGTGTAGGAAGGAAATGTGCAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGGAGGGAGAACTCACTCATGTGTAGGAAGGAAATGTGCAGAAA  800

seq1  AGAGATCTGATTTCTTTGTTTGCAAGGAAGAAGGGTAGATGTGGGAGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCTGATTTCTTTGTTTGCAAGGAAGAAGGGTAGATGTGGGAGATG  850

seq1  GAAATAAGAGACTGTTTTCTGGCTTAGTGTTATGTGATGTGATGTGATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAGAGACTGTTTTCTGGCTTAGTGTTATGTGATGTGATGTGATGT  900

seq1  GATGTAAACTTCTATGTTTAGTTCCTATAAAC-AAATACACACACACACA  949
      ||||||||| |||||| ||||||||||||||| |||||||||||||||||
seq2  GATGTAAAC-TCTATG-TTAGTTCCTATAAACAAAATACACACACACACA  948

seq1  TTATATACATAATTTTCAAAAGAAAACAGTAACAGGTTTATAATATGGAA  999
      |||||||||||||||||||||||||||||| |||||||||| |||| |||
seq2  TTATATACATAATTTTCAAAAGAAAACAGT-ACAGGTTTATTATAT-GAA  996

seq1  GGAGACCT-AGGAGTGA-TAGAGTATAGCAAT-GGAAATCTTCCACAGCA  1046
       ||||||| |||||||| |||||| ||||||| |||||||||||| ||||
seq2  CGAGACCTAAGGAGTGATTAGAGTTTAGCAATGGGAAATCTTCCA-AGCA  1045

seq1  CCCTTTGAAGATT  1059
       |||||| |||||
seq2  -CCTTTG-AGATT  1056


| Home | SequenceCutter | Blast | Download |