BAC Information

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BAC

Clone NameB6Ng01-042D07
Chromosome4 (Build37)4 (Build37)
Map Location 145,660,380 - 145,661,212145,039,299 - 145,040,011
singlet/doubletsingletsinglet
Overlap geneLOC100041433
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390
Downstream geneLOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042D07.bB6Ng01-042D07.g
ACCDH868649DH868650
length1,0551,014
definitionDH868649|Mus musculus domesticus DNA, BAC clone: B6Ng01-042D07, 5' end.DH868650|Mus musculus domesticus DNA, BAC clone: B6Ng01-042D07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(145,660,380 - 145,661,212)(145,039,299 - 145,040,011)
sequence
gaattctctgatgaactctcagactgcctttgtcagtaaagcatttgtca
cattcattacatttgtaaggtttctctcctgtatgaattctctgatgctt
tctcagagtgaatttctcagtaaagcatttgtcgcattcactacatttgt
aaggtttctctcctgtatgaattctctgatgctttctcagagtgcatttg
tcagtaaagcatttgtcgcattcactacatttgtaaggtttctcccctga
atgaattctacgatgaatactaagatgggatggttgggtaaagcatttgt
cacactcactgcatttgtaaggtttctctcctgtatgaattctctgatga
actctcagactgcctttgtcagtaaagcatttgtcacattcattacattt
gtaaggtttctctcctgtatgaattctctgatgctttctcagagtgcatt
tgtcagtaaagcatttgtcgcattcactacatttgtaaggtttctctcct
gtatgaattctctgatgctttctcagagtgcatttgtcagtaaagcattt
gtcgcattcactacatttgtaaggtttctctcctgaatgaattgtatgat
gaatactaagatgggaaggttgggtaaagcatttgtcactttcactatat
atgtaagatttctttcctggataaattctctgctgactttgaagattgtc
actctgagtaaagcatttgtcaaattcaccacaagtgtaagtgttcattt
cactattgttttgtctagaaaccaaaacctcatcaagatttttatttctg
ttgtgttctttcttctctatgtgggttccttgattgagactaatgataga
agacccctttaaacagtttacacagtctttatatgtgcaaactcctttag
tggtcccagtttatgtctttttagtttgaggattggagagtggcatctct
gtggtagtgttataagtgtacttcggaggattcatggatcaccatttcta
acctcattacatttagagactctttcggtaaggccatgctcattgacatg
tgctg
gaattccttactccttatataagtaaatcatgtcacctctaattgccccc
cacccgttttttttttttcaggaaatcattgcatatatggaatgtatggg
aaggtcatggatcaagacagccagtacattgttcttgaacacatgaatat
tcaagagaagtcttctaaatgtaacaagcttagcaatgtgtttctagaat
ccccccattatacacctcacaaatgtactgaatgtgacaaatgcttttcc
ccaaaatctcatcttaataatcatcagaaacttcatgcaggagagaaacc
ttacaaatgcagtggatgtgacaagtgctttactgaaaaaggcactctga
gaaggcatcagagaattcatacaggagaaaaaccttacaaatgcagtgaa
tgtgacaaatgctttactagaaaaggcactctgagaattcatcagagaat
tcatacaggagagaaaccttacaaatgcagtgaatgtgacaaatgcttta
cccaaaaatttaatttgagatctcatcagagaattcatacaggagagaaa
ccttacaaatgcagtgaatgtgacaattgctttactgaaaaaggcaatct
gagaaggcatcagagaattcatacaggagagaaaccttacaaatgtagtg
aatgtgacaaattctttacccgaaaatcccatcttagtattcatcagaat
ttcatacaggagagaaaccttacaaatgcagtgaatgtgagaaatactaa
caaagacaatctgagaattcatcagagaattaataatggataaaaacctt
acaaatgtagtcaaagtgacaaatgctttacccgaaaaatccaatcttag
tattcatcagaaagttcatacaggagagaaaccttacaaatatagtcaat
gtgacaaatgctttacctaccaagccaagcttagtattcatcagaaaatt
catacagagagaagccttacaaatgcagtgaatatgagaatgctttacta
acaaaggtaatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145660380_145661212
seq2: B6Ng01-042D07.b_287_1096

seq1  CCTGAATGAATTCTACGATGAAAACTAAGATGGGATGGTTGGGTAAAGCA  50
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCTGAATGAATTCTACGATGAATACTAAGATGGGATGGTTGGGTAAAGCA  50

seq1  TTTGTCACACTCACTGCATTTGTAAGGTTTCTCTCCAGTATGAATTCTCT  100
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTGTCACACTCACTGCATTTGTAAGGTTTCTCTCCTGTATGAATTCTCT  100

seq1  GATGAACTCTCAGATAGCCTTTGTCAGTAAAGCATTTGTCACACTCACTG  150
      ||||||||||||||  ||||||||||||||||||||||||||| ||| | 
seq2  GATGAACTCTCAGACTGCCTTTGTCAGTAAAGCATTTGTCACATTCATTA  150

seq1  CATTTGTAAGGTTTCTCTCCAGTATGAATTCTCTGATGAACTCTCAGATA  200
      |||||||||||||||||||| |||||||||||||||||   |||||||  
seq2  CATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGCTTTCTCAGAGT  200

seq1  GCCTTTGTCAGTAAAGCATTTGTCACACTCACTGCATTTGTAAGGTTTCT  250
      || ||||||||||||||||||||| || ||||| ||||||||||||||||
seq2  GCATTTGTCAGTAAAGCATTTGTCGCATTCACTACATTTGTAAGGTTTCT  250

seq1  CTCCCGTATGAATTCTCTGATGCTTTCTCAGAGTGCATTTGTCAGTAAAG  300
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTATGAATTCTCTGATGCTTTCTCAGAGTGCATTTGTCAGTAAAG  300

seq1  CATTTGTCGCATTCACTACATTTGTAAGGTTTCTCTCCTGAATGAATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTCGCATTCACTACATTTGTAAGGTTTCTCTCCTGAATGAATTGT  350

seq1  ATGATGAATACTAAGATGGGAAGGTTGGGTAAAGCATTTGTCACTTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAATACTAAGATGGGAAGGTTGGGTAAAGCATTTGTCACTTTCAC  400

seq1  TATATTTGTAAGATTTCTTTCCTGGCT---TTCTCTGCTGACTTTGAAGA  447
      ||||| ||||||||||||||||||| |   ||||||||||||||||||||
seq2  TATATATGTAAGATTTCTTTCCTGGATAAATTCTCTGCTGACTTTGAAGA  450

seq1  CTGTCACTCTGAGTAAAGCATTTGTCAAATTCACCACAAGTGTAAGTGTT  497
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACTCTGAGTAAAGCATTTGTCAAATTCACCACAAGTGTAAGTGTT  500

seq1  CATTTCACTATTGTTTTGTCTCACAATGGGTTTATGTTTAGAAACCAAAA  547
      ||||||||||||||||||||                  ||||||||||||
seq2  CATTTCACTATTGTTTTGTC------------------TAGAAACCAAAA  532

seq1  CCTCATCAAGATTTTTATTTCTGTTGTGTTCTTTCTTCTCTATGTGGGTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCAAGATTTTTATTTCTGTTGTGTTCTTTCTTCTCTATGTGGGTT  582

seq1  CCTTGATTGAGACTAATGATAGAAGACCCCTTTAAACAGTTTACACAGTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATTGAGACTAATGATAGAAGACCCCTTTAAACAGTTTACACAGTC  632

seq1  TTTATATGTGCAAACTTCTTTAGTGGTCCCAGTTTTATGTCTTTTTAGGT  697
      |||||||||||||||| ||||||||||||||| |||||||||||||| ||
seq2  TTTATATGTGCAAACTCCTTTAGTGGTCCCAG-TTTATGTCTTTTTA-GT  680

seq1  TTGAGAATTGGAATGTGGCATCTCTTTGGTTAGTGTTATAAGGTGTACTT  747
      ||||| ||||||  ||||||||||| ||| ||||||||||| |||||| |
seq2  TTGAGGATTGGAGAGTGGCATCTCTGTGG-TAGTGTTATAA-GTGTAC-T  727

seq1  TCGGAGGATTCATGAATCA-CATTACTAAGCTCATTACATTTAGAAGACT  796
      |||||||||||||| |||| |||| |||| |||||||||||||| |||| 
seq2  TCGGAGGATTCATGGATCACCATTTCTAACCTCATTACATTTAG-AGAC-  775

seq1  TCTTTCGGATATGCCCATGCTCATTGACAATGTGCTG  833
      |||||||| || | |||||||||||||| ||||||||
seq2  TCTTTCGG-TAAGGCCATGCTCATTGAC-ATGTGCTG  810

seq1: chr4_145039299_145040011
seq2: B6Ng01-042D07.g_68_779

seq1  GAATCCCTTACTCCTTATATAAGTAAATCATGTCACCTCTAATTGCCCCC  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTACTCCTTATATAAGTAAATCATGTCACCTCTAATTGCCCCC  50

seq1  CACCCGTTTTTTTTTTTTCAGGAAATCATTGCATATATGGAATGTATGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCGTTTTTTTTTTTTCAGGAAATCATTGCATATATGGAATGTATGGG  100

seq1  AAGGTCATGGATCAAGACAGCCAGTACATTGTTCTTGAACACATGAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCATGGATCAAGACAGCCAGTACATTGTTCTTGAACACATGAATAT  150

seq1  TCAAGAGAAGTCTTCTAAATGTAACAAGCCTAGCAATGTGTTTCTAGAAT  200
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCAAGAGAAGTCTTCTAAATGTAACAAGCTTAGCAATGTGTTTCTAGAAT  200

seq1  CCCCCCATTATACACCTCACAAATGTACTGAATGTGACAAATGCTTTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCATTATACACCTCACAAATGTACTGAATGTGACAAATGCTTTTCC  250

seq1  CAAAAATCTCATCTTAATATTCATCAGAAAATTCATGCAGGAGAGAAACC  300
      | ||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  CCAAAATCTCATCTTAATAATCATCAGAAACTTCATGCAGGAGAGAAACC  300

seq1  TTACAAATGCAGTGGATGTGACAAATGCTTTACTGAAAAAGGCAGTCTGA  350
      |||||||||||||||||||||||| ||||||||||||||||||| |||||
seq2  TTACAAATGCAGTGGATGTGACAAGTGCTTTACTGAAAAAGGCACTCTGA  350

seq1  GAAGGCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAA  400
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAAGGCATCAGAGAATTCATACAGGAGAAAAACCTTACAAATGCAGTGAA  400

seq1  TGTGACAAATGCTTTACTAGAAAAGGCACTCTGAGAATTCATCAGAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAAATGCTTTACTAGAAAAGGCACTCTGAGAATTCATCAGAGAAT  450

seq1  TCATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTA  500

seq1  CCCAAAAATTTAATTTGAGATCTCATCAGAGAATTCATACAGGAGAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAAATTTAATTTGAGATCTCATCAGAGAATTCATACAGGAGAGAAA  550

seq1  CCTTACAAATGCAGTGAATGTGACAATTGCTTTACTGAAAAAGGCAATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACAAATGCAGTGAATGTGACAATTGCTTTACTGAAAAAGGCAATCT  600

seq1  GAGAAGGCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGTAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGTAGTG  650

seq1  AATGTGACAAATTCTTTACCCGAAAATCCCATCTTAGTATTCATCAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AATGTGACAAATTCTTTACCCGAAAATCCCATCTTAGTATTCATCAG-AA  699

seq1  TTTCATACAGGAG  713
      |||||||||||||
seq2  TTTCATACAGGAG  712