BAC Information

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BAC

Clone NameB6Ng01-042F22
Chromosome4 (Build37)
Map Location 62,941,546 - 62,968,090
singlet/doubletdoublet
Overlap geneCol27a1
Upstream geneSlc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3, Zfp618, Ambp, Kif12
Downstream geneOrm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps, Tnc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042F22.bB6Ng01-042F22.g
ACCDH868769DH868770
length1,1541,142
definitionDH868769|Mus musculus domesticus DNA, BAC clone: B6Ng01-042F22, 5' end.DH868770|Mus musculus domesticus DNA, BAC clone: B6Ng01-042F22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,966,923 - 62,968,090)(62,941,546 - 62,942,704)
sequence
gaattcaagcatcaacggacgtgactcatagagggcacagcatcgatcga
tcgtacctggcagccttgggactagttccccctgagtgctggcttatgaa
cccctggtgatggtcagaacttttcatctttaagggcgttatgaaagaga
ggatatgaaagccccaggtagagcaagggcagccttgaaaccctgctgat
tcctccacccccaccccacctcccttcctctgccggggagaagctgctaa
ttcagtgttctgagggaactagagcagggctagaggccattcccagatcc
tggcccagacaactcaccttcagcccatctggccccacagggccatggtc
tccctcaaggcctggctctccctgggagaaaaagatggggaggtattact
gggtagcagcgcaaggggcgttccctccccacttgccagggtcaggaacc
cactggctctcagaagctgaacaagtggatttctatggggcagaagaagg
gccacagagccttatggaccaggtacctgctgttggactggggaagccag
ttggtaagaatggtttctgacaatgccaacctcagcatcagcagtgtttc
tgcaacctcaagtaggatcttagtttctataggaatccctttcttacctg
gaaaacatggctctcagggaaggggatgacacactcaagggtgtcagcca
ccttgggcctccttctgagagctgaaataagtgttcctggaacctcatct
cacatgaggaatgtaaggacaattggtagacttgggtgggtaagttctag
aaagatgctaagaatgccaaggccctctttgatgtccctgctggtcctcc
ccgtgctggaaaagccccagttctccaaacagctgccaacctaaattggt
atctccctctggttttagatttagagctgtccagagcagagctaggaggg
gacccaggttggcaatgcaggaatggcaaagatatggcaagtgagcagat
gctgctctctgtactcatggcagacatcatatcatccaccagacatcagt
tccctaagacaggtcttctgtactccctctatgctccatgctagtacact
gggtgtgtaaaggaatacctatcttgctttcgaacttattgagttagatg
gggc
tctgataggaggagccatgctacaggacattagcacttacctctgcacaa
ccaatgtggcgagtcatggctcaaaggatgaatgtggctcacgggtaagg
cttttcaggcagggcagctgactcagggctcagtgtccccagaacgtggg
actctgtcctctgacacggatgaccatgtgtgacagcctaatgtgtttct
atatctctgttctcccacctctctctcaacaagtctcaagcaggaaagct
gtctttgaacttgatatgtgactaaagatgacctataactctttactgtc
ctgtctctgcctcctcctcacaatgctaagattaaagacaccaaggatca
ccacactcagtgcattctgcattttctcagccactctgaaaagtcaggct
tggggcctgcagagaaaggggatcaagtagctgacctaccccaggtcaca
caagagtagtggtaggggtgaacaccagtggggtgggggcttgttctgag
cacctgccaaccagaggcccaggtgacctggctttctgctttcccatagg
gtttcccaggagacattggccctccaggggacaatggccctgaaggcatg
aaggtgagttctctcccacctaaggtccttggctgaagaagccccagggc
ccaaggtggctgcaccatctggtgtcctgtcaacctgatgtggaggtact
acctctgagaccatttctgttctctttcccagggtaagcctggagcccga
ggcctgcctggacctcctgggcagctggggcctgaggtaagatagccctg
tcccctcctgtccctctttgtcttctctagcctatcccagcacctagctg
gctctgtccagggtaccaaagccatgattgagggcaggaccacttgagat
tcatcaccagagaatctatctgttctcttacaccctgcctgtgactcttc
tctgacctggtggggcaagcgactttcttccacacatagcacagtatcag
tctcaaatgagagatagaatgttggaccctttcataagtggagatccagg
gaagaaatgactgccagcccgtgtagcaagcagactttacaaaagcctaa
tgtttcatcagccaggtctagtctagatctgtgctagtctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_62966923_62968090
seq2: B6Ng01-042F22.b_46_1199 (reverse)

seq1  GCCCCATCTAGACTCAATAAGTTCGAGAGGCAGATGAGTATTCCTTTAAC  50
      |||||||||| ||||||||||||||| ||  ||||  |||||||||| ||
seq2  GCCCCATCTA-ACTCAATAAGTTCGAAAGCAAGATAGGTATTCCTTT-AC  48

seq1  ACACACAGTGTACTAGGCATGGGAGCATAGAGTGAGTAACAGAAGACCTG  100
      |||| |||||||||| |||| ||||||||||| |||| ||||||||||||
seq2  ACACCCAGTGTACTA-GCAT-GGAGCATAGAGGGAGT-ACAGAAGACCTG  95

seq1  TCTAAGGGAACTGATGTTCTGGTGGATTGATTATTGATGTCTGCCATGGG  150
      ||| |||||||||||| ||||||||| ||||   |||||||||||||| |
seq2  TCTTAGGGAACTGATG-TCTGGTGGA-TGAT--ATGATGTCTGCCATGAG  141

seq1  TACAAGAGGAGCAGCATCTGCTCACTTGCCATATCTTTGCCATTCCTGCA  200
      ||| ||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAC-AGA-GAGCAGCATCTGCTCACTTGCCATATCTTTGCCATTCCTGCA  189

seq1  TTTGCCAACCTGGGTCCCCTCCTAGCTCTGCCTCTGGACAGCTCTAAATT  250
       ||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  -TTGCCAACCTGGGTCCCCTCCTAGCTCTG-CTCTGGACAGCTCTAAA-T  236

seq1  CTAAAACCAGAGGGAGATACCAATTTAGGTTGGCAGCTGTTTGGAGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACCAGAGGGAGATACCAATTTAGGTTGGCAGCTGTTTGGAGAACT  286

seq1  GGGGCTTTTCCAGCACGGGGAGGACCAGCAGGGACATCAAAGAGGGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTTTCCAGCACGGGGAGGACCAGCAGGGACATCAAAGAGGGCCTT  336

seq1  GGCATTCTTAGCATCTTTCTAGAACTTACCCACCCAAGTCTACCAATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTCTTAGCATCTTTCTAGAACTTACCCACCCAAGTCTACCAATTGT  386

seq1  CCTTACATTCCTCATGTGAGATGAGGTTCCAGGAACACTTATTTCAGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACATTCCTCATGTGAGATGAGGTTCCAGGAACACTTATTTCAGCTC  436

seq1  TCAGAAGGAGGCCCAAGGTGGCTGACACCCTTGAGTGTGTCATCCCCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGGAGGCCCAAGGTGGCTGACACCCTTGAGTGTGTCATCCCCTTC  486

seq1  CCTGAGAGCCATGTTTTCCAGGTAAGAAAGGGATTCCTATAGAAACTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAGCCATGTTTTCCAGGTAAGAAAGGGATTCCTATAGAAACTAAG  536

seq1  ATCCTACTTGAGGTTGCAGAAACACTGCTGATGCTGAGGTTGGCATTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTACTTGAGGTTGCAGAAACACTGCTGATGCTGAGGTTGGCATTGTC  586

seq1  AGAAACCATTCTTACCAACTGGCTTCCCCAGTCCAACAGCAGGTACCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCATTCTTACCAACTGGCTTCCCCAGTCCAACAGCAGGTACCTGG  636

seq1  TCCATAAGGCTCTGTGGCCCTTCTTCTGCCCCATAGAAATCCACTTGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAGGCTCTGTGGCCCTTCTTCTGCCCCATAGAAATCCACTTGTTC  686

seq1  AGCTTCTGAGAGCCAGTGGGTTCCTGACCCTGGCAAGTGGGGAGGGAACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTGAGAGCCAGTGGGTTCCTGACCCTGGCAAGTGGGGAGGGAACG  736

seq1  CCCCTTGCGCTGCTACCCAGTAATACCTCCCCATCTTTTTCTCCCAGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGCGCTGCTACCCAGTAATACCTCCCCATCTTTTTCTCCCAGGGA  786

seq1  GAGCCAGGCCTTGAGGGAGACCATGGCCCTGTGGGGCCAGATGGGCTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGGCCTTGAGGGAGACCATGGCCCTGTGGGGCCAGATGGGCTGAA  836

seq1  GGTGAGTTGTCTGGGCCAGGATCTGGGAATGGCCTCTAGCCCTGCTCTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTTGTCTGGGCCAGGATCTGGGAATGGCCTCTAGCCCTGCTCTAG  886

seq1  TTCCCTCAGAACACTGAATTAGCAGCTTCTCCCCGGCAGAGGAAGGGAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCAGAACACTGAATTAGCAGCTTCTCCCCGGCAGAGGAAGGGAGG  936

seq1  TGGGGTGGGGGTGGAGGAATCAGCAGGGTTTCAAGGCTGCCCTTGCTCTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGGGGGTGGAGGAATCAGCAGGGTTTCAAGGCTGCCCTTGCTCTA  986

seq1  CCTGGGGCTTTCATATCCTCTCTTTCATAACGCCCTTAAAGATGAAAAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGCTTTCATATCCTCTCTTTCATAACGCCCTTAAAGATGAAAAGT  1036

seq1  TCTGACCATCACCAGGGGTTCATAAGCCAGCACTCAGGGGGAACTAGTCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCATCACCAGGGGTTCATAAGCCAGCACTCAGGGGGAACTAGTCC  1086

seq1  CAAGGCTGCCAGGTACGATCGATCGATGCTGTGCCCTCTATGAGTCACGT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTGCCAGGTACGATCGATCGATGCTGTGCCCTCTATGAGTCACGT  1136

seq1  CCGTTGATGCTTGAATTC  1168
      ||||||||||||||||||
seq2  CCGTTGATGCTTGAATTC  1154

seq1: chr4_62941546_62942704
seq2: B6Ng01-042F22.g_76_1217

seq1  TCTGATAGGAGGAGCCATGCTACAGGACATTAGCACTTACCTCTGCACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATAGGAGGAGCCATGCTACAGGACATTAGCACTTACCTCTGCACAA  50

seq1  CCAATGTGGCGAGTCATGGCTCAAAGGATGAATGTGGCTCACGGGTAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTGGCGAGTCATGGCTCAAAGGATGAATGTGGCTCACGGGTAAGG  100

seq1  CTTTTCAGGCAGGGCAGCTGACTCAGGGCTCAGTGTCCCCAGAACGTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAGGCAGGGCAGCTGACTCAGGGCTCAGTGTCCCCAGAACGTGGG  150

seq1  ACTCTGTCCTCTGACACGGATGACCATGTGTGACAGCCTAATGTGTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTCCTCTGACACGGATGACCATGTGTGACAGCCTAATGTGTTTCT  200

seq1  ATATCTCTGTTCTCCCACCTCTCTCTCAACAAGTCTCAAGCAGGAAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCTGTTCTCCCACCTCTCTCTCAACAAGTCTCAAGCAGGAAAGCT  250

seq1  GTCTTTGAACTTGATATGTGACTAAAGATGACCTATAACTCTTTACTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGAACTTGATATGTGACTAAAGATGACCTATAACTCTTTACTGTC  300

seq1  CTGTCTCTGCCTCCTCCTCACAATGCTAAGATTAAAGACACCAAGGATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTGCCTCCTCCTCACAATGCTAAGATTAAAGACACCAAGGATCA  350

seq1  CCACACTCAGTGCATTCTGCATTTTCTCAGCCACTCTGAAAAGTCAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTCAGTGCATTCTGCATTTTCTCAGCCACTCTGAAAAGTCAGGCT  400

seq1  TGGGGCCTGCAGAGAAAGGGGATCAAGTAGCTGACCTACCCCAGGTCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCTGCAGAGAAAGGGGATCAAGTAGCTGACCTACCCCAGGTCACA  450

seq1  CAAGAGTAGTGGTAGGGGTGAACACCAGTGGGGTGGGGGCTTGTTCTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTAGTGGTAGGGGTGAACACCAGTGGGGTGGGGGCTTGTTCTGAG  500

seq1  CACCTGCCAACCAGAGGCCCAGGTGACCTGGCTTTCTGCTTTCCCATAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCCAACCAGAGGCCCAGGTGACCTGGCTTTCTGCTTTCCCATAGG  550

seq1  GTTTCCCAGGAGACATTGGCCCTCCAGGGGACAATGGCCCTGAAGGCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCAGGAGACATTGGCCCTCCAGGGGACAATGGCCCTGAAGGCATG  600

seq1  AAGGTGAGTTCTCTCCCACCTAAGGTCCTTGGCTGAAGAAGCCCCAGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAGTTCTCTCCCACCTAAGGTCCTTGGCTGAAGAAGCCCCAGGGC  650

seq1  CCAAGGTGGCTGCACCATCTGGTGTCCTGTCAACCTGATGTGGAGGTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTGGCTGCACCATCTGGTGTCCTGTCAACCTGATGTGGAGGTACT  700

seq1  ACCTCTGAGACCATTTCTGTTCTCTTTCCCAGGGTAAGCCTGGAGCCCGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGAGACCATTTCTGTTCTCTTTCCCAGGGTAAGCCTGGAGCCCGA  750

seq1  GGCCTGCCTGGACCTCCTGGGCAGCTGGGGCCTGAGGTAAGATAGCCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCCTGGACCTCCTGGGCAGCTGGGGCCTGAGGTAAGATAGCCCTG  800

seq1  TCCCCTCCTGTCCCTCTTTGTCTTCTCTAGCCTATCCCAGCACCTAGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCTGTCCCTCTTTGTCTTCTCTAGCCTATCCCAGCACCTAGCTG  850

seq1  GCTCTGTCCAGGGTACCAAAGCCATGATTGAGGGCAGGACCACTTGAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTCCAGGGTACCAAAGCCATGATTGAGGGCAGGACCACTTGAGAT  900

seq1  TCATCACCAGAGAATCTATCTGTTCTCTTACAACCCTGCCTGTGACTCTT  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCATCACCAGAGAATCTATCTGTTCTCTTAC-ACCCTGCCTGTGACTCTT  949

seq1  CTCTGACCTGGTGGGGCAAGCGACTTTCCTTCCACACATAGCACAGTATC  1000
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTCTGACCTGGTGGGGCAAGCGACTTT-CTTCCACACATAGCACAGTATC  998

seq1  AGTCTCAAAATGAGAGGATAGGAAATGTTGGACCCCTTTCATAAGTGGAG  1050
      |||||| |||||||| |||||  ||||||||| |||||||||||||||||
seq2  AGTCTC-AAATGAGA-GATAG--AATGTTGGA-CCCTTTCATAAGTGGAG  1043

seq1  ATCCAGGGAAGGAAATGACTGCCAGGCCCCGTGTTAGCAGGCAGGACCTT  1100
      |||||||||| ||||||||||||||  |||||| ||||| ||||   |||
seq2  ATCCAGGGAA-GAAATGACTGCCAG--CCCGTG-TAGCAAGCAG--ACTT  1087

seq1  TACTAGAGCCTAGATG-TTCATCAGCCCGGAGTCTATGCTCAGATCCTGT  1149
      ||| | |||||| ||| |||||||||| |  |||||  || |||| ||||
seq2  TACAAAAGCCTA-ATGTTTCATCAGCCAG--GTCTAGTCT-AGAT-CTGT  1132

seq1  GCTAGTCTCA  1159
      ||||||||||
seq2  GCTAGTCTCA  1142