BAC Information

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BAC

Clone NameB6Ng01-042I13
Chromosome4 (Build37)5 (Build37)
Map Location 13,195,793 - 13,196,74714,180,096 - 14,180,476
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneOTTMUSG00000004461
Downstream geneLOC100039988, Runx1t1, LOC625831, LOC433687, LOC100040030
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042I13.bB6Ng01-042I13.g
ACCDH868884DH868885
length958988
definitionDH868884|Mus musculus domesticus DNA, BAC clone: B6Ng01-042I13, 5' end.DH868885|Mus musculus domesticus DNA, BAC clone: B6Ng01-042I13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(13,195,793 - 13,196,747)(14,180,096 - 14,180,476)
sequence
gaattcaaagcaggacattacttcctgcagaattggtggagagttggcct
taatctcactcctttacccaaatgagattactatagatttatggtcctga
atcctgcaagccatgtgaaacccatgtctccacactccaggataaagaaa
ttttacatcctaaagaattggctaagcatattccaaagatgatgcttgtc
aactggactgtttgtgaatgttggttggtaaagatcatgtctgtctgttg
gactgtttgtaacgttggttggtttgtttgttttgctgtgtttccattac
ttctggttatttggaattggcagtttttatgagacatttgagattcaatt
gttctggatgggcctggtgctgttcttgtgaactaatccactaatgaata
aaagagccaatcactgggctagtaggcgggacttccgggttggatggagg
aagagaggaagcaggagccagtcaggtctctttttggacagcttgagggt
aagatgtaactgctagagtttcccagtatcacggcagatccgaaaggatt
caccaccgaaggaatcagattttttttttattagatattttcgggttttt
gttttgttttgttttgttttgtttttgttttttgagacagggtttctctg
tgtagccctggctgtcctggaactcactctgtagaccaggctggcctcga
actcagagatccacttgcctctgcctcccaagtgctgggattaaaggcgt
gcgccatcatgctagctagatagtttctttatttacattttaaatgctat
cccgaaagttccctataccctccccacgccctgctcccctacccacccac
tcccacttcttggctctggcattccctgtactggggttataaagtttgca
agacctgggggctttctttccaatgatggccgactaggccttctttgttc
tctgctac
gaattcacacacttctcacttcctcgatagaacaagaatatgagattgtt
tctcagttgatctgtctttgtatatcacctgtgttttgtaggaggcactg
gttgctggctagactgcagtcacataccttcacccagggctgtgagtaaa
gtcagctttactggatcagcagagcctagcgtggggaaagcactgtgtct
tcatggggaaacacggtgctctcgtgttttaaaaagcaagggatgagaat
taagaagaaaaataccagcagcaaatgtccattcactttgggcaaattat
ccatttcttgttcctgtttcttcatttttaaagttgggatagaagccaca
gcagcagcggtcgccatcttggtccgggacctgccgaacttaggaaatta
gtctgaacaggtgagagggtgcgccagagaacctgacagcctctggaaca
ggcagaagcacagaggggctgaggcagcaccctgtgtgggccggggacag
ccggccaccttccggaccagaggacaggtgcccgcccggctggggaggcg
gcctaagccacagcagcagcggtcgccatcttggtccgggacccgccgaa
cttaggaaattagtctgaacaggtgagagggtgcgccagagaacctgaca
gcttctggaacaggcggaagcacagaggcgctgaggcagcaccctgcgtg
ggccggggacagccggccaccttccggaccagaggacaggtgcccacccg
gctggggaggcggcctaagccacagcagcagcggtcgccatcttggtccg
gacccgccgaacttaggaaattagtctgaacaggtgagagggtgctccag
agaacctgacagcttctggaacaggcggaagcacagaggcactgaggcag
caccctttgtgggccggggacagccagccaccgtctggaccggagacagg
tgcccacccggctgggagcgtctaagccacagcagcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_13195793_13196747
seq2: B6Ng01-042I13.b_43_1000

seq1  GAATTCAAAGCAGGACATTACTTCCTGCAGAATTGGTGGAGAGTTGGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCAGGACATTACTTCCTGCAGAATTGGTGGAGAGTTGGCCT  50

seq1  TAATCTCACTCCTTTACCCAAATGAGATTACTATAGATTTATGGTCCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCACTCCTTTACCCAAATGAGATTACTATAGATTTATGGTCCTGA  100

seq1  ATCCTGCAAGCCATGTGAAACCCATGTCTCCACACTCCAGGATAAAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGCAAGCCATGTGAAACCCATGTCTCCACACTCCAGGATAAAGAAA  150

seq1  TTTTACATCCTAAAGAATTGGCTAAGCATATTCCAAAGATGATGCTTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACATCCTAAAGAATTGGCTAAGCATATTCCAAAGATGATGCTTGTC  200

seq1  AACTGGACTGTTTGTGAATGTTGGTTGGTAAAGATCATGTCTGTCTGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGACTGTTTGTGAATGTTGGTTGGTAAAGATCATGTCTGTCTGTTG  250

seq1  GACTGTTTGTAACGTTGGTTGGTTTGTTTGTTTTGCTGTGTTTCCATTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTTGTAACGTTGGTTGGTTTGTTTGTTTTGCTGTGTTTCCATTAC  300

seq1  TTCTGGTTATTTGGAATTGGCAGTTTTTATGAGACATTTGAGATTCAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTTATTTGGAATTGGCAGTTTTTATGAGACATTTGAGATTCAATT  350

seq1  GTTCTGGATGGGCCTGGTGCTGTTCTTGTGAACTAATCCACTAATGAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGATGGGCCTGGTGCTGTTCTTGTGAACTAATCCACTAATGAATA  400

seq1  AAAGAGCCAATCACTGGGCTAGTAGGCGGGACTTCCGGGTTGGATGGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCCAATCACTGGGCTAGTAGGCGGGACTTCCGGGTTGGATGGAGG  450

seq1  AAGAGAGGAAGCAGGAGCCAGTCAGGTCTCTTTTTGGACAGCTTGAGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGAAGCAGGAGCCAGTCAGGTCTCTTTTTGGACAGCTTGAGGGT  500

seq1  AAGATGTAACTGCTAGAGTTTCCCAGTATCACGGCAGATCCGAAAGGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTAACTGCTAGAGTTTCCCAGTATCACGGCAGATCCGAAAGGATT  550

seq1  CACCACCGAAGGAATCAGATTTTTTTTTTATTAGATATTTTCGGGTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCGAAGGAATCAGATTTTTTTTTTATTAGATATTTTCGGGTTTTT  600

seq1  GTTTTGTTTTGTTTTGTTTTGTTTTTGTTTTTTGAGACAGGGTTTCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGTTTTGTTTTGTTTTTGTTTTTTGAGACAGGGTTTCTCTG  650

seq1  TGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGA  700

seq1  ACTCAGAGATCCACTTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGATCCACTTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGT  750

seq1  GCGCCATCATGCTAGCTAGATAGTTTCTTTATTTACATTTTAAATGCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCATCATGCTAGCTAGATAGTTTCTTTATTTACATTTTAAATGCTAT  800

seq1  CCCGAAAGTTCCCTATACCCTCCCCACGCCCTGCTCCCCTACCCACCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAAAGTTCCCTATACCCTCCCCACGCCCTGCTCCCCTACCCACCCAC  850

seq1  CCCCACTTCTTGGCTCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTG  900
       |||||||||||||||||||||| |||||||||||||  |||||||||||
seq2  TCCCACTTCTTGGCTCTGGCATT-CCCTGTACTGGGG-TTATAAAGTTTG  898

seq1  CAAGACCTAGGGGGCTTTCTTCCCAATGATGGCCGACTAGGCCATCT---  947
      |||||||| |||||||||||| ||||||||||||||||||||| |||   
seq2  CAAGACCT-GGGGGCTTTCTTTCCAATGATGGCCGACTAGGCCTTCTTTG  947

seq1  ---TCTGCTAC  955
         ||||||||
seq2  TTCTCTGCTAC  958

seq1: chr5_14180096_14180476
seq2: B6Ng01-042I13.g_486_858 (reverse)

seq1  GATGGCGACCGCTGCTGCTGTGGCTTAGGCCGCCTCCCCAGCCGGGCGGG  50
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GATGGCGACCGCTGCTGCTGTGGCTTAGGCCGCCTCCCCAGCCGGGTGGG  50

seq1  CACCTGTCCTCCGGTCCGGAAGGTGGCCGGCTGTCCCCGGCCCACGCAGG  100
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTCCTCTGGTCCGGAAGGTGGCCGGCTGTCCCCGGCCCACGCAGG  100

seq1  GTGCTGCCTCAGCGCCTCTTCGCCTCTGTGCTTCCGCCTGTTCCAGAAGC  150
      ||||||||||||        ||||||||||||||||||||||||||||||
seq2  GTGCTGCCTCAG--------CGCCTCTGTGCTTCCGCCTGTTCCAGAAGC  142

seq1  TGTCAGGTTCTCTGGCGCACCCTCTCACCTGTTCAGACTAATTTCCTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGTTCTCTGGCGCACCCTCTCACCTGTTCAGACTAATTTCCTAAG  192

seq1  TTCGGCGGGTCCCGGACCAAGATGGCGACCGCTGCTGCTGTGGCTTAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGCGGGTCCCGGACCAAGATGGCGACCGCTGCTGCTGTGGCTTAGGC  242

seq1  CGCCTCCCCAGCCGGGCGGGCACCTGTCCTCCGGTCCGGAAGGTGGCCGG  300
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CGCCTCCCCAGCCGGGCGGGCACCTGTCCTCTGGTCCGGAAGGTGGCCGG  292

seq1  CTGTCCCCGGCCCACACAGGGTGCTGCCTCAGCCCCTCTGTGCTTCTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCCGGCCCACACAGGGTGCTGCCTCAGCCCCTCTGTGCTTCTGCC  342

seq1  TGTTCCAGAGGCTGTCAGGTTCTCTGGCGCA  381
      |||||||||||||||||||||||||||||||
seq2  TGTTCCAGAGGCTGTCAGGTTCTCTGGCGCA  373