BAC Information

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BAC

Clone NameB6Ng01-042I14
Chromosome4 (Build37)4 (Build37)
Map Location 94,853,401 - 94,853,748134,535,112 - 134,536,324
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun
Downstream geneLOC100042411, 2310009E04Rik, Hook1, Cyp2j13, LOC242546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042I14.bB6Ng01-042I14.g
ACCDH868886DH868887
length7311,193
definitionDH868886|Mus musculus domesticus DNA, BAC clone: B6Ng01-042I14, 5' end.DH868887|Mus musculus domesticus DNA, BAC clone: B6Ng01-042I14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(94,853,401 - 94,853,748)(134,535,112 - 134,536,324)
sequence
gaattctcattcaggcaattaaggccaacaactgacaaacaggacctcgt
gggatgaaagatcgaaaggctccatagagcaaaaggagcgagtcatacag
gcaacggcttacagaatggggagaactggtttgcttgctctgtacctgac
aaattagtatctagaatatacgaacaacaacaacattatcaacaacaaaa
tgagcagacaattctccaaagatgaaatgcaaatgggcaatagatgtttg
aaaaacgagcgtccccagagtaagacaatcaaaacccacactgcatgcaa
acccccctccacaggcattaagaaaagcagcaaactctggcctggcgagg
cacgagggagcctttctgtacttctggtaagaagctgatcttgctaccgt
gcaagtcagttagagggtcttcaagaaactagaaatagctgggtgtggtg
gctcacacctttacttctgggattatggaggcagaagcgggcagatatct
ttagtttgaagccagccttgtctacatagcaagttccaggtcagccatga
ctacgtagtgagattcccgtctcaaacaacaaacaaacaagccaccctac
aaatagaatttccacactgtccagttatactactcctgggcagtcactca
aaggaaccccagcgcagccatagaggacaaaggaaagtgtgtgtgtgcat
gtgtgtgtatgtgtgtgtatgtgtgtgtgtg
gaattcttggctaggtatttttgagaccacccacctagaatgaattgagg
cttcaagctctcttattagggttggcttcccctacaaactctaaggaggg
agtttcgctctgttcttgccaaggttccataggtgcaattttctgggtcg
ccctctccagggagcagagagcagaccagggagctttgttccccccccca
ccccctgccacctagcatccggtgagccactctgggaacttagctttttg
cagagagggtttctaccaaaaccctcgccctgggtgggctccgtgctttg
tgtctggtctctcctctgtggtttctgagtacatgaagcctcctccaacc
ccagccttccattggctcttggtcctgaatgtgccttctgtctctgagag
tgtagccaagcagttgaacgagtatgtgtctagctgatccctttgtttgg
tggaggtcaaaaggcctagagagtgtcagtgccatgtctctggcaagcgc
gggccctgcagttctgcctcctagccattcctcaggaaaactggtggagt
tggcttccgggtgtttccctcttaacttgtttcgggacgtgctaatagtg
aatatggcaatcacagctctggattttcactttgggctagcatgcttatt
tactcattcgtttgttcattggtccatccattcatccatccatccatcca
tccatctatccgtccattcacttttattttattgagcttcctgtctgaag
gccagatcctacagtttagaatggactcagtggtctcacctcccgctgcc
ctcctgatgccctcaggctaacgagaggctaagcactttttagaagttat
ttaatttaatccttataatgaccatagcagttctgtctggctgattgata
cattaggaaaggaaggtaccgaatggttatgtaagtacctgaggctaaga
taccttggaagagctgggccgggactttaacctaatctgcctggctacca
caagtctttgctcctctctgactcggtccctctgtctgtttcgtccctgt
ctcgttctgtctcttttcttctcacaacacaacaaataacactctcacgt
aaacacagtctacatgcaccaagttgttggtcttgaacttttaacccctg
aggtttggcactgtggattcctcaccgctttgcaagagagaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_94853401_94853748
seq2: B6Ng01-042I14.b_723_774 (reverse)

seq1  CACACACACACATACACACACACACCAGCTATCCAGCAGGCATATGTAGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AAGTGCAGCTGTCCACCGGGTCCTGAATATATACTGTGTATGTCTGTTAT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GAGGCACGAGAGAGTGGACACAGCTTCTCAAAGTGTCGTCTTGGGAGCAC  150
                                                        
seq2  --------------------------------------------------  0

seq1  AACAGATCAAGGAGCCCCAGGGAACTTCTGAGATTATTATTACTGAATAG  200
                                                        
seq2  --------------------------------------------------  0

seq1  AAATGGAAAGAAGTTCCAACTTGTGTTTCTGTCCCTCTTGGTAGCTGTCA  250
                                                        
seq2  --------------------------------------------------  0

seq1  TGTGTAACTTTATGTACCTTTTCCATAATGACTGCTTTTCAAGCCGTCCA  300
                                                      ||
seq2  ------------------------------------------------CA  2

seq1  CTGTGA-AGGAAGGTAGGCCTACACACACATGCACACACACA-TTTCCTT  348
      |    | |   |   |  | |||||||||||||||||||||| |||||||
seq2  CACACACACATACACACACATACACACACATGCACACACACACTTTCCTT  52

seq1: chr4_134535112_134536324
seq2: B6Ng01-042I14.g_69_1261

seq1  GAATTCTTGGCTAGGTATTTTTGAGACCACCCACCTAGAATGAATTGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGCTAGGTATTTTTGAGACCACCCACCTAGAATGAATTGAGG  50

seq1  CTTCAAGCTCTCTTATTAGGGTTGGCTTCCCCTACAAACTCTAAGGAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGCTCTCTTATTAGGGTTGGCTTCCCCTACAAACTCTAAGGAGGG  100

seq1  AGTTTCGCTCTGTTCTTGCCAAGGTTCCATAGGTGCAATTTTCTGGGTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCGCTCTGTTCTTGCCAAGGTTCCATAGGTGCAATTTTCTGGGTCG  150

seq1  CCCTCTCCAGGGAGCAGAGAGCAGACCAGGGAGCTTTGTTCCCCCCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCCAGGGAGCAGAGAGCAGACCAGGGAGCTTTGTTCCCCCCCCCA  200

seq1  CCCCCTGCCACCTAGCATCCGGTGAGCCACTCTGGGAACTTAGCTTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGCCACCTAGCATCCGGTGAGCCACTCTGGGAACTTAGCTTTTTG  250

seq1  CAGAGAGGGTTTCTACCAAAACCCTCGCCCTGGGTGGGCTCCGTGCTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGGTTTCTACCAAAACCCTCGCCCTGGGTGGGCTCCGTGCTTTG  300

seq1  TGTCTGGTCTCTCCTCTGTGGTTTCTGAGTACATGAAGCCTCCTCCAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGTCTCTCCTCTGTGGTTTCTGAGTACATGAAGCCTCCTCCAACC  350

seq1  CCAGCCTTCCATTGGCTCTTGGTCCTGAATGTGCCTTCTGTCTCTGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTTCCATTGGCTCTTGGTCCTGAATGTGCCTTCTGTCTCTGAGAG  400

seq1  TGTAGCCAAGCAGTTGAACGAGTATGTGTCTAGCTGATCCCTTTGTTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCAAGCAGTTGAACGAGTATGTGTCTAGCTGATCCCTTTGTTTGG  450

seq1  TGGAGGTCAAAAGGCCTAGAGAGTGTCAGTGCCATGTCTCTGGCAAGCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTCAAAAGGCCTAGAGAGTGTCAGTGCCATGTCTCTGGCAAGCGC  500

seq1  GGGCCCTGCAGTTCTGCCTCCTAGCCATTCCTCAGGAAAACTGGTGGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTGCAGTTCTGCCTCCTAGCCATTCCTCAGGAAAACTGGTGGAGT  550

seq1  TGGCTTCCGGGTGTTTCCCTCTTAACTTGTTTCGGGACGTGCTAATAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCCGGGTGTTTCCCTCTTAACTTGTTTCGGGACGTGCTAATAGTG  600

seq1  AATATGGCAATCACAGCTCTGGATTTTCACTTTGGGCTAGCATGCTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGCAATCACAGCTCTGGATTTTCACTTTGGGCTAGCATGCTTATT  650

seq1  TACTCATTCGTTTGTTCATTGGTCCATCCATTCATCCATCCATCCATCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATTCGTTTGTTCATTGGTCCATCCATTCATCCATCCATCCATCCA  700

seq1  TCCATCTATCCGTCCATTCACTTTTATTTTATTGAGCTTCCTGTCTGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTATCCGTCCATTCACTTTTATTTTATTGAGCTTCCTGTCTGAAG  750

seq1  GCCAGATCCTACAGTTTAGAATGGACTCAGTGGTCTCACCTCCCGCTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATCCTACAGTTTAGAATGGACTCAGTGGTCTCACCTCCCGCTGCC  800

seq1  CTCCTGATGCCCTCAGGCTAACGAGAGGCTAAGCACTTTTTAGAAGTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGATGCCCTCAGGCTAACGAGAGGCTAAGCACTTTTTAGAAGTTAT  850

seq1  TTAATTTAATCCTTATAATGACCATAGCAGGTTCTGTCTGGCTGATTGAT  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTAATTTAATCCTTATAATGACCATAGCA-GTTCTGTCTGGCTGATTGAT  899

seq1  ACATTAGGAAAGGAAGGTACCGAATGGTTATGTAAGTACCTGAGGCTAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGGAAAGGAAGGTACCGAATGGTTATGTAAGTACCTGAGGCTAAG  949

seq1  ATACCTTGGAAGAGGCTGGGCCGGGACTTTAAACCTAATCTGCCTGGCTA  1000
      ||||||||||||| |||||||||||||||| |||||||||||||||||||
seq2  ATACCTTGGAAGA-GCTGGGCCGGGACTTT-AACCTAATCTGCCTGGCTA  997

seq1  CCACAAGTCTTTGCTCCTCTCTGACTCTGTCTCTCTGTCTGTTTCTGTCT  1050
      ||||||||||||||||||||||||||| ||| ||||||||||||| ||| 
seq2  CCACAAGTCTTTGCTCCTCTCTGACTCGGTCCCTCTGTCTGTTTC-GTCC  1046

seq1  CTGTCTCTGTTTCTGTCTCTCTCTCTCTCTCACACACACACACACAT-AC  1099
      |||||||   |||||||||| | ||| ||||||| ||||| ||| || ||
seq2  CTGTCTC--GTTCTGTCTCT-TTTCT-TCTCACA-ACACA-ACAAATAAC  1090

seq1  ACTCTCACGTATACACAGTCTTACTATGCCACCCAGGTTGGTTGGTCTTG  1149
      ||||||||||| |||||||| ||| ||| |||| ||  | ||||||||||
seq2  ACTCTCACGTAAACACAGTC-TAC-ATG-CACCAAG--TTGTTGGTCTTG  1135

seq1  AACTTGTGACCTCCTGAGTGTTGTTGTGACAGGTTTGAGCTACCACCGCT  1199
      ||||| | ||| ||||||    ||| || ||   | ||     |||||||
seq2  AACTTTTAACC-CCTGAG----GTT-TGGCACTGTGGATTCCTCACCGCT  1179

seq1  TGCTAGGAGAGAAC  1213
      |   | ||||||||
seq2  TTGCAAGAGAGAAC  1193