BAC Information

Click to search

BAC

Clone NameB6Ng01-043M16
Chromosome4 (Build37)
Map Location 149,049,803 - 149,224,766
singlet/doubletdoublet
Overlap genePik3cd, D4Ertd429e, Slc25a33
Upstream geneLOC100041733, LOC100041742, LOC100041755, Casz1, Pex14, LOC670864, Dffa, Cort, Apitd1, LOC666774, Pgd, Kif1b, LOC100041794, Ube4b, Rbp7, LOC627985, Nmnat1, Lzic, Ctnnbip1, Clstn1
Downstream geneSpsb1, H6pd, Gpr157, Slc2a5, LOC435818, Car6, LOC100041882, Eno1, LOC666880, LOC384091, Rere, Slc45a1, LOC677027
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043M16.bB6Ng01-043M16.g
ACCDH869745DH869746
length1,1131,064
definitionDH869745|Mus musculus domesticus DNA, BAC clone: B6Ng01-043M16, 5' end.DH869746|Mus musculus domesticus DNA, BAC clone: B6Ng01-043M16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,223,642 - 149,224,766)(149,049,803 - 149,050,878)
sequence
gaattctttggaatgacactgtcctatctattggatcccatatcaccatg
ccctagaattttagtggtataaagaagcctttacctgggacataggacat
gggcacaaattctagttctggccctttttagctgtgcaaaacagtgtttc
cttccttagagatacgcctcgagcttcagtaggctttcgtcactgtgttt
tggtccatcagagtttcaaaaaaaaaagtagaaaaaccaccgtgagcagc
ttggatgctcgctgcactcattttgtttcctaaaactttcaaaggcattc
gttagggagtcaaagtcaccttcctatataccagccaagcatgggcgtga
cctcttgctacagaattctgcctagaatcaaccctagacgtcactggtct
cactcgagatcttaaaatctcagtttgtgaggatgtggctcagttgatag
agtgctcagctagcatgcaggaggccctgggtttaattcacaaggcacac
attctcagaactggggcggcagaggcaggaggtggaggcaggtttattgt
cagctgtagatgtgctggctccattatggcccaagctatagtcatctaag
agaagggcactttaattgagaagatgcctccataagaacaggctgtaagc
aaaccttggagcattttcttagtggctgatgagccagcccactgtgggcg
gtgccatccctaggctggtgggtctggatacagtaagaaaacagattgag
taagccagtaagcagcacccctccatggcctctgcatcagcgtctgcctc
caggttcttgctcttgtttgaattcctgccctgtcttccttcaatgatgg
actacaatgtgtgccacataaaccctcccctcctgaaattactttggtca
tcatgacaatagcaaccctgacaaagacagcagagttcagaacacctgag
atatatgaaatcctgcctcaaaaaaaaaaatcacataaatcagcttgttg
cctctgggcttcatggctcatcaagcacctgatgtatcagaggtgctcag
atccctgtcaagcttgtctgtcttagctccttcaagtcatgcataagaaa
gcctctgggtaga
gaattccaagcaggctcaaccctgtgtatgaatcggcctctccagtgggg
tgctatcgcctctggatgctccgccaccctggaaccctaatgaactccct
cccaccctgtccacccaaacccaggccgacaaagcccggtgttaggcggg
gcagagcatctggccagttagaggagacacagggatcccacagactcccg
cacaggtgggtttcgtacccggtgtcggtggcaggggcgggctccgtctc
cctggagacagttgcccgggggacacggcgggagggtcccgaagtgaccg
gagggcgccagcctcccggcggccgtgtgcagccggccgggcctgagggc
aggccccgcttgaggtggcggtgcgcgagcgagcatcggcggaggggcgc
ggctcggggcggggctgaacaacgggcaagagagggcggccgggtggggc
gaggcggggcccggtcggaggcggagcatcccaggaatggggcgggagca
gagcccgcctcaccattgcactgtccactcctcttaataccccaggtctg
acacaacgtggcagaaggaatagccgcggggcgctaggagatagacacat
tttagccaggggctaaggccggagccttaagggttctccccatctcccca
tcctggagtctcagaactgccgagtgattcaggatgacaaacgcagtcta
gtcctggatctcttaaaaaccagcagatattaagcactatttataaagcg
tgatctagtcatctacccagcttctgtcttagtttgctttctattgctct
gataaaacaccatgacaaaaagcaatttgggggagagggttatttggctt
acatatgccttgggcacagtccattaagggaaaccaaagcaggaacctag
aggcaggcacagaagctgagccacagagaaatgctcttactggctaactc
agcctgtttctcaggacgcctgaaccactacccaggtgtcactgccccta
ctgagctgggcccatcatcataaataagaaatacttcacagtagtgtcct
ctggtatgtcaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_149223642_149224766
seq2: B6Ng01-043M16.b_44_1156 (reverse)

seq1  TCTACCCAGAGGCTTTCTCATGCATGACTTGAAAGGGAGCTTAGGACAGA  50
      |||||||||||||||||| ||||||||||||||  ||||| || ||||||
seq2  TCTACCCAGAGGCTTTCTTATGCATGACTTGAA--GGAGC-TAAGACAGA  47

seq1  CAAGCTTTGACAGGGGATCCTGAGCACCTCTGATACATCAGGGTGCTGTG  100
      ||||| |||||| ||||| ||||||||||||||||||||| |||||| ||
seq2  CAAGC-TTGACA-GGGAT-CTGAGCACCTCTGATACATCA-GGTGCT-TG  92

seq1  ATGAGCCATGAAGCCCAGAGGCAACAAGCTGGATTTATGTGATTTTTTTT  150
      |||||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  ATGAGCCATGAAGCCCAGAGGCAACAAGCT-GATTTATGTGA-TTTTTTT  140

seq1  TTTTGAGGCAGGATTTCATATATCTCAGGTTGTTCCTGAACTCTGCTGTC  200
      ||||||||||||||||||||||||||||| |||| |||||||||||||||
seq2  TTTTGAGGCAGGATTTCATATATCTCAGG-TGTT-CTGAACTCTGCTGTC  188

seq1  TTTGTCAGGGTTGCTATTGTCATGATGACCAAAGTAATTTCAGGAGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAGGGTTGCTATTGTCATGATGACCAAAGTAATTTCAGGAGGGGA  238

seq1  GGGTTTATGTGGCACACATTGTAGTCCATCATTGAAGGAAGACAGGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTATGTGGCACACATTGTAGTCCATCATTGAAGGAAGACAGGGCAG  288

seq1  GAATTCAAACAAGAGCAAGAACCTGGAGGCAGACGCTGATGCAGAGGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAAGAGCAAGAACCTGGAGGCAGACGCTGATGCAGAGGCCA  338

seq1  TGGAGGGGTGCTGCTTACTGGCTTACTCAATCTGTTTTCTTACTGTATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGGTGCTGCTTACTGGCTTACTCAATCTGTTTTCTTACTGTATCC  388

seq1  AGACCCACCAGCCTAGGGATGGCACCGCCCACAGTGGGCTGGCTCATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCACCAGCCTAGGGATGGCACCGCCCACAGTGGGCTGGCTCATCAG  438

seq1  CCACTAAGAAAATGCTCCAAGGTTTGCTTACAGCCTGTTCTTATGGAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAAGAAAATGCTCCAAGGTTTGCTTACAGCCTGTTCTTATGGAGGC  488

seq1  ATCTTCTCAATTAAAGTGCCCTTCTCTTAGATGACTATAGCTTGGGCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTCAATTAAAGTGCCCTTCTCTTAGATGACTATAGCTTGGGCCAT  538

seq1  AATGGAGCCAGCACATCTACAGCTGACAATAAACCTGCCTCCACCTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGCCAGCACATCTACAGCTGACAATAAACCTGCCTCCACCTCCTG  588

seq1  CCTCTGCCGCCCCAGTTCTGAGAATGTGTGCCTTGTGAATTAAACCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCGCCCCAGTTCTGAGAATGTGTGCCTTGTGAATTAAACCCAGG  638

seq1  GCCTCCTGCATGCTAGCTGAGCACTCTATCAACTGAGCCACATCCTCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTGCATGCTAGCTGAGCACTCTATCAACTGAGCCACATCCTCACA  688

seq1  AACTGAGATTTTAAGATCTCGAGTGAGACCAGTGACGTCTAGGGTTGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGATTTTAAGATCTCGAGTGAGACCAGTGACGTCTAGGGTTGATT  738

seq1  CTAGGCAGAATTCTGTAGCAAGAGGTCACGCCCATGCTTGGCTGGTATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCAGAATTCTGTAGCAAGAGGTCACGCCCATGCTTGGCTGGTATAT  788

seq1  AGGAAGGTGACTTTGACTCCCTAACGAATGCCTTTGAAAGTTTTAGGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGTGACTTTGACTCCCTAACGAATGCCTTTGAAAGTTTTAGGAAA  838

seq1  CAAAATGAGTGCAGCGAGCATCCAAGCTGCTCACGGTGGTTTTTCTACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGAGTGCAGCGAGCATCCAAGCTGCTCACGGTGGTTTTTCTACTT  888

seq1  TTTTTTTTGAAACTCTGATGGACCAAAACACAGTGACGAAAGCCTACTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGAAACTCTGATGGACCAAAACACAGTGACGAAAGCCTACTGA  938

seq1  AGCTCGAGGCGTATCTCTAAGGAAGGAAACACTGTTTTGCACAGCTAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCGAGGCGTATCTCTAAGGAAGGAAACACTGTTTTGCACAGCTAAAA  988

seq1  AGGGCCAGAACTAGAATTTGTGCCCATGTCCTATGTCCCAGGTAAAGGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCAGAACTAGAATTTGTGCCCATGTCCTATGTCCCAGGTAAAGGCT  1038

seq1  TCTTTATACCACTAAAATTCTAGGGCATGGTGATATGGGATCCAATAGAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATACCACTAAAATTCTAGGGCATGGTGATATGGGATCCAATAGAT  1088

seq1  AGGACAGTGTCATTCCAAAGAATTC  1125
      |||||||||||||||||||||||||
seq2  AGGACAGTGTCATTCCAAAGAATTC  1113

seq1: chr4_149049803_149050878
seq2: B6Ng01-043M16.g_67_1130

seq1  GAATTCCAAGCAGGCTCAACCCTGTGTATGAATCGGCCTCTCCAGTGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCAGGCTCAACCCTGTGTATGAATCGGCCTCTCCAGTGGGG  50

seq1  TGCTATCGCCTCTGGATGCTCCGCCACCCTGGAACCCTAATGAACTCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATCGCCTCTGGATGCTCCGCCACCCTGGAACCCTAATGAACTCCCT  100

seq1  CCCACCCTGTCCACCCAAACCCAGGCCGACAAAGCCCGGTGTTAGGCGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCTGTCCACCCAAACCCAGGCCGACAAAGCCCGGTGTTAGGCGGG  150

seq1  GCAGAGCATCTGGCCAGTTAGAGGAGACACAGGGATCCCACAGACTCCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCATCTGGCCAGTTAGAGGAGACACAGGGATCCCACAGACTCCCG  200

seq1  CACAGGTGGGTTTCGTACCCGGTGTCGGTGGCAGGGGCGGGCTCCGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTGGGTTTCGTACCCGGTGTCGGTGGCAGGGGCGGGCTCCGTCTC  250

seq1  CCTGGAGACAGTTGCCCGGGGGACACGGCGGGAGGGTCCCGAAGTGACCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGACAGTTGCCCGGGGGACACGGCGGGAGGGTCCCGAAGTGACCG  300

seq1  GAGGGCGCCAGCCTCCCGGCGGCCGTGTGCAGCCGGCCGGGCCTGAGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCGCCAGCCTCCCGGCGGCCGTGTGCAGCCGGCCGGGCCTGAGGGC  350

seq1  AGGCCCCGCTTGAGGTGGCGGTGCGCGAGCGAGCATCGGCGGAGGGGCGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCCGCTTGAGGTGGCGGTGCGCGAGCGAGCATCGGCGGAGGGGCGC  400

seq1  GGCTCGGGGCGGGGCTGAACAACGGGCAAGAGAGGGCGGCCGGGTGGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGGGGCGGGGCTGAACAACGGGCAAGAGAGGGCGGCCGGGTGGGGC  450

seq1  GAGGCGGGGCCCGGTCGGAGGCGGAGCATCCCAGGAATGGGGCGGGAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCGGGGCCCGGTCGGAGGCGGAGCATCCCAGGAATGGGGCGGGAGCA  500

seq1  GAGCCCGCCTCACCATTGCACTGTCCACTCCTCTTAATACCCCAGGTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCGCCTCACCATTGCACTGTCCACTCCTCTTAATACCCCAGGTCTG  550

seq1  ACACAACGTGGCAGAAGGAATAGCCGCGGGGCGCTAGGAGATAGACACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACGTGGCAGAAGGAATAGCCGCGGGGCGCTAGGAGATAGACACAT  600

seq1  TTTAGCCAGGGGCTAAGGCCGGAGCCTTAAGGGTTCTCCCCATCTCCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCAGGGGCTAAGGCCGGAGCCTTAAGGGTTCTCCCCATCTCCCCA  650

seq1  TCCTGGAGTCTCAGAACTGCCGAGTGATTCAGGATGACAAACGCAGTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAGTCTCAGAACTGCCGAGTGATTCAGGATGACAAACGCAGTCTA  700

seq1  GTCCTGGATCTCTTAAAAACCAGCAGATATTAAGCACTATTTATAAAGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGATCTCTTAAAAACCAGCAGATATTAAGCACTATTTATAAAGCG  750

seq1  TGATCTAGTCATCTACCCAGCTTCTGTCTTAGTTTGCTTTCTATTGCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTAGTCATCTACCCAGCTTCTGTCTTAGTTTGCTTTCTATTGCTCT  800

seq1  GATAAAACACCATGACAAAAAGCAATTT-GGGGAGAGGGTTTATTTGGCT  849
      |||||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  GATAAAACACCATGACAAAAAGCAATTTGGGGGAGAGGG-TTATTTGGCT  849

seq1  TACATATGCC-TGGGCACAGTCCATTAAGGGAAACCAAGGCAGGAACCTA  898
      |||||||||| ||||||||||||||||||||||||||| |||||||||||
seq2  TACATATGCCTTGGGCACAGTCCATTAAGGGAAACCAAAGCAGGAACCTA  899

seq1  GAGGCAGGCACAGAAGCTGAGGCCACAGAGAAATGCTCTTACTGGCTAAC  948
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAGGCAGGCACAGAAGCTGA-GCCACAGAGAAATGCTCTTACTGGCTAAC  948

seq1  TCAGCCTGTTTTCTCAGGACCGCCTGGAACCACCTACCCAAGGGTGTCAC  998
      |||||||| |||||||||| ||||| |||||| |||||||  ||||||||
seq2  TCAGCCTG-TTTCTCAGGA-CGCCT-GAACCA-CTACCCA--GGTGTCAC  992

seq1  TGCCCCTACTGAGCTGGGCCCCATCAATCATAAATCAAGAAAATACTTCC  1048
      |||||||||||||||||| |||||| ||||||||| ||| |||||||| |
seq2  TGCCCCTACTGAGCTGGG-CCCATC-ATCATAAAT-AAG-AAATACTT-C  1037

seq1  ACAGTAGTGT-CTCTGAGTAGTGTCAAGT  1076
      |||||||||| ||||| ||| ||||||||
seq2  ACAGTAGTGTCCTCTG-GTA-TGTCAAGT  1064