BAC Information

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BAC

Clone NameB6Ng01-044B09
Chromosome2 (Build37)4 (Build37)
Map Location 75,739,827 - 75,740,753142,920,931 - 142,921,411
singlet/doubletsingletsinglet
Overlap geneAgps
Upstream geneA330043C09Rik, LOC667739, LOC545423, LOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453
Downstream geneTtc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044B09.bB6Ng01-044B09.g
ACCDH869944DH869945
length926457
definitionDH869944|Mus musculus domesticus DNA, BAC clone: B6Ng01-044B09, 5' end.DH869945|Mus musculus domesticus DNA, BAC clone: B6Ng01-044B09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(75,739,827 - 75,740,753)(142,920,931 - 142,921,411)
sequence
gaattcagaattctagaaaattaatgcagctataaataagcacagcatga
tgtatttggaataaatatcctatttttaaggttcttgttaattttgaggc
taagccaaaagtaagtttatgggtctttttccccaaatttattttatttt
tacattctccccctagcatttatttattttgtgtttgagtatatacatgt
gtatagatacgcgtatcacaacatgtgcatgggggagagtgttcaggagt
cagctcttatctcccaccttgtgggttgtgggtatcactctgaggtcctc
aggcttggtgacagatgcccgcctcccctgctgagctgcttccacagtcc
tacttaccttaatctttaaagccgcttctagcgcacactcctactgccac
aggttgtgattcccaggcaaatgggtgtgtaccaccgaacacacgttttc
catcagtagacttggaggcgtatcttcctggcacttagcgtggttaaagt
gcttgctttactatagcctccctccctccctctttctctcttccttcctt
cctagttagctagctagctagttagttagttagttttggtttttagattt
ccgagagacaggatttctctgtgtagtcctggctgtttggcagctcattc
tggggaccaggctggccaagaactcagctctgcctatgtctgcagttgaa
cggctggaagtaaagatgtgcagcaccacacctgctgcctttttctaaat
aaaagtcagtgtgaggaaactcctacctcttgttacttttaccttgatgc
tcaatttttgtattggctatttaatactttggccactacaaatctattct
gaaatcttttctacatatgtataagctttttcacaatagagactctattc
actaaagactatttgagtttcttttc
acttctaggtttatccaccaagaaaataagatacacacccatacaaaaga
aacttgcacacaaactgttcacaccagcaaatcatagcagccagaaagtg
gaaacaactcaaatgtccatcaacggatgaattaatacaaaaaaatgcca
tatatctctatatatgactgaaatgcaatatgaaaattatgagaaaagtg
gatgaatgaggtgtcgacatatgctacctgaatagaccttttaaaattat
gctaaatgaaaaaaaaagccagtctttctgggtggggtagcacacacctt
taatctcagcactccagaggtgaggcaggggcattcgaggccagcctggt
ctacagagtgagttccaggacagccagggcttcacagagaaaccctgact
caaaaaagaagaaggaagagcagggggagaaggaggaagaagaggaggag
gaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_75739827_75740753
seq2: B6Ng01-044B09.b_43_968

seq1  GAATTCAGAATTCTAGAAAATTAATGCAGCTATAAATAAGCACAGCATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAATTCTAGAAAATTAATGCAGCTATAAATAAGCACAGCATGA  50

seq1  TGTATTTGGAATAAATATCCTATTTTTAAGGTTCTTGTTAATTTTGAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGGAATAAATATCCTATTTTTAAGGTTCTTGTTAATTTTGAGGC  100

seq1  TAAGCCAAAAGTAAGTTTATGGGTCTTTTTCCCCAAATTTATTTTATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCAAAAGTAAGTTTATGGGTCTTTTTCCCCAAATTTATTTTATTTT  150

seq1  TACATTCTCCCCCTAGCATTTATTTATTTTGTGTTTGAGTATATACATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCTCCCCCTAGCATTTATTTATTTTGTGTTTGAGTATATACATGT  200

seq1  GTATAGATACGCGTATCACAACATGTGCATGGGGGAGAGTGTTCAGGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGATACGCGTATCACAACATGTGCATGGGGGAGAGTGTTCAGGAGT  250

seq1  CAGCTCTTATCTCCCACCTTGTGGGTTGTGGGTATCACTCTGAGGTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTTATCTCCCACCTTGTGGGTTGTGGGTATCACTCTGAGGTCCTC  300

seq1  AGGCTTGGTGACAGATGCCCGCCTCCCCTGCTGAGCTGCTTCCACAGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGGTGACAGATGCCCGCCTCCCCTGCTGAGCTGCTTCCACAGTCC  350

seq1  TACTTACCTTAATCTTTAAAGCCGCTTCTAGCGCACACTCCTACTGCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACCTTAATCTTTAAAGCCGCTTCTAGCGCACACTCCTACTGCCAC  400

seq1  AGGTTGTGATTCCCAGGCAAATGGGTGTGTACCACCGAACACACGTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTGATTCCCAGGCAAATGGGTGTGTACCACCGAACACACGTTTTC  450

seq1  CATCAGTAGACTTGGAGGCGTATCTTCCTGGCACTTAGCGTGGTTAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTAGACTTGGAGGCGTATCTTCCTGGCACTTAGCGTGGTTAAAGT  500

seq1  GCTTGCTTTACTATAGCCTCCCTCCCTCCCTCTTTCTCTCTTCCTTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTTTACTATAGCCTCCCTCCCTCCCTCTTTCTCTCTTCCTTCCTT  550

seq1  CCTAGTTAGCTAGCTAGCTAGTTAGTTAGTTAGTTTTGGTTTTTAGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTAGCTAGCTAGCTAGTTAGTTAGTTAGTTTTGGTTTTTAGATTT  600

seq1  CCGAGAGACAGGATTTCTCTGTGTAGTCCTGGCTGTTTGGCAGCTCATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGAGACAGGATTTCTCTGTGTAGTCCTGGCTGTTTGGCAGCTCATTC  650

seq1  TGGGGACCAGGCTGGCCAAGAACTCAGCTCTGCCTATGTCTGCAGTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACCAGGCTGGCCAAGAACTCAGCTCTGCCTATGTCTGCAGTTGAA  700

seq1  CGGCTGGAAGTAAAGATGTGCAGCACCACACCTGCTGCC-TTTTCTAAAT  749
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CGGCTGGAAGTAAAGATGTGCAGCACCACACCTGCTGCCTTTTTCTAAAT  750

seq1  AAAAGTCAGTGTGAGGAAACTCCTACCTCTTGTTACTTTAACCTTGATGC  799
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAAAGTCAGTGTGAGGAAACTCCTACCTCTTGTTACTTTTACCTTGATGC  800

seq1  TCAATTTTTGTATTGGCTATTTTAATACTTTGGCCACTACAAATCTATTC  849
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCAATTTTTGTATTGGCTA-TTTAATACTTTGGCCACTACAAATCTATTC  849

seq1  TGAAATCTTTTCTACATATGTATAAGCTTTTCCACAATAGAGACTCTATT  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGAAATCTTTTCTACATATGTATAAGCTTTTTCACAATAGAGACTCTATT  899

seq1  CACTAAAGACATATTTGAGTTTCTTTTC  927
      |||||||||| |||||||||||||||||
seq2  CACTAAAGAC-TATTTGAGTTTCTTTTC  926

seq1: chr4_142920931_142921411
seq2: B6Ng01-044B09.g_384_532 (reverse)

seq1  CCTCCTCCTCCTCCTCTTCCTTCTTGTAGAGAAACACCACCACCAACAAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTAAGGATGATTCTGAGACAGAATTCAAATATTTCTTTCTTTCCTTTTCC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTT  200
                                                        
seq2  --------------------------------------------------  0

seq1  CCTTTTCCTTTTCCTTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTT  250
                                                        
seq2  --------------------------------------------------  0

seq1  CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTC  300
                                                        
seq2  --------------------------------------------------  0

seq1  TTTCTTTCTTTCTTTCTTTCT-TTCTTTCT-TTCTTTCTTTCCTTCT-TT  347
                     | | ||  || | || ||||| |  |||||||   
seq2  ---------------CCTCCTCCTCCTCCTCTTCTTCC--TCCTTCTCCC  33

seq1  CCTTCT-TTCTTTCTTTCTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCT  396
      ||| || ||| ||| |||||||||||| ||||||||||||||| ||||||
seq2  CCTGCTCTTCCTTC-TTCTTTTTTGAGTCAGGGTTTCTCTGTGAAGCCCT  82

seq1  GGCTATCCCGGAACTCACTCTGTAGACCAGGCTAGCCTTGAACTTAGAAA  446
      |||| ||| |||||||||||||||||||||||| |||| |        ||
seq2  GGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCG--------AA  124

seq1  TCCTCCTGCCTCTACCTCCCAAGTGCTGGGAGTGC  481
      | | |||||||| |||||   |||||         
seq2  TGCCCCTGCCTC-ACCTCTGGAGTGC---------  149