BAC Information

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BAC

Clone NameB6Ng01-044I21
Chromosome4 (Build37)
Map Location 85,473,259 - 85,624,182
singlet/doubletdoublet
Overlap geneLOC668052
Upstream geneD530005L17Rik, LOC622811, LOC100040303, Sh3gl2, A930009N24
Downstream geneAdamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044I21.bB6Ng01-044I21.g
ACCDH870274DH870275
length9801,115
definitionDH870274|Mus musculus domesticus DNA, BAC clone: B6Ng01-044I21, 5' end.DH870275|Mus musculus domesticus DNA, BAC clone: B6Ng01-044I21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,623,195 - 85,624,182)(85,473,259 - 85,474,376)
sequence
gaattcccagcctcactggtctaattgaaatgctgatcagcatcaaagag
ttccttctagagaaaggccagactcaaggggaataagtaagttcaggaac
atctggagaacagcagacagcatccaggggtcctgcatttcccctttgat
gtcagcatcacctatgcataacaacagcaagcttgtaaattttcatttag
cttctaggatggtactcatccagcagccatgtgtgtcacagatcctaaga
aacaaaaatatgtcccacttaaaggaggccaagtctttctcttaaactaa
gtcacctaccatagtccagtcacaaatccagactcagtgctaactgacca
cttgccattgagaagtccatgcctcctaaatgcagttcacaaaagacttt
agtctaggattgattctgaagctacagatgtgaatgtgacctgactttct
ggccatctactccttcagcactgccacataggagcgcatttgggaaaatg
ggtcagttcccatgatgcacttaaaatgcaaatttcaaagcctcttttgg
agtgtaagcatggtctacagcactgtctgtaaatgattttattaatacac
agaacttatgaaaaaagcatgaaaaatcaattcttccctaaattgtatgt
gtcaagatcttgctttgcaacaaacaatgccaatgttttgtatgtatttt
tatttttatttttagggaaatacaccctttattttattttatttccccca
gaaatccactatcccatcctccctcccctgcttctatgagggtgttcctc
ttacccactcacccacttcccatcctcgatttcctacaactggggcatct
atcgaagccttcataggacaagtaactttcctcccattgatgcatgacaa
gccatctggaacatttgcagtttggagccatgtgtactcttggtgatggc
tatccctgggaaccctttgggactgttggt
gaattctcctaggtacctgaactgcaccaaactgcatcctccggtatgga
ggagaaccttgtgtctccttcaggtctgtgtgctttgtcagtacaacagt
gctcctgcctctttctcccactggaaaagagtcaagaatgaggtatgtgc
ttatatgtgattttttttctgacagaatctgaacaaagagaacaaagtgc
acagttgagaaggtttataaatgtgtcaccttgatgtgtaactggacaca
gtctggaaatgtgcatcatctggttttggattgatttccatatggagtag
gaggtaatggactattaaggccactgaatgccgtaaggacccgaatttgt
ggtgccctggaagggcccactggggcagaaaacctcccttttgcctcttg
aaacacctgaaacaagaaaaccaactgtgtagttatttcattagtcctga
gatatgacaagagaactgtcagtagaaaataatagaaatgacaggccatt
gtaaaaatattcccttttgctcaaatcaccggtgagcaatccagacttgt
taaactgaacactggaagactataaatgcatttgaatggtttgattctca
ggtgatttcctgcataaagttgtactcagtcaatatatgtctcctaactt
taatacagactacttaaaaaactataaagtaggagggagagatatttcaa
acaccttgtatccgtcctagatttgacaaatttcagcatttgccttattt
ggtttgaatcttttctgattaggtcaaggcatcaaagtagaaaatggact
agtctagctctccccttttggttcatgtctagatataaaattttatattc
acagaaattcttctgtcgcattgctgaggccctgtgcgtcaggagtaatc
aaacatcacattgctgaaaaccctaaggatgcacaggtctccaggctgct
catgttacttgcaacccaatccaaaatcaaaataacatgccacagaaatt
atgagctgaaattttttttggaaggaatggtttcaggttaaagatatggc
tggaattcagtatttgactggatataagttcatagacaaaggtgaaattt
tcccagggactagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_85623195_85624182
seq2: B6Ng01-044I21.b_45_1024 (reverse)

seq1  ACCAACCAGTCCCCCAAGAGCTCCCAGGGACTAAGCCATCAACCAAGGAG  50
      ||||| |||| ||| ||| | |||||||||   ||||||| ||||| |||
seq2  ACCAA-CAGT-CCCAAAGGGTTCCCAGGGA--TAGCCATC-ACCAA-GAG  44

seq1  TACACATGGCTCC-AACTGCATATGTTCCAGATGGCCTTGTCATGCATCA  99
      ||||||||||||| ||||||| ||||||||||||| ||||||||||||||
seq2  TACACATGGCTCCAAACTGCAAATGTTCCAGATGG-CTTGTCATGCATCA  93

seq1  ATGGGAGGAAAGTTACTTGGTCCTATGAAGGC-TCGATAGATGCCCCAG-  147
      |||||||||||||||||| ||||||||||||| |||||||||||||||| 
seq2  ATGGGAGGAAAGTTACTT-GTCCTATGAAGGCTTCGATAGATGCCCCAGT  142

seq1  TGTAGGGAAATCGAGGATGGGGAGGTGGGTGAGTGGGT-AGAGGAACACC  196
      |||| ||||||||||||| |||| |||||||||||||| |||||||||||
seq2  TGTA-GGAAATCGAGGAT-GGGAAGTGGGTGAGTGGGTAAGAGGAACACC  190

seq1  CTCATAGAAGCAGGGGGAGGGAGGATGGGATAGTGGATTTCTGGGGGAAA  246
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTCATAGAAGCA-GGGGAGGGAGGATGGGATAGTGGATTTCTGGGGGAAA  239

seq1  TAAAATAAAATAAAGGGTGTTATTTCCCTAAAAATAAAAATAAAAATACA  296
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TAAAATAAAATAAAGGGTG-TATTTCCCTAAAAATAAAAATAAAAATACA  288

seq1  TACAAAACATTGGCATTGTTTGTTGCAAAGCAAGATCTTGACACATACAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAACATTGGCATTGTTTGTTGCAAAGCAAGATCTTGACACATACAA  338

seq1  TTTAGGGAAGAATTGATTTTTCATGCTTTTTTCATAAGTTCTGTGTATTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGAAGAATTGATTTTTCATGCTTTTTTCATAAGTTCTGTGTATTA  388

seq1  ATAAAATCATTTACAGACAGTGCTGTAGACCATGCTTACACTCCAAAAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATCATTTACAGACAGTGCTGTAGACCATGCTTACACTCCAAAAGA  438

seq1  GGCTTTGAAATTTGCATTTTAAGTGCATCATGGGAACTGACCCATTTTCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGAAATTTGCATTTTAAGTGCATCATGGGAACTGACCCATTTTCC  488

seq1  CAAATGCGCTCCTATGTGGCAGTGCTGAAGGAGTAGATGGCCAGAAAGTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCGCTCCTATGTGGCAGTGCTGAAGGAGTAGATGGCCAGAAAGTC  538

seq1  AGGTCACATTCACATCTGTAGCTTCAGAATCAATCCTAGACTAAAGTCTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACATTCACATCTGTAGCTTCAGAATCAATCCTAGACTAAAGTCTT  588

seq1  TTGTGAACTGCATTTAGGAGGCATGGACTTCTCAATGGCAAGTGGTCAGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAACTGCATTTAGGAGGCATGGACTTCTCAATGGCAAGTGGTCAGT  638

seq1  TAGCACTGAGTCTGGATTTGTGACTGGACTATGGTAGGTGACTTAGTTTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTGAGTCTGGATTTGTGACTGGACTATGGTAGGTGACTTAGTTTA  688

seq1  AGAGAAAGACTTGGCCTCCTTTAAGTGGGACATATTTTTGTTTCTTAGGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGACTTGGCCTCCTTTAAGTGGGACATATTTTTGTTTCTTAGGA  738

seq1  TCTGTGACACACATGGCTGCTGGATGAGTACCATCCTAGAAGCTAAATGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGACACACATGGCTGCTGGATGAGTACCATCCTAGAAGCTAAATGA  788

seq1  AAATTTACAAGCTTGCTGTTGTTATGCATAGGTGATGCTGACATCAAAGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTACAAGCTTGCTGTTGTTATGCATAGGTGATGCTGACATCAAAGG  838

seq1  GGAAATGCAGGACCCCTGGATGCTGTCTGCTGTTCTCCAGATGTTCCTGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGCAGGACCCCTGGATGCTGTCTGCTGTTCTCCAGATGTTCCTGA  888

seq1  ACTTACTTATTCCCCTTGAGTCTGGCCTTTCTCTAGAAGGAACTCTTTGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTTATTCCCCTTGAGTCTGGCCTTTCTCTAGAAGGAACTCTTTGA  938

seq1  TGCTGATCAGCATTTCAATTAGACCAGTGAGGCTGGGAATTC  988
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATCAGCATTTCAATTAGACCAGTGAGGCTGGGAATTC  980

seq1: chr4_85473259_85474376
seq2: B6Ng01-044I21.g_69_1183

seq1  GAATTCTCCTAGGTACCTGAACTGCACCAAACTGCATCCTCCGGTATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTAGGTACCTGAACTGCACCAAACTGCATCCTCCGGTATGGA  50

seq1  GGAGAACCTTGTGTCTCCTTCAGGTCTGTGTGCTTTGTCAGTACAACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACCTTGTGTCTCCTTCAGGTCTGTGTGCTTTGTCAGTACAACAGT  100

seq1  GCTCCTGCCTCTTTCTCCCACTGGAAAAGAGTCAAGAATGAGGTATGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGCCTCTTTCTCCCACTGGAAAAGAGTCAAGAATGAGGTATGTGC  150

seq1  TTATATGTGATTTTTTTTCTGACAGAATCTGAACAAAGAGAACAAAGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGTGATTTTTTTTCTGACAGAATCTGAACAAAGAGAACAAAGTGC  200

seq1  ACAGTTGAGAAGGTTTATAAATGTGTCACCTTGATGTGTAACTGGACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGAGAAGGTTTATAAATGTGTCACCTTGATGTGTAACTGGACACA  250

seq1  GTCTGGAAATGTGCATCATCTGGTTTTGGATTGATTTCCATATGGAGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAAATGTGCATCATCTGGTTTTGGATTGATTTCCATATGGAGTAG  300

seq1  GAGGTAATGGACTATTAAGGCCACTGAATGCCGTAAGGACCCGAATTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAATGGACTATTAAGGCCACTGAATGCCGTAAGGACCCGAATTTGT  350

seq1  GGTGCCCTGGAAGGGCCCACTGGGGCAGAAAACCTCCCTTTTGCCTCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCCTGGAAGGGCCCACTGGGGCAGAAAACCTCCCTTTTGCCTCTTG  400

seq1  AAACACCTGAAACAAGAAAACCAACTGTGTAGTTATTTCATTAGTCCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCTGAAACAAGAAAACCAACTGTGTAGTTATTTCATTAGTCCTGA  450

seq1  GATATGACAAGAGAACTGTCAGTAGAAAATAATAGAAATGACAGGCCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGACAAGAGAACTGTCAGTAGAAAATAATAGAAATGACAGGCCATT  500

seq1  GTAAAAATATTCCCTTTTGCTCAAATCACCGGTGAGCAATCCAGACTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATATTCCCTTTTGCTCAAATCACCGGTGAGCAATCCAGACTTGT  550

seq1  TAAACTGAACACTGGAAGACTATAAATGCATTTGAATGGTTTGATTCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGAACACTGGAAGACTATAAATGCATTTGAATGGTTTGATTCTCA  600

seq1  GGTGATTTCCTGCATAAAGTTGTACTCAGTCAATATATGTCTCCTAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATTTCCTGCATAAAGTTGTACTCAGTCAATATATGTCTCCTAACTT  650

seq1  TAATACAGACTACTT-AAAAACTATAAAGTAGGAGGGAGAGATATTTCAA  699
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TAATACAGACTACTTAAAAAACTATAAAGTAGGAGGGAGAGATATTTCAA  700

seq1  ACACCTTGTATCCGTCCTAGATTTGACAAATTTCAGCATTTGCCTTATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTGTATCCGTCCTAGATTTGACAAATTTCAGCATTTGCCTTATTT  750

seq1  GGTTTGAATCTTTTCTGATTAGGTCAAGGCATCAAAGTAGAAAATGGACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGAATCTTTTCTGATTAGGTCAAGGCATCAAAGTAGAAAATGGACT  800

seq1  AGTCTAGCTCTCCCTTGTTGGTTCATGTCTAGATATAAAATTTTATATTT  849
      |||||||||||||| | |||||||||||||||||||||||||||||| ||
seq2  AGTCTAGCTCTCCCCTTTTGGTTCATGTCTAGATATAAAATTTTATA-TT  849

seq1  CACAGAAATTCTTCTGTCGCATTGCTGAGGCCCTGTGCGTCAGGAGTAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAATTCTTCTGTCGCATTGCTGAGGCCCTGTGCGTCAGGAGTAAT  899

seq1  CAAACATCACATTGCTGAAAACCCTAAGGATGCACAGGTCTCCAGGCTGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATCACATTGCTGAAAACCCTAAGGATGCACAGGTCTCCAGGCTGC  949

seq1  TCATGTTACTTGCAACCCAAATCCAAAAATCAAAAT-ACATGCCACAGAA  998
      |||||||||||||||||| ||||| ||||||||||| |||||||||||||
seq2  TCATGTTACTTGCAACCC-AATCC-AAAATCAAAATAACATGCCACAGAA  997

seq1  ATTATTGAGCTGAAATATTTTTTGGAAGGAATGGTTTCAGGGTACAGATA  1048
      |||| ||||||||||| |||||||||||||||||||||||| || |||||
seq2  ATTA-TGAGCTGAAATTTTTTTTGGAAGGAATGGTTTCAGGTTAAAGATA  1046

seq1  TTGGCCTGGATTCAGTTATTGACTGGGATAT-AGTTCATAGACAAGGGTG  1097
       ||||  | |||||||  |||||| |||||| ||||||||||||| ||||
seq2  -TGGCTGGAATTCAGTATTTGACT-GGATATAAGTTCATAGACAAAGGTG  1094

seq1  GAATTTTCCCAGGGACTAGTT  1118
       ||||||||||||||||||||
seq2  AAATTTTCCCAGGGACTAGTT  1115