BAC Information

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BAC

Clone NameB6Ng01-044J16
Chromosome4 (Build37)
Map Location 47,148,323 - 47,245,240
singlet/doubletdoublet
Overlap geneCol15a1
Upstream geneBC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1, 5830415F09Rik, Hemgn, LOC100040643, Anp32b, Nans, Trim14, Coro2a, Tbc1d2, Gabbr2, Anks6, LOC435781, Galnt12
Downstream geneTgfbr1, LOC666236, LOC666473, Alg2, Sec61b, LOC100040788, Nr4a3, Stx17, Txndc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044J16.bB6Ng01-044J16.g
ACCDH870310DH870311
length1,1571,140
definitionDH870310|Mus musculus domesticus DNA, BAC clone: B6Ng01-044J16, 5' end.DH870311|Mus musculus domesticus DNA, BAC clone: B6Ng01-044J16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,244,087 - 47,245,240)(47,148,323 - 47,149,480)
sequence
gaattctctaggctttggcctgggtgggtgtgatgccctgtcgaaggtaa
cagccacaggcaagagccagtttcaacatcagctagatatacactgggtc
ctgtgtctgccactaaccactcgggtggctaagggctagccacttggcct
ctctgagctgaggccttccagtgtgtattgtgtggacatgatggaccctg
gctgagaatatgagatccgtcactcagtgaacatcaggataaacacgggg
cctggcatacatggatcacttgggttatagtcagaggcctagataagttg
atttcttgttgacctctgcccccccccaactcaacataccatgtcccaga
ttagcctcacaagcatcttacatctctgagacaggaaggaaagaatgtga
ttggatgaatagagccagaaagaaataatctgcagaaagcaagcttgcag
aacacggccaaattcctcttctgggactcagttcacttagcatgtacatt
tgtacacacacacacacacacacacacacacacacacacagagagagaga
gagagagagagagagagagagagagagagagagagagcagcctccccaca
agatatctgtgccccatcgagtgagccgagggctctgcagtgtgagtctt
tgatccctcttttcacctgccttcccacacctgattcggaacctgcgtgt
gatgtcacccccagaggctgtgggacaagtggcaagtggaccagagatgc
caagggcacgagggaaaagtttgcagtcaattctctgagtgcgaggactt
ttgctttccactttgggggaacaaaggctctttgagtgtgagcagggcct
tgactctctgaaagatgacatcagctgtaatgagtcaccattccacccca
caggctcctctggagggctcagcttggggactccagggggaaatagctca
gaggagaaggccttgacttctccatttcagattcctggctccacactgca
cgagaaaaatgatgatgtttcgcttacttttgtgggggttgtccaaactg
ctctctgggatatttcttagatggtcctgatgccgcaccaacacattcca
tcaggcaacgctcacaatgaacctagcgaaaatctattattgggaaccct
ctgctct
gaattcaaggccagcctggtctacatagtgagttctaggagagtgaggac
tatgtagaaagaccctgtctcaaaaaaaaaccaaaacaaagcaaacaaac
aaaccaaaagaaaagccttatgcccagtaaacacagtccatcctcacggg
atgcagaattaggcccctgggcttacatgcacaaactcatcttgcacctt
ccaactcctgggagaaatgcctcgactaagctttgatcgtatttgcctct
tgctagctagcttgctttctgcttgccttttttttgagagagggtctcat
gtaaccccagctgaccacaaattcctgattcttctgagggctgtgattat
aggtgtgtgtcactacacccggctgtcaactttgtcatacatgccaaagt
ttctaacaatgatgaacaccatttactgtgtgtactgcgtgtatgagaca
ccatgatgactgactttcatacattgaattttcatgacaacctcacaacg
gaagtgtttgtacattatagatgcatgctttcgtcatttcatttgagagt
tgggggatgtatacaggccagaggacaacttggaggagtaagttctcttc
ttctccccgaggtcttgaggatggaagccatgacatcaagcttgcacttt
ttatgtacagagccatcttgctggccctgtcgtgtttttctagctgagga
gagattggttcccatctgggctgagggatactgagtctaatgagattata
gccttgtctaatctggtcgctttgtctcttaatttagccagaggaaacag
cgtctctcaggacagcctcgtcaggcctggctctcagatgctgtactttg
cagggcaagccttggcacctatgcttggtgtacctgcctcactcattctg
gctcccaggcacctctccccgcttctgaaatctctcagacatagctgggc
tcatttagaattcctggaatatagtttcatccccctgtcagtgtgcctgt
catgtgcagccctaatacttggctgctatgatagtgtagcagtctgcact
gggctggggtttcttgctcctcagcaagccagtaaaacaatgtactaaga
gtaaagccgtctagaggcaattccaccggtctgacatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_47244087_47245240
seq2: B6Ng01-044J16.b_44_1200 (reverse)

seq1  AGAGC--AGGGTTCACTGTAATAGCTCTTCGCTAGGTTC-TTGTGAGCGT  47
      |||||  ||||||| |  |||||| | |||||||||||| ||||||||||
seq2  AGAGCAGAGGGTTCCCAATAATAGATTTTCGCTAGGTTCATTGTGAGCGT  50

seq1  TGCCTG-TGGAATGGTGCTGGTGC-GCATCAGGA-CATCTATGAGGTA-C  93
      |||||| |||||| ||| |||||| ||||||||| |||||| ||  || |
seq2  TGCCTGATGGAAT-GTGTTGGTGCGGCATCAGGACCATCTAAGAAATATC  99

seq1  CCAGAGAGCTGTTAGAACAAACACCACAAAAGTAAGCGAAAACATCAATC  143
      ||||||||| ||| | |||| | ||||||||||||||| ||||||| |||
seq2  CCAGAGAGCAGTTTGGACAACCCCCACAAAAGTAAGCG-AAACATC-ATC  147

seq1  ATTTATCATCGTGCAGTTGTGGAGGCCAGGAATCTGAAATGGAGAAGTCC  193
      |||| || |||||||| |||||| ||||||||||||||||||||||||| 
seq2  ATTTTTC-TCGTGCAG-TGTGGA-GCCAGGAATCTGAAATGGAGAAGTC-  193

seq1  AGAGCCCTTCTCCTCTGAGCTATTTTCCCCCTGGAGTCCCCAAGCTGAGC  243
        || ||||||||||||||||| |||||||||||||||||||||||||||
seq2  -AAGGCCTTCTCCTCTGAGCTA-TTTCCCCCTGGAGTCCCCAAGCTGAGC  241

seq1  CCTCCAGAGGAGCCTGTGGGGTGGAATGGTGACTCATTACAGCTGATGTC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGAGGAGCCTGTGGGGTGGAATGGTGACTCATTACAGCTGATGTC  291

seq1  ATC-TTCAG-GAGTCAAGGCCCTGCTCACACTCAAAGAGCCTTTGTTCCC  341
      ||| ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCAGAGAGTCAAGGCCCTGCTCACACTCAAAGAGCCTTTGTTCCC  341

seq1  C--AAGTGGAAAGC-AAAGTCCTCGCACTCAGAGAATTGACTGCAAACTT  388
      |  ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCAAAGTGGAAAGCAAAAGTCCTCGCACTCAGAGAATTGACTGCAAACTT  391

seq1  TTCCCTCGTGCCCTTGGCATCTCTGGTCCACTTGCCACTTGTCCCACAGC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCGTGCCCTTGGCATCTCTGGTCCACTTGCCACTTGTCCCACAGC  441

seq1  CTCTGGGGGTGACATCACACGCAGGTTCCGAATCAGGTGTGGGAAGGCAG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGGGTGACATCACACGCAGGTTCCGAATCAGGTGTGGGAAGGCAG  491

seq1  GTGAAAAGAGGGATCAAAGACTCACACTGCAGAGCCCTCGGCTCACTCGA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAGAGGGATCAAAGACTCACACTGCAGAGCCCTCGGCTCACTCGA  541

seq1  TGGGGCACAGATATCTTGTGGGGAGGCTGCTCTCTCTCTCTCTCTCTCTC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCACAGATATCTTGTGGGGAGGCTGCTCTCTCTCTCTCTCTCTCTC  591

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTG  641

seq1  TGTGTGTGTGTGTACAAATGTACATGCTAAGTGAACTGAGTCCCAGAAGA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTACAAATGTACATGCTAAGTGAACTGAGTCCCAGAAGA  691

seq1  GGAATTTGGCCGTGTTCTGCAAGCTTGCTTTCTGCAGATTATTTCTTTCT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTGGCCGTGTTCTGCAAGCTTGCTTTCTGCAGATTATTTCTTTCT  741

seq1  GGCTCTATTCATCCAATCACATTCTTTCCTTCCTGTCTCAGAGATGTAAG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTATTCATCCAATCACATTCTTTCCTTCCTGTCTCAGAGATGTAAG  791

seq1  ATGCTTGTGAGGCTAATCTGGGACATGGTATGTTGAGTTGGGGGGGGGCA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGTGAGGCTAATCTGGGACATGGTATGTTGAGTTGGGGGGGGGCA  841

seq1  GAGGTCAACAAGAAATCAACTTATCTAGGCCTCTGACTATAACCCAAGTG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCAACAAGAAATCAACTTATCTAGGCCTCTGACTATAACCCAAGTG  891

seq1  ATCCATGTATGCCAGGCCCCGTGTTTATCCTGATGTTCACTGAGTGACGG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGTATGCCAGGCCCCGTGTTTATCCTGATGTTCACTGAGTGACGG  941

seq1  ATCTCATATTCTCAGCCAGGGTCCATCATGTCCACACAATACACACTGGA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATATTCTCAGCCAGGGTCCATCATGTCCACACAATACACACTGGA  991

seq1  AGGCCTCAGCTCAGAGAGGCCAAGTGGCTAGCCCTTAGCCACCCGAGTGG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCAGCTCAGAGAGGCCAAGTGGCTAGCCCTTAGCCACCCGAGTGG  1041

seq1  TTAGTGGCAGACACAGGACCCAGTGTATATCTAGCTGATGTTGAAACTGG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGCAGACACAGGACCCAGTGTATATCTAGCTGATGTTGAAACTGG  1091

seq1  CTCTTGCCTGTGGCTGTTACCTTCGACAGGGCATCACACCCACCCAGGCC  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCCTGTGGCTGTTACCTTCGACAGGGCATCACACCCACCCAGGCC  1141

seq1  AAAGCCTAGAGAATTC  1154
      ||||||||||||||||
seq2  AAAGCCTAGAGAATTC  1157

seq1: chr4_47148323_47149480
seq2: B6Ng01-044J16.g_69_1208

seq1  GAATTCAAGGCCAGCCTGGTCTACATAGTGAGTTCTAGGAGAGTGAGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGCCTGGTCTACATAGTGAGTTCTAGGAGAGTGAGGAC  50

seq1  TATGTAGAAAGACCCTGTCTCAAAAAAAAACCAAAACAAAGCAAACAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGAAAGACCCTGTCTCAAAAAAAAACCAAAACAAAGCAAACAAAC  100

seq1  AAACCAAAAGAAAAGCCTTATGCCCAGTAAACACAGTCCATCCTCACGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAAGAAAAGCCTTATGCCCAGTAAACACAGTCCATCCTCACGGG  150

seq1  ATGCAGAATTAGGCCCCTGGGCTTACATGCACAAACTCATCTTGCACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAATTAGGCCCCTGGGCTTACATGCACAAACTCATCTTGCACCTT  200

seq1  CCAACTCCTGGGAGAAATGCCTCGACTAAGCTTTGATCGTATTTGCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCCTGGGAGAAATGCCTCGACTAAGCTTTGATCGTATTTGCCTCT  250

seq1  TGCTAGCTAGCTTGCTTTCTGCTTGCCTTTTTTTTGAGAGAGGGTCTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCTAGCTTGCTTTCTGCTTGCCTTTTTTTTGAGAGAGGGTCTCAT  300

seq1  GTAACCCCAGCTGACCACAAATTCCTGATTCTTCTGAGGGCTGTGATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCCCAGCTGACCACAAATTCCTGATTCTTCTGAGGGCTGTGATTAT  350

seq1  AGGTGTGTGTCACTACACCCGGCTGTCAACTTTGTCATACATGCCAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGTGTCACTACACCCGGCTGTCAACTTTGTCATACATGCCAAAGT  400

seq1  TTCTAACAATGATGAACACCATTTACTGTGTGTACTGCGTGTATGAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACAATGATGAACACCATTTACTGTGTGTACTGCGTGTATGAGACA  450

seq1  CCATGATGACTGACTTTCATACATTGAATTTTCATGACAACCTCACAACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATGACTGACTTTCATACATTGAATTTTCATGACAACCTCACAACG  500

seq1  GAAGTGTTTGTACATTATAGATGCATGCTTTCGTCATTTCATTTGAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTTTGTACATTATAGATGCATGCTTTCGTCATTTCATTTGAGAGT  550

seq1  TGGGGGATGTATACAGGCCAGAGGACAACTTGGAGGAGTAAGTTCTCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGATGTATACAGGCCAGAGGACAACTTGGAGGAGTAAGTTCTCTTC  600

seq1  TTCTCCCCGAGGTCTTGAGGATGGAAGCCATGACATCAAGCTTGCACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCCGAGGTCTTGAGGATGGAAGCCATGACATCAAGCTTGCACTTT  650

seq1  TTATGTACAGAGCCATCTTGCTGGCCCTGTCGTGTTTTTCTAGCTGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTACAGAGCCATCTTGCTGGCCCTGTCGTGTTTTTCTAGCTGAGGA  700

seq1  GAGATTGGTTCCCATCTGGGCTGAGGGATACTGAGTCTAATGAGATTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGGTTCCCATCTGGGCTGAGGGATACTGAGTCTAATGAGATTATA  750

seq1  GCCTTGTCTAATCTGGTCGCTTTGTCTCTTAATTTAGCCAGAGGAAACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTCTAATCTGGTCGCTTTGTCTCTTAATTTAGCCAGAGGAAACAG  800

seq1  CGTCTCTCAGGACAGCCTCGTCAGGCCTGGCTCTCAGATGCTGTACTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTCTCAGGACAGCCTCGTCAGGCCTGGCTCTCAGATGCTGTACTTTG  850

seq1  CAGGGCAAGCCTTGGCACCTATGCTTGGTGTACCTGCCTCACTCATTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAAGCCTTGGCACCTATGCTTGGTGTACCTGCCTCACTCATTCTG  900

seq1  GCTCCCAGGCACCTCTCCCCGCTTCTGAAAATCTCTCAGACATAGCTGGG  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCTCCCAGGCACCTCTCCCCGCTTCTG-AAATCTCTCAGACATAGCTGGG  949

seq1  CTCATTTAGAATTCCTGGAAATAATAGTTTTCAATCCCCCTGTCCAGTGT  1000
      ||||||||||||||||||||   |||||||   |||||||||| ||||||
seq2  CTCATTTAGAATTCCTGGAA--TATAGTTT--CATCCCCCTGT-CAGTGT  994

seq1  GCCTGTCATGTGCAGCCCCTAATACTTGGCTGCTATGATAGTGTAAGGCA  1050
      ||||||||||||||| |||||||||||||||||||||||||||||  |||
seq2  GCCTGTCATGTGCAG-CCCTAATACTTGGCTGCTATGATAGTGTA--GCA  1041

seq1  GTCTGCACTGGTGCCTGGGTTTCCTGTGCTCCTCAGCAAGCACAGTAGAA  1100
      ||||||||||| ||  |||||||   ||||||||||||||| ||||| ||
seq2  GTCTGCACTGG-GCTGGGGTTTC--TTGCTCCTCAGCAAGC-CAGTAAAA  1087

seq1  CAATGTACTAAGAGTAGAGCCCGTCTAAAGAGGGCCATTCTACCGAGTCT  1150
      |||||||||||||||| || ||||||| |   ||| |||| |||| ||||
seq2  CAATGTACTAAGAGTAAAG-CCGTCTAGA---GGCAATTCCACCG-GTCT  1132

seq1  GACATCTG  1158
      ||||||||
seq2  GACATCTG  1140