BAC Information

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BAC

Clone NameB6Ng01-044N15
Chromosome4 (Build37)
Map Location 34,326,743 - 34,411,602
singlet/doubletdoublet
Overlap geneLOC665361
Upstream genePnrc1, Rngtt, LOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220
Downstream geneLOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044N15.bB6Ng01-044N15.g
ACCDH870485DH870486
length1,1031,152
definitionDH870485|Mus musculus domesticus DNA, BAC clone: B6Ng01-044N15, 5' end.DH870486|Mus musculus domesticus DNA, BAC clone: B6Ng01-044N15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,410,499 - 34,411,602)(34,326,743 - 34,327,903)
sequence
gaattctcttcccccaaagtgtttcagttctataagacagacgcttccag
aaggtctttgatgatacaactccgcatgctttattcctactgttctcaga
tatgagagtacccggaccttaccaagttttttgtcttggggcacagtcca
ctaacccacacttaagcatcatggtgaggagcatgacaccaggcagacag
gcatggcactgcagttgcagcaaaaagattacatgttatcaacacacatg
aggcagagagagagagagagagagagagagagagagagagagagagagag
agcactaagagtgtcatggggttttgaaacctcaaagcccactcccagtg
acatacctccttcaacaaggtcataccttctaaaccctttccaaacaggt
ccactaactagggatcaagtacccaaacatattagcctatgagggccatt
ctcattcaaaacaccacacatatgtattttagggagctttatagtactgg
aactaaaggtcttttcaaaaagtgtttcctattaatgatctctccccgtt
ttcttcctctgccttgctctcccattcacctctgcatttaatcctattac
tctgatttcctggaaattttattttttaaaaagtaaatagtatgttcagt
gctttaaaaatattactgtacccaatattttcacatctctcaattctctg
tctgttctgagacttaaacccaggaccctacacatcctagagaagtgctc
taccattgaattatattttccaaacccttaggcttgttggtatcgaaatt
tcaccaggtatctcagactggaactcactattggccctcccaggcttgcc
ccagatctttctgtgtcagttttgcatgtgctggcatttcaagtcaccac
actcagcttggtatcttcttttttgtaggttaaaaacattaacatcttga
atttttggaatgctttgagaagtagtttatagtttgtagttttctgacat
ttacttctatgttttttgaatataggctgtccattgcttgtcttttttag
ggtttgactgctgggaacagacaccctgacccaggcaagtctttataagg
gat
gaattccaaataaaacacccccattgagtggcaaggctcaagtcattgtt
aggaaagaattttattttaaaagtgtcactttaaactgcaaggacgtctg
ttagacatcacaattaaacatgctaaagtagaagccatgttgtcaaatgc
ccacttaacacccccctccccccagacacctcaaacacatctttgctggc
cttctataccttccccctttttctttttcattaaacaagagaaagtagac
agatatacattgggaaatactgtctgtgttcacaaagaaacatagtgtaa
tctctgagcacaatatacagagaaaagaaaaaagctagaattctgtgtac
acaggggcccagcccctccagcctccagcagagccaaggtagctgaaggg
cttttcctttttcccacagagcacagtggtagtgttgaatccagttttga
aggcaagaaagggcataaatgaatttagaacagaaaagtggaaattgtat
ttccctcaagttattttccccaaaataagttgagcgccatggtgtcgaga
gaccacataaacagggtgactgagcacaagagtgacagggaggaaaatga
cttcaacttgctcccaggaactagagaaaattacaaaactaaaaagaagg
ctagaatacatcagtcttctgtgctggtcattctcaccttcatcctcctc
tccttcctccccttcatcttcatcttcaccttcatcttcatcttcttcac
cttcttcatcctcatcccctccttcatcaataccttacagctgctcctcc
tcctccacctcctcctcttcttcctcttcctcttcctcttcctcttcctc
ttcttcttcttcttcttcttcatggggaaccaaatagtactgaaagatat
ttgggccaaatatatctttgatggcctctcctaactcatctgtaccattt
tgtcgaatcctttccagatttccacttgatttcatggactttgagatggg
tcactactttcttcagattaatattctttgaagagaactttactttcaca
gtaggattttcatcaaataaaaaatctatttcttaaaccagatttgatgt
cttcaatcgtctttaacttggtgaaatattcaaagccctcttgccttcct
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_34410499_34411602
seq2: B6Ng01-044N15.b_46_1148 (reverse)

seq1  ATCCTTTAT-AAGACTTGCCTTGGTCATGGTGTCTGTTCACAGCAGTCAA  49
      |||| |||| ||||||||||| ||||| ||||||||||| ||||||||||
seq2  ATCCCTTATAAAGACTTGCCTGGGTCAGGGTGTCTGTTCCCAGCAGTCAA  50

seq1  ACCCTAAAAAAGACAAGCAAT-GACAGCATATTATTC-AAAAACATAGAA  97
      ||||||||||||||||||||| |||||| || ||||| ||||||||||||
seq2  ACCCTAAAAAAGACAAGCAATGGACAGCCTA-TATTCAAAAAACATAGAA  99

seq1  GTAAATGTCAGAAAACTACCAACTTATAAACTACTTCTCAAAGCATTCCA  147
      ||||||||||||||||||| ||| ||||||||||||||||||||||||||
seq2  GTAAATGTCAGAAAACTACAAAC-TATAAACTACTTCTCAAAGCATTCCA  148

seq1  AAAATTCAAGATGTTAATGTTTTTAACCTTACAAAAAAGGAAGATTACAA  197
      |||||||||||||||||||||||||||| ||||||||| ||||||  |||
seq2  AAAATTCAAGATGTTAATGTTTTTAACC-TACAAAAAA-GAAGATACCAA  196

seq1  GCTGAGTGTGGTGACTTGAAATGCCAGCACATGCAAAACTGACACAGAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTGTGGTGACTTGAAATGCCAGCACATGCAAAACTGACACAGAAA  246

seq1  GATCTGGGGCAAGCCTGGGAGGGCCAATAGTGAGTTCCAGTCTGAGATAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGGGGCAAGCCTGGGAGGGCCAATAGTGAGTTCCAGTCTGAGATAC  296

seq1  CTGGTGAAATTTCGATACCAACAAGCCTAAGGGTTTGGAAAATATAATTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGAAATTTCGATACCAACAAGCCTAAGGGTTTGGAAAATATAATTC  346

seq1  AATGGTAGAGCACTTCTCTAGGATGTGTAGGGTCCTGGGTTTAAGTCTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAGAGCACTTCTCTAGGATGTGTAGGGTCCTGGGTTTAAGTCTCA  396

seq1  GAACAGACAGAGAATTGAGAGATGTGAAAATATTGGGTACAGTAATATTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGACAGAGAATTGAGAGATGTGAAAATATTGGGTACAGTAATATTT  446

seq1  TTAAAGCACTGAACATACTATTTACTTTTTAAAAAATAAAATTTCCAGGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCACTGAACATACTATTTACTTTTTAAAAAATAAAATTTCCAGGA  496

seq1  AATCAGAGTAATAGGATTAAATGCAGAGGTGAATGGGAGAGCAAGGCAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAGTAATAGGATTAAATGCAGAGGTGAATGGGAGAGCAAGGCAGA  546

seq1  GGAAGAAAACGGGGAGAGATCATTAATAGGAAACACTTTTTGAAAAGACC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAACGGGGAGAGATCATTAATAGGAAACACTTTTTGAAAAGACC  596

seq1  TTTAGTTCCAGTACTATAAAGCTCCCTAAAATACATATGTGTGGTGTTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTCCAGTACTATAAAGCTCCCTAAAATACATATGTGTGGTGTTTT  646

seq1  GAATGAGAATGGCCCTCATAGGCTAATATGTTTGGGTACTTGATCCCTAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGAATGGCCCTCATAGGCTAATATGTTTGGGTACTTGATCCCTAG  696

seq1  TTAGTGGACCTGTTTGGAAAGGGTTTAGAAGGTATGACCTTGTTGAAGGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGACCTGTTTGGAAAGGGTTTAGAAGGTATGACCTTGTTGAAGGA  746

seq1  GGTATGTCACTGGGAGTGGGCTTTGAGGTTTCAAAACCCCATGACACTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTCACTGGGAGTGGGCTTTGAGGTTTCAAAACCCCATGACACTCT  796

seq1  TAGTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  846

seq1  TCTGCCTCATGTGTGTTGATAACATGTAATCTTTTTGCTGCAACTGCAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCATGTGTGTTGATAACATGTAATCTTTTTGCTGCAACTGCAGT  896

seq1  GCCATGCCTGTCTGCCTGGTGTCATGCTCCTCACCATGATGCTTAAGTGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGCCTGTCTGCCTGGTGTCATGCTCCTCACCATGATGCTTAAGTGT  946

seq1  GGGTTAGTGGACTGTGCCCCAAGACAAAAAACTTGGTAAGGTCCGGGTAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAGTGGACTGTGCCCCAAGACAAAAAACTTGGTAAGGTCCGGGTAC  996

seq1  TCTCATATCTGAGAACAGTAGGAATAAAGCATGCGGAGTTGTATCATCAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATATCTGAGAACAGTAGGAATAAAGCATGCGGAGTTGTATCATCAA  1046

seq1  AGACCTTCTGGAAGCGTCTGTCTTATAGAACTGAAACACTTTGGGGGAAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTCTGGAAGCGTCTGTCTTATAGAACTGAAACACTTTGGGGGAAG  1096

seq1  AGAATTC  1104
      |||||||
seq2  AGAATTC  1103

seq1: chr4_34326743_34327903
seq2: B6Ng01-044N15.g_68_1219

seq1  GAATTCCAAATAAAACACCCCCATTGAGTGGCAAGGCTCAAGTCATTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATAAAACACCCCCATTGAGTGGCAAGGCTCAAGTCATTGTT  50

seq1  AGGAAAGAATTTTATTTTAAAAGTGTCACTTTAAACTGCAAGGACGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGAATTTTATTTTAAAAGTGTCACTTTAAACTGCAAGGACGTCTG  100

seq1  TTAGACATCACAATTAAACATGCTAAAGTAGAAGCCATGTTGTCAAATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACATCACAATTAAACATGCTAAAGTAGAAGCCATGTTGTCAAATGC  150

seq1  CCACTTAACACCCCCCTCCCCCCAGACACCTCAAACACATCTTTGCTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTAACACCCCCCTCCCCCCAGACACCTCAAACACATCTTTGCTGGC  200

seq1  CTTCTATACCTTCCCCCTTTTTCTTTTTCATTAAACAAGAGAAAGTAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATACCTTCCCCCTTTTTCTTTTTCATTAAACAAGAGAAAGTAGAC  250

seq1  AGATATACATTGGGAAATACTGTCTGTGTTCACAAAGAAACATAGTGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATACATTGGGAAATACTGTCTGTGTTCACAAAGAAACATAGTGTAA  300

seq1  TCTCTGAGCACAATATACAGAGAAAAGAAAAAAGCTAGAATTCTGTGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGCACAATATACAGAGAAAAGAAAAAAGCTAGAATTCTGTGTAC  350

seq1  ACAGGGGCCCAGCCCCTCCAGCCTCCAGCAGAGCCAAGGTAGCTGAAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGGCCCAGCCCCTCCAGCCTCCAGCAGAGCCAAGGTAGCTGAAGGG  400

seq1  CTTTTCCTTTTTCCCACAGAGCACAGTGGTAGTGTTGAATCCAGTTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTTTTTCCCACAGAGCACAGTGGTAGTGTTGAATCCAGTTTTGA  450

seq1  AGGCAAGAAAGGGCATAAATGAATTTAGAACAGAAAAGTGGAAATTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGAAAGGGCATAAATGAATTTAGAACAGAAAAGTGGAAATTGTAT  500

seq1  TTCCCTCAAGTTATTTTCCCCAAAATAAGTTGAGCGCCATGGTGTCGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCAAGTTATTTTCCCCAAAATAAGTTGAGCGCCATGGTGTCGAGA  550

seq1  GACCACATAAACAGGGTGACTGAGCACAAGAGTGACAGGGAGGAAAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACATAAACAGGGTGACTGAGCACAAGAGTGACAGGGAGGAAAATGA  600

seq1  CTTCAACTTGCTCCCAGGAACTAGAGAAAATTACAAAACTAAAAAGAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACTTGCTCCCAGGAACTAGAGAAAATTACAAAACTAAAAAGAAGG  650

seq1  CTAGAATACATCAGTCTTCTGTGCTGGTCATTCTCACCTTCATCCTCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATACATCAGTCTTCTGTGCTGGTCATTCTCACCTTCATCCTCCTC  700

seq1  TCCTTCCTCCCCTTCATCTTCATCTTCACCTTCATCTTCATCTTCTTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTCCCCTTCATCTTCATCTTCACCTTCATCTTCATCTTCTTCAC  750

seq1  CTTCTTCATCCTCATCCCCTCCTTCATCAATACCTTACAGCTGCTCCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCATCCTCATCCCCTCCTTCATCAATACCTTACAGCTGCTCCTCC  800

seq1  TCCTCCTCCTCCTCCTCTTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTC  850
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCACCTCCTCCTCTTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTC  850

seq1  TTCTTCTTCTTCTTCTTCTTCATGGGGAACCAAATAGTACTGAAAGATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCTTCTTCTTCTTCATGGGGAACCAAATAGTACTGAAAGATAT  900

seq1  TT-GGCCAAATATATCTTTGATGGCCTCTCCTAACTCATCTGTACCATTT  949
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCCAAATATATCTTTGATGGCCTCTCCTAACTCATCTGTACCATTT  950

seq1  TGTCGAATCCTTTCCAGATTTCCACTTGATTTCCATGGACTTTGAAGATG  999
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  TGTCGAATCCTTTCCAGATTTCCACTTGATTT-CATGGACTTTG-AGATG  998

seq1  GGTCACTACTTTCATTCAGA-TAAAATTCTTTGAAGAGAACTTTACTTTC  1048
      ||||||||||||| |||||| ||| |||||||||||||||||||||||||
seq2  GGTCACTACTTTC-TTCAGATTAATATTCTTTGAAGAGAACTTTACTTTC  1047

seq1  ACAGTAAGGATTTTCATCAAAATAAAAAATCTA-TTCTTTAACCAGATTT  1097
      ||||| |||||||||||| |||||||||||||| ||||| ||||||||||
seq2  ACAGT-AGGATTTTCATC-AAATAAAAAATCTATTTCTTAAACCAGATTT  1095

seq1  GATGTCTTCAAATTCTGTCCTTTAAACTCTGGTGAAATAATTCAGAGCCT  1147
      |||||||||||  || |||  || |||| ||||||||| ||||| |||| 
seq2  GATGTCTTCAA--TC-GTC--TTTAACT-TGGTGAAAT-ATTCAAAGCCC  1138

seq1  CTTTGCCTTCCTTC  1161
        ||||||||||||
seq2  TCTTGCCTTCCTTC  1152