BAC Information

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BAC

Clone NameB6Ng01-044O23
Chromosome4 (Build37)
Map Location 102,470,431 - 102,561,240
singlet/doubletdoublet
Overlap geneSgip1
Upstream geneLepr, B020004J07Rik, LOC665362, C130073F10Rik, LOC384033, LOC381535, LOC332923, LOC100039834, LOC381536, LOC433739, Pde4b
Downstream geneTctex1d1, Insl5, Wdr78, Mier1, Slc35d1, 4921539E11Rik, 4930456L15Rik, Oma1, LOC665451, LOC100039940, EG665460
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044O23.bB6Ng01-044O23.g
ACCDH870543DH870544
length1,1021,163
definitionDH870543|Mus musculus domesticus DNA, BAC clone: B6Ng01-044O23, 5' end.DH870544|Mus musculus domesticus DNA, BAC clone: B6Ng01-044O23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,560,131 - 102,561,240)(102,470,431 - 102,471,497)
sequence
gaattcaatggggtgctgaaccttctgccaaagcgaagacagggaagggg
gcggtgttaccaagcagcagcaaatttgtggagtttgctccctggcaggg
taatttgggggcggaaggtgggtgggccacctggaatcggcaatgagcac
cagactgtctacagttcaaagcttatctcccccagcctcagagctttcga
taaataattccgttatggagtgcacgtgtccaagaacaagctcaaactac
ccaaatcattccatcatactcagtaacgcatacgacaatgcctccgagat
tctcagggttgggggaagaggtacaaacctaactcttaactgcctcgtat
tctcatctattctacagaactatttttgacttcacacaaatccttcctgg
ctatttttatttccttctgtctcccacaagtctctcaactaagggaaaag
gaaaagtgccgctgaagggatctaattacccagaagcccctgctggctgc
tcaggcacacctggacatttctcatgtcctcttgtaactctgacctcaac
cctaagaagactgctactattgtgttcctgttttacaaaccggaaaacag
agactcccagttaaggaactcagccaggatacacagactgtggccagggt
tcttctcacatgctcttggtcttcagagggtgagctggagatgtagtctg
gaggcagagcttacacacccaatctgctcccacagcagagtgtttcccat
aatgacaaggaggccagcataggacagtgctaagctgagagcaaccttaa
agagagctggctctgtagttcacaaaacattgggctttaatccgtttagc
caagcaaaaaatgggtcagacactagagtttgggtcttgctccttagacc
tccatcagtctcttggttttctgcattaggtcattgtgaaatggggctgc
ccaacactgccgaagctcattcagattttagaccatgactgggcattata
aatgtaagcctgaattgtatgtactcgtgacgcagaaatacttatcactg
atgaactgactggggcagctgaaacagaggtgtcagtcttacactgaaaa
ca
gaattctttttatacaaggtctgattccatgaacagattacatctatatc
attgaggagtttttaaatctatatttgtaagaaatactggcttgtagagt
tttatatattatatattatatatatataatgtccttgtttggagtttttc
gttaattatagccttataaattagttaagatcattcatctacttctattt
tgtgaaatagatgctaaagaatttatatgatttcttccttctatgctcag
tagatttcactagtgagtctctgtgggttataatgcattcttttttgaaa
gttaataattactagttcaatttccttaatacatatacctgtccagatta
tctttctgttcttacatgagttttggcagcttacacctttcaaggaattg
gtgcatttcatcttagatatcagatctggagcactgttacgcatgttgtt
cctttattaccctgtaaatacccatgatattctgtcttatacctgttact
ttatcatctacatcatcactctttttttcttatcttagccatgggattac
ttttgatcttattaaaatactagctttggttttgttgccagattatttct
aggaaccatctgaaacttcctttttgagaccaagaaaaccccaagtgttt
tgaaaattgattcttatgttcctataatccaagcatgcatctcagggaat
aaagttatatttttttcctagaatgtactgtttgggaatttattccaatg
ttaagcatttgcctgagagtactcaccattagctatcactaggtctaaac
taaatttaaagaaaggtccgttttgtctccctcactatctctggtgtcag
tgtgaacacccaactagttctctgccttagaattcccagctgtgtatatg
cagccactctcgaatactaattgtgtatacttaacaattatctatgagta
tgtactccatgctaagcattgtaataggctttgggaactgagaattgagc
aatgacttacttaattacctgcttgttgtagagctgttatcgtagtttca
agtctttcatcacctgtttactcctccttgattctgaaacttctggtaat
tccaagcttcaatattctaatttaagaattattcttatccttatcctttt
atatagacattac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_102560131_102561240
seq2: B6Ng01-044O23.b_44_1145 (reverse)

seq1  TGTTTTCAGTGGTAAAAGACTGACACCTCTTGTTTCAGCTGCCCCAGTCA  50
      |||||||||||    |||||||||||||| ||||||||||||||||||||
seq2  TGTTTTCAGTG---TAAGACTGACACCTC-TGTTTCAGCTGCCCCAGTCA  46

seq1  GTTCATCAGTGATAAGTATTTCTGCGTCACGAGTACATTACAA-TCAGGC  99
      ||||||||||||||||||||||||||||||||||||| ||||| ||||| 
seq2  GTTCATCAGTGATAAGTATTTCTGCGTCACGAGTACA-TACAATTCAGG-  94

seq1  CTTACATTTTGTAAATGCCCAGTCATGGTCTAAAATCTGAATGAGCTTCG  149
      |||||||||    |||||||||||||||||||||||||||||||||||||
seq2  CTTACATTT--ATAATGCCCAGTCATGGTCTAAAATCTGAATGAGCTTCG  142

seq1  GCAGTGTTGGGCAGCCCCATTTCACAATGAACCTAATGCAGAAAAACCAA  199
      ||||||||||||||||||||||||||||| ||||||||||| ||||||||
seq2  GCAGTGTTGGGCAGCCCCATTTCACAATG-ACCTAATGCAG-AAAACCAA  190

seq1  GAGACTGATGGAGGTCTAAGGAGCAAGACCCAAACTCTAGTGTCTGACCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGATGGAGGTCTAAGGAGCAAGACCCAAACTCTAGTGTCTGACCC  240

seq1  ATTTTTTGCTTGGCTAAACGGATTAAAG-CCAATGTTTTGTGAACTACAG  298
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTTTTTGCTTGGCTAAACGGATTAAAGCCCAATGTTTTGTGAACTACAG  290

seq1  AGCCAGCTCTCTTTAAGGTTGCTCTCAGCTTAGCACTGTCCTATGCTGGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCTCTCTTTAAGGTTGCTCTCAGCTTAGCACTGTCCTATGCTGGC  340

seq1  CTCCTTGTCATTATGGGAAACACTCTGCTGTGGGAGCAGATTGGGTGTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGTCATTATGGGAAACACTCTGCTGTGGGAGCAGATTGGGTGTGT  390

seq1  AAGCTCTGCCTCCAGACTACATCTCCAGCTCACCCTCTGAAGACCAAGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTGCCTCCAGACTACATCTCCAGCTCACCCTCTGAAGACCAAGAG  440

seq1  CATGTGAGAAGAACCCTGGCCACAGTCTGTGTATCCTGGCTGAGTTCCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGAGAAGAACCCTGGCCACAGTCTGTGTATCCTGGCTGAGTTCCTT  490

seq1  AACTGGGAGTCTCTGTTTTCCGGTTTGTAAAACAGGAACACAATAGTAGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGAGTCTCTGTTTTCCGGTTTGTAAAACAGGAACACAATAGTAGC  540

seq1  AGTCTTCTTAGGGTTGAGGTCAGAGTTACAAGAGGACATGAGAAATGTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCTTAGGGTTGAGGTCAGAGTTACAAGAGGACATGAGAAATGTCC  590

seq1  AGGTGTGCCTGAGCAGCCAGCAGGGGCTTCTGGGTAATTAGATCCCTTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGCCTGAGCAGCCAGCAGGGGCTTCTGGGTAATTAGATCCCTTCA  640

seq1  GCGGCACTTTTCCTTTTCCCTTAGTTGAGAGACTTGTGGGAGACAGAAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCACTTTTCCTTTTCCCTTAGTTGAGAGACTTGTGGGAGACAGAAGG  690

seq1  AAATAAAAATAGCCAGGAAGGATTTGTGTGAAGTCAAAAATAGTTCTGTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAATAGCCAGGAAGGATTTGTGTGAAGTCAAAAATAGTTCTGTA  740

seq1  GAATAGATGAGAATACGAGGCAGTTAAGAGTTAGGTTTGTACCTCTTCCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGATGAGAATACGAGGCAGTTAAGAGTTAGGTTTGTACCTCTTCCC  790

seq1  CCAACCCTGAGAATCTCGGAGGCATTGTCGTATGCGTTACTGAGTATGAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCTGAGAATCTCGGAGGCATTGTCGTATGCGTTACTGAGTATGAT  840

seq1  GGAATGATTTGGGTAGTTTGAGCTTGTTCTTGGACACGTGCACTCCATAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGATTTGGGTAGTTTGAGCTTGTTCTTGGACACGTGCACTCCATAA  890

seq1  CGGAATTATTTATCGAAAGCTCTGAGGCTGGGGGAGATAAGCTTTGAACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAATTATTTATCGAAAGCTCTGAGGCTGGGGGAGATAAGCTTTGAACT  940

seq1  GTAGACAGTCTGGTGCTCATTGCCGATTCCAGGTGGCCCACCCACCTTCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACAGTCTGGTGCTCATTGCCGATTCCAGGTGGCCCACCCACCTTCC  990

seq1  GCCCCCAAATTACCCTGCCAGGGAGCAAACTCCACAAATTTGCTGCTGCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCAAATTACCCTGCCAGGGAGCAAACTCCACAAATTTGCTGCTGCT  1040

seq1  TGGTAACACCGCCCCCTTCCCTGTCTTCGCTTTGGCAGAAGGTTCAGCAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAACACCGCCCCCTTCCCTGTCTTCGCTTTGGCAGAAGGTTCAGCAC  1090

seq1  CCCATTGAATTC  1110
      ||||||||||||
seq2  CCCATTGAATTC  1102

seq1: chr4_102470431_102471497
seq2: B6Ng01-044O23.g_171_1231

seq1  TATATATTATATATTATATATATATAATGTCCTTGTTTGGAGTTTTTCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTATATATTATATATATATAATGTCCTTGTTTGGAGTTTTTCGT  50

seq1  TAATTATAGCCTTATAAATTAGTTAAGATCATTCATCTACTTCTATTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATAGCCTTATAAATTAGTTAAGATCATTCATCTACTTCTATTTTG  100

seq1  TGAAATAGATGCTAAAGAATTTATATGATTTCTTCCTTCTATGCTCAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAGATGCTAAAGAATTTATATGATTTCTTCCTTCTATGCTCAGTA  150

seq1  GATTTCACTAGTGAGTCTCTGTGGGTTATAATGCATTCTTTTTTGAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCACTAGTGAGTCTCTGTGGGTTATAATGCATTCTTTTTTGAAAGT  200

seq1  TAATAATTACTAGTTCAATTTCCTTAATACATATACCTGTCCAGATTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTACTAGTTCAATTTCCTTAATACATATACCTGTCCAGATTATC  250

seq1  TTTCTGTTCTTACATGAGTTTTGGCAGCTTACACCTTTCAAGGAATTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTCTTACATGAGTTTTGGCAGCTTACACCTTTCAAGGAATTGGT  300

seq1  GCATTTCATCTTAGATATCAGATCTGGAGCACTGTTACGCATGTTGTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCATCTTAGATATCAGATCTGGAGCACTGTTACGCATGTTGTTCC  350

seq1  TTTATTACCCTGTAAATACCCATGATATTCTGTCTTATACCTGTTACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTACCCTGTAAATACCCATGATATTCTGTCTTATACCTGTTACTTT  400

seq1  ATCATCTACATCATCACTCTTTTTTTCTTATCTTAGCCATGGGATTACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTACATCATCACTCTTTTTTTCTTATCTTAGCCATGGGATTACTT  450

seq1  TTGATCTTATTAAAATACTAGCTTTGGTTTTGTTGCCAGATTATTTCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTTATTAAAATACTAGCTTTGGTTTTGTTGCCAGATTATTTCTAG  500

seq1  GAACCATCTGAAACTTCCTTTTTGAGACCAAGAAAACCCCAAGTGTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATCTGAAACTTCCTTTTTGAGACCAAGAAAACCCCAAGTGTTTTG  550

seq1  AAAATTGATTCTTATGTTCCTATAATCCAAGCATGCATCTCAGGGAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGATTCTTATGTTCCTATAATCCAAGCATGCATCTCAGGGAATAA  600

seq1  AGTTATATTTTTTTCCTAGAATGTACTGTTTGGGAATTTATTCCAATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATATTTTTTTCCTAGAATGTACTGTTTGGGAATTTATTCCAATGTT  650

seq1  AAGCATTTGCCTGAGAGTACTCACCATTAGCTATCACTAGGTCTAAACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTGCCTGAGAGTACTCACCATTAGCTATCACTAGGTCTAAACTA  700

seq1  AATTTAAAGAAAGGTCCGTTTTGTCTCCCTCACTATCTCTGGTGTCAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAGAAAGGTCCGTTTTGTCTCCCTCACTATCTCTGGTGTCAGTG  750

seq1  TGAACACCCAACTAGTTCTCTGCCTTAGAATTCCCAGCTGTGTATATGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACCCAACTAGTTCTCTGCCTTAGAATTCCCAGCTGTGTATATGCA  800

seq1  GCCACTCTCGAAATACTAATTGTGTATACTTAACAAATATCTATTGAGTA  850
      |||||||||| ||||||||||||||||||||||||| |||||| ||||||
seq2  GCCACTCTCG-AATACTAATTGTGTATACTTAACAATTATCTA-TGAGTA  848

seq1  TGTACTCCATGCTAAGCATTGTAATAGGCTTTGGGAACTGAGAATTGAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCCATGCTAAGCATTGTAATAGGCTTTGGGAACTGAGAATTGAGC  898

seq1  AATGAC-TACCTAATTACCTGC-TGTTGTAGAGCCTGTATCGTAGTTTCA  948
      |||||| ||| ||||||||||| |||||||||||   |||||||||||||
seq2  AATGACTTACTTAATTACCTGCTTGTTGTAGAGCTGTTATCGTAGTTTCA  948

seq1  AGTC-CTCATCACCTGTTTACT-CTCCTTGATTCTTGAAACTTCTGGTAA  996
      ||||  |||||||||||||||| ||||||||||| |||||||||||||||
seq2  AGTCTTTCATCACCTGTTTACTCCTCCTTGATTC-TGAAACTTCTGGTAA  997

seq1  ATTTCCAATCTTTCAATAATTCT-ATTTTAGAATTATTTCTATCCCTTAT  1045
        |||||| | |||||| ||||| |||| |||||||||  ||| ||||| 
seq2  --TTCCAAGC-TTCAAT-ATTCTAATTTAAGAATTATTCTTAT-CCTTA-  1041

seq1  CTCTTTTTATATAGGACATTAC  1067
       || ||||||||| ||||||||
seq2  -TCCTTTTATATA-GACATTAC  1061