BAC Information

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BAC

Clone NameB6Ng01-045C18
Chromosome4 (Build37)
Map Location 115,425,665 - 115,578,848
singlet/doubletdoublet
Overlap gene4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik
Upstream geneFoxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843
Downstream geneDmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045C18.bB6Ng01-045C18.g
ACCDH870706DH870707
length979755
definitionDH870706|Mus musculus domesticus DNA, BAC clone: B6Ng01-045C18, 5' end.DH870707|Mus musculus domesticus DNA, BAC clone: B6Ng01-045C18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,425,665 - 115,426,650)(115,578,097 - 115,578,848)
sequence
gaattctggcaccttgagagttcccttcgaaaacctggtatttgaaatca
gctgcttcaaaagagtggtgtagtataccattgtgttctatggagtacaa
actttggtaattaggcccttagtttttaacaggttactttatggttcata
tggtttttcatttgtccatctgggtttcagaattgctcttctgggaccat
tgtgttagcaggtggtggtttatacgtttcagtttgccgttacacttcat
gaccagttatgggtgagagttactttaaacctctgcttttctgctttgtt
ttgttttgctgtttaaagatgatctaaaataaatgctgaagttaaaaatt
aggtagcaggttgtgacaagggtacttttaaacactctgggatgtaaact
gaaaaaagaattactttggaaacaagtgggtattattttctaaaggcgtt
tgtataagtcctaaacaattacttgtgtgtccaccatagaccccagggct
gtgtgcaaagagcagtgcatagtttctgtttatttgacccctggtatgta
gacgtagcagacaaatctcagccagaaggatgagagcaaggaatgcctag
agctggacagagagtgaaaagaggtgggagggaacagatttctcatttga
acatggggaccatcatctcacaacaagaaatgaaggaaaggtgttaggaa
ttaagagccccttgcacagtgaattttaaatctaggattcatggctttta
aaagttagcctgtgttgtttgattcaattatattccagactctgtccata
aatgtctaaattgttatacaacgtgagaaattctaaactacaaacaaaat
aaacctgatgttttacaacacaatattgtgtgtccgtccctgtgatttgc
tacttgtcagtatggtcatctgctctcagggttcaataaaatgtcgaggc
agctttaatgagacagataacttaccgtt
gaattcagcctgggctaagtactgagaccttgtttcaaagggaacacaga
cgataaagatattaaaacagtgcgtgggttcagggtttagctcaagagac
cagcagaatgaccgaacccacagttagagatgaacagacagatctacagc
caggtaaacagaccgtggggagagaggctggtccaggcctgcaggcagga
tggaagcttcagggacagaaagaatgaagaagggaggcaggatctattaa
gctgatgactccaggccttaatcctgtgccaggcccattcgggcagtgta
tgtagggggaggggagcaccccccgctggggtgtaatttcacgctgaagg
gcctgatggggcatcccatggactgatcctttctggatcagaaaacccac
ttccctttgtcgcatgcagggcgattagcgccttaaccctttgtaggctg
gctcagggccagttctgccccaccttgcctcctgtccctggggacctagc
ccagagtccttctttgctctcagcctatccaactcttagatctggccctg
tatctctgtgtgtgtgaagcttcctgagtagggaaggcctaagaagacca
gggaatagattctagaacaatttctgtccacgtccctgttctctggcacc
ctacttcctctgactgctttttactgccacaaaatggcgaccccatatgt
ggggtcctcctttttattacattttaatttattttagtggtgtatgtggg
tgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_115425665_115426650
seq2: B6Ng01-045C18.b_41_1019

seq1  GAATTCTGGCACCTTGAGAGTTCCCTTCGAAAACCTGGTATTTGAAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCACCTTGAGAGTTCCCTTCGAAAACCTGGTATTTGAAATCA  50

seq1  GCTGCTTCAAAAGAGTGGTGTAGTATACCATTGTGTTCTATGGAGTACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTCAAAAGAGTGGTGTAGTATACCATTGTGTTCTATGGAGTACAA  100

seq1  ACTTTGGTAATTAGGCCCTTAGTTTTTAACAGGTTACTTTATGGTTCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGTAATTAGGCCCTTAGTTTTTAACAGGTTACTTTATGGTTCATA  150

seq1  TGGTTTTTCATTTGTCCATCTGGGTTTCAGAATTGCTCTTCTGGGACCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTCATTTGTCCATCTGGGTTTCAGAATTGCTCTTCTGGGACCAT  200

seq1  TGTGTTAGCAGGTGGTGGTTTATACGTTTCAGTTTGCCGTTACACTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTAGCAGGTGGTGGTTTATACGTTTCAGTTTGCCGTTACACTTCAT  250

seq1  GACCAGTTATGGGTGAGAGTTACTTTAAACCTCTGCTTTTCTGCTTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGTTATGGGTGAGAGTTACTTTAAACCTCTGCTTTTCTGCTTTGTT  300

seq1  TTGTTTTGCTGTTTAAAGATGATCTAAAATAAATGCTGAAGTTAAAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGCTGTTTAAAGATGATCTAAAATAAATGCTGAAGTTAAAAATT  350

seq1  AGGTAGCAGGTTGTGACAAGGGTACTTTTAAACACTCTGGGATGTAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCAGGTTGTGACAAGGGTACTTTTAAACACTCTGGGATGTAAACT  400

seq1  GAAAAAAGAATTACTTTGGAAACAAGTGGGTATTATTTTCTAAAGGCGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGAATTACTTTGGAAACAAGTGGGTATTATTTTCTAAAGGCGTT  450

seq1  TGTATAAGTCCTAAACAATTACTTGTGTGTCCACCATAGACCCCAGGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAGTCCTAAACAATTACTTGTGTGTCCACCATAGACCCCAGGGCT  500

seq1  GTGTGCAAAGAGCAGTGCATAGTTTCTGTTTATTTGACCCCTGGTATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAAAGAGCAGTGCATAGTTTCTGTTTATTTGACCCCTGGTATGTA  550

seq1  GACGTAGCAGACAAATCTCAGCCAGAAGGATGAGAGCAAGGAATGCCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTAGCAGACAAATCTCAGCCAGAAGGATGAGAGCAAGGAATGCCTAG  600

seq1  AGCTGGACAGAGAGTGAAAAGAGGTGGGAGGGAACAGATTTCTCA-TTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGCTGGACAGAGAGTGAAAAGAGGTGGGAGGGAACAGATTTCTCATTTGA  650

seq1  ACAGGGGGACCATCATCTCACAACAAGAAATGAAGGAAAGGTTGTTAGGA  699
      ||| ||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACATGGGGACCATCATCTCACAACAAGAAATGAAGGAAAGG-TGTTAGGA  699

seq1  ATTAAGAGCCCCTTGCACAGTGAATTTTAAATCTAGGATTCATGGCTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAGCCCCTTGCACAGTGAATTTTAAATCTAGGATTCATGGCTTTT  749

seq1  AAAAGTTAGCCTGTGTTGTTTGATTCAATTATATTCCAGACTCTGTCCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTAGCCTGTGTTGTTTGATTCAATTATATTCCAGACTCTGTCCAT  799

seq1  AAATGTCTAAATTGTTATACAACGTGAGAAATTTCTAAACCACAAACAAA  849
      ||||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  AAATGTCTAAATTGTTATACAACGTGAGAAA-TTCTAAACTACAAACAAA  848

seq1  AATAAAACCTGATGTTTTACAACCACAATATTGTGTGTCCGTCCCTGTGA  899
      |   |||||||||||||||||| |||||||||||||||||||||||||||
seq2  A--TAAACCTGATGTTTTACAA-CACAATATTGTGTGTCCGTCCCTGTGA  895

seq1  TTTGCTACTTGTCCAGTATGGTCATCTGCTCTCAGGGTTTCAATTAAAAA  949
      |||||||||||| |||||||||||||||||||||||| ||||||  ||||
seq2  TTTGCTACTTGT-CAGTATGGTCATCTGCTCTCAGGG-TTCAAT--AAAA  941

seq1  GGTCGAGGCAGCTTTAATGAGACAGAT-ACTTACCGTT  986
       |||||||||||||||||||||||||| ||||||||||
seq2  TGTCGAGGCAGCTTTAATGAGACAGATAACTTACCGTT  979

seq1: chr4_115578097_115578848
seq2: B6Ng01-045C18.g_67_821 (reverse)

seq1  ACCCACCCACATACA-CACT-AAATAAATTAAAATGTAAT-AAAAGGAGG  47
      ||||||||||||||| |||| ||||||||||||||||||| |||||||||
seq2  ACCCACCCACATACACCACTAAAATAAATTAAAATGTAATAAAAAGGAGG  50

seq1  ACCCCACATATGGGGTCGCCATTTTGCTGGCAGT-AAAAGCAGTCAGAGG  96
      |||||||||||||||||||||||||| ||||||| |||||||||||||||
seq2  ACCCCACATATGGGGTCGCCATTTTG-TGGCAGTAAAAAGCAGTCAGAGG  99

seq1  AAGTAGGGTGCCAGAGAACAGGGACGTGGACAGAAATTGTTCTAGAATCT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGGTGCCAGAGAACAGGGACGTGGACAGAAATTGTTCTAGAATCT  149

seq1  ATTCCCTGGTCTTCTTAGGCCTTCCCTACTCAGGAAGCTTCACACACACA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTGGTCTTCTTAGGCCTTCCCTACTCAGGAAGCTTCACACACACA  199

seq1  GAGATACAGGGCCAGATCTAAGAGTTGGATAGGCTGAGAGCAAAGAAGGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATACAGGGCCAGATCTAAGAGTTGGATAGGCTGAGAGCAAAGAAGGA  249

seq1  CTCTGGGCTAGGTCCCCAGGGACAGGAGGCAAGGTGGGGCAGAACTGGCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGCTAGGTCCCCAGGGACAGGAGGCAAGGTGGGGCAGAACTGGCC  299

seq1  CTGAGCCAGCCTACAAAGGGTTAAGGCGCTAATCGCCCTGCATGCGACAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCAGCCTACAAAGGGTTAAGGCGCTAATCGCCCTGCATGCGACAA  349

seq1  AGGGAAGTGGGTTTTCTGATCCAGAAAGGATCAGTCCATGGGATGCCCCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGTGGGTTTTCTGATCCAGAAAGGATCAGTCCATGGGATGCCCCA  399

seq1  TCAGGCCCTTCAGCGTGAAATTACACCCCAGCGGGGGGTGCTCCCCTCCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCCTTCAGCGTGAAATTACACCCCAGCGGGGGGTGCTCCCCTCCC  449

seq1  CCTACATACACTGCCCGAATGGGCCTGGCACAGGATTAAGGCCTGGAGTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATACACTGCCCGAATGGGCCTGGCACAGGATTAAGGCCTGGAGTC  499

seq1  ATCAGCTTAATAGATCCTGCCTCCCTTCTTCATTCTTTCTGTCCCTGAAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTTAATAGATCCTGCCTCCCTTCTTCATTCTTTCTGTCCCTGAAG  549

seq1  CTTCCATCCTGCCTGCAGGCCTGGACCAGCCTCTCTCCCCACGGTCTGTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATCCTGCCTGCAGGCCTGGACCAGCCTCTCTCCCCACGGTCTGTT  599

seq1  TACCTGGCTGTAGATCTGTCTGTTCATCTCTAACTGTGGGTTCGGTCATT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGCTGTAGATCTGTCTGTTCATCTCTAACTGTGGGTTCGGTCATT  649

seq1  CTGCTGGTCTCTTGAGCTAAACCCTGAACCCACGCACTGTTTTAATATCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGTCTCTTGAGCTAAACCCTGAACCCACGCACTGTTTTAATATCT  699

seq1  TTATCGTCTGTGTTCCCTTTGAAACAAGGTCTCAGTACTTAGCCCAGGCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCGTCTGTGTTCCCTTTGAAACAAGGTCTCAGTACTTAGCCCAGGCT  749

seq1  GAATTC  752
      ||||||
seq2  GAATTC  755