BAC Information

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BAC

Clone NameB6Ng01-045E03
ChromosomeX (Build37)4 (Build37)
Map Location 55,022,554 - 55,023,549146,958,061 - 146,958,709
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneFhl1, Mtap7d3, Gpr112, Brs3, Htatsf1, Vgll1, Cd40lg, Arhgef6, Rbmx, Snord61, Gm364, Gpr101, Aldoa-ps, EG666441, LOC666447
Downstream geneZic3, LOC631581, LOC631621
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045E03.bB6Ng01-045E03.g
ACCDH870768DH870769
length9931,068
definitionDH870768|Mus musculus domesticus DNA, BAC clone: B6Ng01-045E03, 5' end.DH870769|Mus musculus domesticus DNA, BAC clone: B6Ng01-045E03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(55,022,554 - 55,023,549)(146,958,061 - 146,958,709)
sequence
gaattctactctgtactggttttggtttaattggcccccaatcaaaaatc
aaattattcatattttcaccatcagtatttatttttcagtccctgaaact
aactctctctctctctctctctctctctccatatgtaaagagtttgcttt
ttggaattgtgtagaattacctttgaaaagaaagttttgtttaattccat
caggatttctgtacttcttgcttgtttttataatgagaggccagaatgcc
cctttgattcttcaggcagagttccagtaagattatggaggaagaaacaa
aacaaaacaaaacaaaaaaaaaacccaaaatttgtgatagaaacccccca
ccgactgtgcccgtaggcaaactggtctgtaaaaattaaataccacatcg
gatgcaaaacccctctgtagagttttcaaaggacatcgttccaggaaaca
gatcagcggtccttgcagctgggatttccctgacccctttcagaataacc
cctaggagacctttagtgcttcaggtcatttcataagctctctttagcta
actatttgcttctaaggaaaggtgacttgcaaaccccacaaaaatatgct
gtgagatggaaggatgggccaagtttttaagcattagtaaattgactttg
ggaggaaaagttgaaagcagaaatggtctttgtggcctactaatacacaa
tcttgtcataagaaaggccaggcaaaggagctaaaaatcatatatcagaa
cttgacccagttcatactttgttgtttattctgatcttataaaaattacg
accatgtaaaagcatgaaatattttagacccaaagctaagcctctaaaag
catagcctgagttcacagcaaaaacccgcatcatcagcaatgtgattatt
acattttcagatcatagacatccaggcttactgttattccaaaagtgtac
tgcatctggtacatccacatttttgccagatggcaggatctga
gaattctccatcgggatcctcaggcagcagaagaagactgtgtgccacac
ggggtggagagtgagcacaggaaacctcaaagcttgcctccacagtgaca
cacttcctccaaaatgagcacacccccttatagtgacactccctatgggc
caagcatttacacacatgagtgtatgggggccattcctattcaaaccacc
acactgaagaaacacgtggttgagttacaaagagaagctgatgaaattag
caggggagggctagttgggaagaggaagaggatcagtgggaggagaaggg
aaccaagggaggttgatggatgtaaatttcatcaaaaaattcatatagga
tagaaaccttaccaatgtggtgaatgtgacaaatgctttactggaaaagg
cagtctgagaattcatcatagaattcatacaggagagagacctcactaat
gtagtgaatgtgacaaatgctttactggaaaaggcagtctgagaattcat
cagagaatgcatacaggagagaaaccttacaagtgtagtgaatgtgacaa
atgctttacccaaaaatcccatcttaatattcatcagggaattcatacag
gagagaaaccttacaaatgcagtgaatgtgacaaatgctttacccacaaa
tcccatcttattaatcatcagaaaattcatacaggagagaaaccttacaa
atagtttacatgtgacaaaatacaatactcacaatgtcagtctgagaaat
catgaatttttttcatacagtagagaatatttataaatgaagtgaacgag
acaatcctttaccaggatatatcatctaaaattcattagagaatagttag
agaagacacacttttcaatatattgtagtatgaatccttttttttttttt
tttttggcctatttctaaactgtaacagtgattattatcaggcttagaac
tttactcttgcttgtttgaagaaatttctttgacttcctttcggaagaga
gaacatctaaaaaactttttttagggtaagaatttctgttggggaaaaag
tgggctaaggttttattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_55022554_55023549
seq2: B6Ng01-045E03.b_38_1030 (reverse)

seq1  TCAGATCCTGCCATTTTGACAAAATGTTGATGTGACCAGATGCTGTACAC  50
      |||||||||||||| | |  ||||||| ||||| ||||||||| ||||||
seq2  TCAGATCCTGCCATCTGGCAAAAATGTGGATGT-ACCAGATGCAGTACAC  49

seq1  TTTTGGAATAACAGTAAGCCTGGATGTCTATGATCTGAAAATGTAATTAA  100
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTTGGAATAACAGTAAGCCTGGATGTCTATGATCTGAAAATGTAA-TAA  98

seq1  TCACATTGCTGATGATGAGGGTTTTTGCTGTGAACTCAGGCTATGCTTTT  150
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCACATTGCTGATGATGCGGGTTTTTGCTGTGAACTCAGGCTATGCTTTT  148

seq1  AGAGGCTTTGCTTTGGGTCTAAAATATTGCCCTGCTTTTACATGGTCGTA  200
      |||||||| |||||||||||||||||||  | ||||||||||||||||||
seq2  AGAGGCTTAGCTTTGGGTCTAAAATATT-TCATGCTTTTACATGGTCGTA  197

seq1  ATTTTTATAAGATCAGAATAAACAACAAAGTATGAACTGGGTCAAGTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATTTTTATAAGATCAGAATAAACAACAAAGTATGAACTGGGTCAAGTTCT  247

seq1  GATATATGATTTTTAGCTCCTTTGCCTGGCCTTTCTTATGACAAGATTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATGATTTTTAGCTCCTTTGCCTGGCCTTTCTTATGACAAGATTGT  297

seq1  GTATTAGTAGGCCACAAAGACCATTTCTGCTTTCAACTTTTCCTCCCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAGTAGGCCACAAAGACCATTTCTGCTTTCAACTTTTCCTCCCAAA  347

seq1  GTCAATTTACTAATGCTTAAAAACTTGGCCCATCCTTCCATCTCACAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTTACTAATGCTTAAAAACTTGGCCCATCCTTCCATCTCACAGCA  397

seq1  TATTTTTGTGGGGTTTGCAAGTCACCTTTCCTTAGAAGCAAATAGTTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGTGGGGTTTGCAAGTCACCTTTCCTTAGAAGCAAATAGTTAGC  447

seq1  TAAAGAGAGCTTATGAAATGACCTGAAGCACTAAAGGTCTCCTAGGGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGAGCTTATGAAATGACCTGAAGCACTAAAGGTCTCCTAGGGGTT  497

seq1  ATTCTGAAAGGGGTCAGGGAAATCCCAGCTGCAAGGACCGCTGATCTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAAAGGGGTCAGGGAAATCCCAGCTGCAAGGACCGCTGATCTGTT  547

seq1  TCCTGGAACGATGTCCTTTGAAAACTCTACAGAGGGGTTTTGCATCCGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACGATGTCCTTTGAAAACTCTACAGAGGGGTTTTGCATCCGAT  597

seq1  GTGGTATTTAATTTTTACAGACCAGTTTGCCTACGGGCACAGTCGGTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTATTTAATTTTTACAGACCAGTTTGCCTACGGGCACAGTCGGTGGG  647

seq1  GGGTTTCTATCACAAATTTTGGGTTTTTTTTTTGTTTTGTTTTGTTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCTATCACAAATTTTGGGTTTTTTTTTTGTTTTGTTTTGTTTTGT  697

seq1  TTCTTCCTCCATAATCTTACTGGAACTCTGCCTGAAGAATCAAAGGGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTCCATAATCTTACTGGAACTCTGCCTGAAGAATCAAAGGGGCA  747

seq1  TTCTGGCCTCTCATTATAAAAACAAGCAAGAAGTACAGAAATCCTGATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCCTCTCATTATAAAAACAAGCAAGAAGTACAGAAATCCTGATGG  797

seq1  AATTAAACAAAACTTTCTTTTCAAAGGTAATTCTACACAATTCCAAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAACAAAACTTTCTTTTCAAAGGTAATTCTACACAATTCCAAAAAG  847

seq1  CAAACTCTTTACATATGGAGAGAGAGAGAGAGAGAGAGAGAGAGTTAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCTTTACATATGGAGAGAGAGAGAGAGAGAGAGAGAGAGTTAGTT  897

seq1  TCAGGGACTGAAAAATAAATACTGATGGTGAAAATATGAATAATTTGATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGACTGAAAAATAAATACTGATGGTGAAAATATGAATAATTTGATT  947

seq1  TTTGATTGGGGGCCAATTAAACCAAAACCAGTACAGAGTAGAATTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTGGGGGCCAATTAAACCAAAACCAGTACAGAGTAGAATTC  993

seq1: chr4_146958061_146958709
seq2: B6Ng01-045E03.g_487_1135

seq1  AGAATTCATACAGGAGAGAGACCTCACAAATGTAGTGAATGTGACAAATG  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGAATTCATACAGGAGAGAGACCTCACTAATGTAGTGAATGTGACAAATG  50

seq1  CTTTACTGGAAAAGGCAGTCTGAGAATTCATCAGAGAATGCATACAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTGGAAAAGGCAGTCTGAGAATTCATCAGAGAATGCATACAGGAG  100

seq1  AGAAACCTTACAAGTGTAGTGAATGTGACAAATGCTTTACCCAAAAATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCTTACAAGTGTAGTGAATGTGACAAATGCTTTACCCAAAAATCC  150

seq1  CATCTTAATATTCATCAGGGAATTCATACAGGAGAGAAACCTTACAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTAATATTCATCAGGGAATTCATACAGGAGAGAAACCTTACAAATG  200

seq1  CAGTGAATGTGACAAATGCTTTACCCACAAATCCCATCTTATTAATCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAATGTGACAAATGCTTTACCCACAAATCCCATCTTATTAATCATC  250

seq1  AGAAAATTCATACAGGAGAGAAACCTTACAAATAGTTTACATGTGAC-AA  299
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGAAAATTCATACAGGAGAGAAACCTTACAAATAGTTTACATGTGACAAA  300

seq1  ATACAATACTCACAATGTCAGTCTGAGAAATCATGAA-TTTTTTCATACA  348
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATACAATACTCACAATGTCAGTCTGAGAAATCATGAATTTTTTTCATACA  350

seq1  GTAGAGAATATTTATAAATGAAGTGAACGAGACAATCCTTTACCAAGATA  398
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTAGAGAATATTTATAAATGAAGTGAACGAGACAATCCTTTACCAGGATA  400

seq1  TATCATCTTAAAATTCATTAGAGAATAGTTAGAGAAGACAAACTTTTCAA  448
      ||||||| |||||||||||||||||||||||||||||||| ||||||| |
seq2  TATCATC-TAAAATTCATTAGAGAATAGTTAGAGAAGACACACTTTTC-A  448

seq1  ATATATTGTAGGTATGAATCC--TTTTTTTTTTTTTTTTGGCCTATTTCC  496
      |||||||||| ||||||||||  ||||||||||||||||||||||||| |
seq2  ATATATTGTA-GTATGAATCCTTTTTTTTTTTTTTTTTTGGCCTATTT-C  496

seq1  TAGACTGTAACAGTGAATACTTACAGGCTAGAAACTTAACTCATGCATTG  546
      || ||||||||||||| || |  ||||||   ||||| |||| ||| |||
seq2  TAAACTGTAACAGTGATTATTATCAGGCTTAGAACTTTACTCTTGC-TTG  545

seq1  TATGAAGAAATATCTTTGACTTCACTTCAGGATAGAGAGAACATCTAAGA  596
      | ||||||||| ||||||||||| |||  ||| ||||||||||||||| |
seq2  TTTGAAGAAATTTCTTTGACTTC-CTTTCGGA-AGAGAGAACATCTAAAA  593

seq1  A---CTTTTTAGGGTAAAGTATTTCTGTTGGGGAAAATGT-GGCATATGT  642
      |    |||||||||| ||| ||||||||||||||||| || |||  | ||
seq2  AACTTTTTTTAGGGT-AAGAATTTCTGTTGGGGAAAAAGTGGGCTAAGGT  642

seq1  TTTATTC  649
      |||||||
seq2  TTTATTC  649