BAC Information

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BAC

Clone NameB6Ng01-045F07
Chromosome4 (Build37)
Map Location 119,157,594 - 119,287,053
singlet/doubletdoublet
Overlap geneBC057371, LOC666766, LOC384052, AA415398, Foxj3
Upstream geneTie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12
Downstream geneGuca2a, Guca2b, Hivep3, Edn2, Foxo6, Scmh1, Slfnl1, Ctps, EG667063
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045F07.bB6Ng01-045F07.g
ACCDH870816DH870817
length1,110864
definitionDH870816|Mus musculus domesticus DNA, BAC clone: B6Ng01-045F07, 5' end.DH870817|Mus musculus domesticus DNA, BAC clone: B6Ng01-045F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,285,928 - 119,287,053)(119,157,594 - 119,158,448)
sequence
gaattcactcaggcacttgtctttgtgagcttctgtggtctgaatatgaa
atgtccccacatgttttaacacttggtctccaatgttgcagccatttggg
gaggttgcaaggccttcagggggtgtgaaccttgagattctacagtgctg
cactgcttcctgttcactttctgctttctgaatgctgatgcaatatggct
agcccttgcagccatgacatcccacaatggtgagtgtaaataaaccattt
ctccctcgaattcattctagtcaggtactctgtcacacaaatgagcagta
actactacacagggcaattgccttaccaactgagccaccccacaggccca
ttcattgtcccacacttctctccctctattccatttactttccctccctt
cctccccaccttccttatccaaaagcacatcaggattttgactaacaaac
catcagcatcaacaagaaaaactgacttctttacaatcattttctgcata
aagactgtgtttccttagtgatggctttattttctgcccattatttctgg
tctgattgctcttctccaattatgggctgttcctacttgtctgtctcctg
gtccttcttgttgctctgagagcagcactagggctgcaggtatgcatgag
cacactccactaccgcctgcaactttcttacctcatacactttctccttc
tacagacatgtggctttgtgtccttataaatgttcaccagattcttcatt
tgactgttatataaatacttttctacttcacccccccccccccttaaacc
acagtccttctctgcatttgttttggttgtttccaaatattaaacccatt
atattaaactgaggctatttactttatgtctcacagcttgaagtcacttg
tatttcactgctttaaagtattttctaattatatcacatatctttgatcc
atgggagtaagtagtagcacattaattaattattaattattaattctaga
gaactttcttgctgtttttgcatgacttctaatccaatcattcaatggca
gtttattttatgttaacatggccttcaaactgattggtaactatcctcat
ggtattcaaa
gaattctcttaattggtgattgatgtgggagggcccagtccactgggggt
ggggctaccctaggcaagtggtctgcagctatagaaaaagcaggcgatgg
agctggagagatgactcagcaattaaaagcacatacctgttcttccagag
gaccagagttccagttccagcaaccacatcgggcggctggcaactgcctt
taactccccctccagagtaatgcaattcctctgacctctgcgggcacaca
ctcacatgtatgtatggcacacactcacatgtatgtatggcacacactca
catgtatgtatggcacacactcacatgcatgtatggcacacactcacatg
catttatggcacacactcacatgtatgtatggcacacactcacaagtgcc
tgctcacacaaacacacaattacaaacaatgaaacaaatctctacacata
ctaagataatggcaacaacaaaacactgagcgacccagaaagcacctcct
gccctgagttcttgccctggcctctccctatgatggactgtgacctgaga
agtgagccaaataaagccgctccttcccaagttgctttggtcttggtctt
tatcacaacaaaggaaagcaaactgagacatttttctttctttcttctga
gtccagctgtatgcctttcctcttccctggtgactctattttccccattt
gtcctcctaagttcgggctgttttctcacctctgcttctcaggaccctgg
ccctagacaaaggattgatgtgttttgctgctcctcattttaccttctag
ggcgcatcttctggtcttcctggaggataaaaaagatgcaacgtctccct
ttccacggaatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_119285928_119287053
seq2: B6Ng01-045F07.b_44_1153 (reverse)

seq1  TTTGAATACCCATG-GAGTAGTTACCAAAATCAGTATTTGGAAGGCATGT  49
      |||||||| ||||| |  ||||||||  ||||||  |||| | | |||||
seq2  TTTGAATA-CCATGAGGATAGTTACC--AATCAG--TTTGAAGGCCATGT  45

seq1  TAAAACATAAAATTAAACTTCCCATAGAATGAATTGGGATTAGAAGTCAT  99
      |  ||||||||| ||||| | |||| ||||||  | ||||||||||||||
seq2  T--AACATAAAA-TAAAC-TGCCATTGAATGA--TTGGATTAGAAGTCAT  89

seq1  AGCAAAAACAGCCAGAAAGTTCCTCTAGAATTAATTAATTAATTAATTAA  149
       ||||||||||| |||||||| |||||||||||| ||||||| |||||||
seq2  -GCAAAAACAGCAAGAAAGTT-CTCTAGAATTAA-TAATTAA-TAATTAA  135

seq1  TTAATGTGCTACTAACTTACTCCCATGGATCAAAGATATGTGATATAAAT  199
      ||||||||||||| |||||||||||||||||||||||||||||||| |||
seq2  TTAATGTGCTACT-ACTTACTCCCATGGATCAAAGATATGTGATAT-AAT  183

seq1  TAGAAAATACTTTAAAGCAGTGAAATACAAGTGACTTCAAAGCCTGTGAG  249
      ||||||||||||||||||||||||||||||||||||||||   |||||||
seq2  TAGAAAATACTTTAAAGCAGTGAAATACAAGTGACTTCAA--GCTGTGAG  231

seq1  ACATAAAGT-AATAGCCTCAGTTAAATATTAATGGTTTAAATATTTGGAA  298
      ||||||||| ||||||||||||| |||| |||||| || |||||||||||
seq2  ACATAAAGTAAATAGCCTCAGTTTAATA-TAATGGGTTTAATATTTGGAA  280

seq1  ACAACCAAAACAAATGCAGAGAAGGACTGTGGTTTAA-GGGGGGGGGGGG  347
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACAACCAAAACAAATGCAGAGAAGGACTGTGGTTTAAGGGGGGGGGGGGG  330

seq1  TGAAGTAG-AAAGTATTTTATATAACAGTCAAATG-AGAATCTGGTGAAC  395
      |||||||| |||||| ||||||||||||||||||| ||||||||||||||
seq2  TGAAGTAGAAAAGTA-TTTATATAACAGTCAAATGAAGAATCTGGTGAAC  379

seq1  ATTTATAAGGACACAAAGCCACATGTCTGTAGAAGGAGAAAGTGTATGAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAAGGACACAAAGCCACATGTCTGTAGAAGGAGAAAGTGTATGAG  429

seq1  GTAAGAAAGTTGCAGGCGGTAGTGGAGTGTGCTCATGCATACCTGCAGCC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAAGTTGCAGGCGGTAGTGGAGTGTGCTCATGCATACCTGCAGCC  479

seq1  CTAGTGCTGCTCTCAGAGCAACAAGAAGGACCAGGAGACAGACAAGTAGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGCTGCTCTCAGAGCAACAAGAAGGACCAGGAGACAGACAAGTAGG  529

seq1  AACAGCCCATAATTGGAGAAGAGCAATCAGACCAGAAATAATGGGCAGAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCCATAATTGGAGAAGAGCAATCAGACCAGAAATAATGGGCAGAA  579

seq1  AATAAAGCCATCACTAAGGAAACACAGTCTTTATGCAGAAAATGATTGTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGCCATCACTAAGGAAACACAGTCTTTATGCAGAAAATGATTGTA  629

seq1  AAGAAGTCAGTTTTTCTTGTTGATGCTGATGGTTTGTTAGTCAAAATCCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTCAGTTTTTCTTGTTGATGCTGATGGTTTGTTAGTCAAAATCCT  679

seq1  GATGTGCTTTTGGATAAGGAAGGTGGGGAGGAAGGGAGGGAAAGTAAATG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGCTTTTGGATAAGGAAGGTGGGGAGGAAGGGAGGGAAAGTAAATG  729

seq1  GAATAGAGGGAGAGAAGTGTGGGACAATGAATGGGCCTGTGGGGTGGCTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGAGGGAGAGAAGTGTGGGACAATGAATGGGCCTGTGGGGTGGCTC  779

seq1  AGTTGGTAAGGCAATTGCCCTGTGTAGTAGTTACTGCTCATTTGTGTGAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTAAGGCAATTGCCCTGTGTAGTAGTTACTGCTCATTTGTGTGAC  829

seq1  AGAGTACCTGACTAGAATGAATTCGAGGGAGAAATGGTTTATTTACACTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACCTGACTAGAATGAATTCGAGGGAGAAATGGTTTATTTACACTC  879

seq1  ACCATTGTGGGATGTCATGGCTGCAAGGGCTAGCCATATTGCATCAGCAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGTGGGATGTCATGGCTGCAAGGGCTAGCCATATTGCATCAGCAT  929

seq1  TCAGAAAGCAGAAAGTGAACAGGAAGCAGTGCAGCACTGTAGAATCTCAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGCAGAAAGTGAACAGGAAGCAGTGCAGCACTGTAGAATCTCAA  979

seq1  GGTTCACACCCCCTGAAGGCCTTGCAACCTCCCCAAATGGCTGCAACATT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCACACCCCCTGAAGGCCTTGCAACCTCCCCAAATGGCTGCAACATT  1029

seq1  GGAGACCAAGTGTTAAAACATGTGGGGACATTTCATATTCAGACCACAGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCAAGTGTTAAAACATGTGGGGACATTTCATATTCAGACCACAGA  1079

seq1  AGCTCACAAAGACAAGTGCCTGAGTGAATTC  1126
      |||||||||||||||||||||||||||||||
seq2  AGCTCACAAAGACAAGTGCCTGAGTGAATTC  1110

seq1: chr4_119157594_119158448
seq2: B6Ng01-045F07.g_67_930

seq1  GAATTCTCTTAATTGGTGATTGATGTGGGAGGGCCCAGTCCACTGGGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTAATTGGTGATTGATGTGGGAGGGCCCAGTCCACTGGGGGT  50

seq1  GGGGCTACCCTAGGCAAGTGGTCTGCAGCTATAGAAAAAGCAGGCGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTACCCTAGGCAAGTGGTCTGCAGCTATAGAAAAAGCAGGCGATGG  100

seq1  AGCTGGAGAGATGACTCAGCAATTAAAAGCACATACCTGTTCTTCCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAGAGATGACTCAGCAATTAAAAGCACATACCTGTTCTTCCAGAG  150

seq1  GACCAGAGTTCCAGTTCCAGCAACCACATCGGGCGGCTGGCAACTGCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGAGTTCCAGTTCCAGCAACCACATCGGGCGGCTGGCAACTGCCTT  200

seq1  TAACTCCCCCTCCAGAGTAATGCAATTCCTCTGACCTCTGCGGGCACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCCCCTCCAGAGTAATGCAATTCCTCTGACCTCTGCGGGCACACA  250

seq1  CTCACATGTATGTATGGCACACACTCACATGTATGTATGGCACACACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATGTATGTATGGCACACACTCACATGTATGTATGGCACACACTCA  300

seq1  CATGTATGTATGGCACACACTCACATGCATGTATGGCACACACTCACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATGTATGGCACACACTCACATGCATGTATGGCACACACTCACATG  350

seq1  CATTTATGGCACACACTCACATGTATGTATGGCACACACTCACAAGTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATGGCACACACTCACATGTATGTATGGCACACACTCACAAGTGCC  400

seq1  TGCTCACACAAACACACAATTACAAACAATGAAACAAATCTCTACACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACACAAACACACAATTACAAACAATGAAACAAATCTCTACACATA  450

seq1  CTAAGATAATGGCAACAACAAAACACTGAGCGACCCAGAAAGCACCTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATAATGGCAACAACAAAACACTGAGCGACCCAGAAAGCACCTCCT  500

seq1  GCCCTGAGTTCTTGCCCTGGCCTCTCCCTATGATGGACTGTGACCTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAGTTCTTGCCCTGGCCTCTCCCTATGATGGACTGTGACCTGAGA  550

seq1  AGTGAGCCAAATAAAGCCGCTCCTTCCCAAGTTGCTTTGGTCTTGGTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCCAAATAAAGCCGCTCCTTCCCAAGTTGCTTTGGTCTTGGTCTT  600

seq1  TATCACAACAAAGGAAAGCAAACTGAGACA-TTTTCTTTCTTTCTTCTGA  649
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TATCACAACAAAGGAAAGCAAACTGAGACATTTTTCTTTCTTTCTTCTGA  650

seq1  GTCCAGCTGTATGCC-TTCCTCTT-CCTGGTGACTCTA-TTTCCCCATTT  696
      ||||||||||||||| |||||||| ||||||||||||| |||||||||||
seq2  GTCCAGCTGTATGCCTTTCCTCTTCCCTGGTGACTCTATTTTCCCCATTT  700

seq1  GTCCTCCTAAG-TCGGGCTGTTTTCTCACCTCTGC-TCTCAGGACCCTGG  744
      ||||||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  GTCCTCCTAAGTTCGGGCTGTTTTCTCACCTCTGCTTCTCAGGACCCTGG  750

seq1  CCCTAGACAAAGGATTGATGTG-TTTGCTGCTCCTCATTTTACCTTCTAG  793
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCCTAGACAAAGGATTGATGTGTTTTGCTGCTCCTCATTTTACCTTCTAG  800

seq1  GGCGCATCTTCT-GTCCTCCTGGAGGAT-AGAGAGATGCAGCGTCTCCCT  841
      |||||||||||| ||| ||||||||||| | | ||||||| |||||||||
seq2  GGCGCATCTTCTGGTCTTCCTGGAGGATAAAAAAGATGCAACGTCTCCCT  850

seq1  TTCCACTGAATCTC  855
      |||||| |||||||
seq2  TTCCACGGAATCTC  864