BAC Information

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BAC

Clone NameB6Ng01-045I14
Chromosome4 (Build37)
Map Location 118,264,442 - 118,284,605
singlet/doubletdoublet
Overlap genenone
Upstream genePrnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik
Downstream geneEbna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045I14.bB6Ng01-045I14.g
ACCDH870967DH870968
length1,0781,005
definitionDH870967|Mus musculus domesticus DNA, BAC clone: B6Ng01-045I14, 5' end.DH870968|Mus musculus domesticus DNA, BAC clone: B6Ng01-045I14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,283,501 - 118,284,605)(118,264,442 - 118,265,472)
sequence
gaattccatttcccttctctctgagctcagagcccaacaagctccctgct
gcctgacaccctgtggattctttcttctccatgacttctgtttacccaca
atcccctccccataccggtttccttattttgtggcttgtgtaagggcttc
ctaaggaattctcaaaagaattgtttcccccattcctagttactgcttac
attagatagttcagattgtccctttatccgccaccttaccttggaattgt
ataaaagcatttggtgaggacacatgtctacatcttttctatgcacagta
tttcggtgggtccaggcctcccagcacaaaggccccttagctccgggcaa
gcagccctgcttctctcctctcctgaagagggccaacagctctcacctct
gagtccctttcctggccaatgcattctcttgctagtgggttcagccaagt
acagttccctctgtccgtcccctgccccatcacccagacacataccgatt
cctgtttgccctgaaagggcctggctaagagcactcagtctctgatcacc
taagacagttcctgtcctcagaaagcctgtgatacctgtggccggttctt
tgtggcatgcttaattgtctcttaacaataggacaggagctcaagacttg
aaacttcccgctgacctcatttactgccgtttcaaagagacattatacct
ctaaatcaaaatttatgaacaggtataaatatttattaagtgaatgaatg
aaaagagaagcctgggttcaaataccagctcagctaagactgtgtgatcc
tcgtaagtttatcttctgaacaacttatttctcacaaagcagaatcacca
cctgggtctagcgagcattcccactgtgctcgagtagagttcaagcagca
ttggctgcaggaaaggagatcagtgggtagcattgctctcagccaagaca
tccccagtccacctctgagagaaggatctcagatgtggctggctactgtg
ctagactcactactagacaggctggctggactcaagtgatcactggctca
ctccatgtcctggattatttgtgtgtgt
gaattcccttccctttcaagactccattgtatgtgtggaacacgtttctt
tatccacacatctgcctctggacacaggctgctttctttttataattttt
ttttaagatttatttatttattgtatgtaagtacactgtagctgttttca
gacactccagaagagggcatcagattttgttacgggtggttgtgagccac
catgtggttgctgggatttgaactcaggaccttcagaagagcagtcggcg
ctcttaaccactgagccatctcgccagcccacaggctgctttcttaagtt
agcacttttcctctttcttccattctgacttgaactgtttagctattaga
catagacatcacaggaagagggtgtaggactatttgcaagagcattccta
tattattattcccaggggtagtctttatacccataatctcagggagaggt
tgtgtgtggtttgaacgtttagctcataggaactgccaccattagaagtt
ttggctttgttggaggaagtgtgtcactttggaggtgggctttgaggtta
tatatatgatcaaactctgcccagtgtagaatccagtctcctctgggctg
cctttggatcaagatgtagaactctcagctcctccagcaccatttctgtc
tgcatgctgccatgcttcccctaatgatgataatggactgaacctctgaa
cctgaaagccagctcccattcaatgtctgcctttataagagttgccttgg
tcatggtgtctctttacagtgatggaaaccctaaccaagacagatgggct
ctagtctcttggggtgtgacttccctttgtctgagagcagtggcatctga
gggtcattagtagtagacctcactgcagctgggaattctgatgtgactag
ctgggcatctacagcactcaccagtgtcatttgtgacatgatcatagtgt
gactctgtacttctagaaattccaggatcatcatgggttgactagcagca
gtgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_118283501_118284605
seq2: B6Ng01-045I14.b_46_1123 (reverse)

seq1  ACACACACAAAATTAATTCCAGGACATGGGAAGTTGAGGCAGGTGGATCA  50
      |||||||||||  ||| ||||||||||||  || |||| |||   |||||
seq2  ACACACACAAA--TAA-TCCAGGACATGG--AG-TGAGCCAG--TGATCA  42

seq1  CTGTGAGTCCAAGGCCAGCCTGGTCTAGTTAGTGAGTTCTAGCACAGTAG  100
      || ||||||||  |||||||| |||||| ||||||| |||||||||||| 
seq2  CT-TGAGTCCA--GCCAGCCT-GTCTAG-TAGTGAG-TCTAGCACAGTA-  85

seq1  GCCAGCCACATCTTGAGATCCTGTCTTCTCAGGGGTGGGCTGGGGGATGT  150
      |||||||||||| ||||||||| || |||||| ||||| || ||||||||
seq2  GCCAGCCACATC-TGAGATCCT-TC-TCTCAGAGGTGGACT-GGGGATGT  131

seq1  CTTTGGCTGAGAGCAATGCTACCCACTGATCTCCTTTCCTGCAGCCAAAT  200
      | |||||||||||||||||||||||||||||||||||||||||||| |||
seq2  C-TTGGCTGAGAGCAATGCTACCCACTGATCTCCTTTCCTGCAGCC-AAT  179

seq1  GCTGCTTGGAACTCTACTCGGAGCACAGTGGGAATGCTCGCTAGACCCAG  250
      ||||||| ||||||||||| ||||||||||||||||||||||||||||| 
seq2  GCTGCTT-GAACTCTACTC-GAGCACAGTGGGAATGCTCGCTAGACCCA-  226

seq1  GGTGGTGATTCTTGCTTTGTTGAGAAATAAGTTGTTCAGAAGATAAAACT  300
      ||||||||||| ||||||| |||||||||||||||||||||||| |||||
seq2  GGTGGTGATTC-TGCTTTG-TGAGAAATAAGTTGTTCAGAAGAT-AAACT  273

seq1  TACGAGGATCACACAGTCTTAGCTGAGCTGGTATTTGAACCCAGGCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAGGATCACACAGTCTTAGCTGAGCTGGTATTTGAACCCAGGCTTCT  323

seq1  CTTTTCATTCATTCACTTAATAAATATTTATACCTGTTCATAAATTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATTCATTCACTTAATAAATATTTATACCTGTTCATAAATTTTGA  373

seq1  TTTAGAGGTATAATGTCTCTTTGAAACGGCAGTAAATGAGGTCAGCGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGGTATAATGTCTCTTTGAAACGGCAGTAAATGAGGTCAGCGGGA  423

seq1  AGTTTCAAGTCTTGAGCTCCTGTCCTATTGTTAAGAGACAATTAAGCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAAGTCTTGAGCTCCTGTCCTATTGTTAAGAGACAATTAAGCATG  473

seq1  CCACAAAGAACCGGCCACAGGTATCACAGGCTTTCTGAGGACAGGAACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAGAACCGGCCACAGGTATCACAGGCTTTCTGAGGACAGGAACTG  523

seq1  TCTTAGGTGATCAGAGACTGAGTGCTCTTAGCCAGGCCCTTTCAGGGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGTGATCAGAGACTGAGTGCTCTTAGCCAGGCCCTTTCAGGGCAA  573

seq1  ACAGGAATCGGTATGTGTCTGGGTGATGGGGCAGGGGACGGACAGAGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAATCGGTATGTGTCTGGGTGATGGGGCAGGGGACGGACAGAGGGA  623

seq1  ACTGTACTTGGCTGAACCCACTAGCAAGAGAATGCATTGGCCAGGAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACTTGGCTGAACCCACTAGCAAGAGAATGCATTGGCCAGGAAAGG  673

seq1  GACTCAGAGGTGAGAGCTGTTGGCCCTCTTCAGGAGAGGAGAGAAGCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGAGGTGAGAGCTGTTGGCCCTCTTCAGGAGAGGAGAGAAGCAGG  723

seq1  GCTGCTTGCCCGGAGCTAAGGGGCCTTTGTGCTGGGAGGCCTGGACCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTGCCCGGAGCTAAGGGGCCTTTGTGCTGGGAGGCCTGGACCCAC  773

seq1  CGAAATACTGTGCATAGAAAAGATGTAGACATGTGTCCTCACCAAATGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAATACTGTGCATAGAAAAGATGTAGACATGTGTCCTCACCAAATGCT  823

seq1  TTTATACAATTCCAAGGTAAGGTGGCGGATAAAGGGACAATCTGAACTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACAATTCCAAGGTAAGGTGGCGGATAAAGGGACAATCTGAACTAT  873

seq1  CTAATGTAAGCAGTAACTAGGAATGGGGGAAACAATTCTTTTGAGAATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTAAGCAGTAACTAGGAATGGGGGAAACAATTCTTTTGAGAATTC  923

seq1  CTTAGGAAGCCCTTACACAAGCCACAAAATAAGGAAACCGGTATGGGGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGAAGCCCTTACACAAGCCACAAAATAAGGAAACCGGTATGGGGAG  973

seq1  GGGATTGTGGGTAAACAGAAGTCATGGAGAAGAAAGAATCCACAGGGTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGTGGGTAAACAGAAGTCATGGAGAAGAAAGAATCCACAGGGTGT  1023

seq1  CAGGCAGCAGGGAGCTTGTTGGGCTCTGAGCTCAGAGAGAAGGGAAATGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGCAGGGAGCTTGTTGGGCTCTGAGCTCAGAGAGAAGGGAAATGG  1073

seq1  AATTC  1105
      |||||
seq2  AATTC  1078

seq1: chr4_118264442_118265472
seq2: B6Ng01-045I14.g_69_1073

seq1  GAATTCCCTTCCCTTTCAAGACTCCATTGTATGTGTGGAACACGTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTCCCTTTCAAGACTCCATTGTATGTGTGGAACACGTTTCTT  50

seq1  TATCCACACATCTGCCTCTGGACACAGGCTGCTTTCTTTTTATAATTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACACATCTGCCTCTGGACACAGGCTGCTTTCTTTTTATAATTTTT  100

seq1  TTTTAAGATTTATTTATTTATTGTATGTAAGTACACTGTAGCTGTTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGATTTATTTATTTATTGTATGTAAGTACACTGTAGCTGTTTTCA  150

seq1  GACACTCCAGAAGAGGGCATCAGATTTTGTTACGGGTGGTTGTGAGCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCCAGAAGAGGGCATCAGATTTTGTTACGGGTGGTTGTGAGCCAC  200

seq1  CATGTGGTTGCTGGGATTTGAACTCAGGACCTTCAGAAGAGCAGTCGGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGTTGCTGGGATTTGAACTCAGGACCTTCAGAAGAGCAGTCGGCG  250

seq1  CTCTTAACCACTGAGCCATCTCGCCAGCCCACAGGCTGCTTTCTTAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAACCACTGAGCCATCTCGCCAGCCCACAGGCTGCTTTCTTAAGTT  300

seq1  AGCACTTTTCCTCTTTCTTCCATTCTGACTTGAACTGTTTAGCTATTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTTTCCTCTTTCTTCCATTCTGACTTGAACTGTTTAGCTATTAGA  350

seq1  CATAGACATCACAGGAAGAGGGTGTAGGACTATTTGCAAGAGCATTCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACATCACAGGAAGAGGGTGTAGGACTATTTGCAAGAGCATTCCTA  400

seq1  TATTATTATTCCCAGGGGTAGTCTTTATACCCATAATCTCAGGGAGAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATTCCCAGGGGTAGTCTTTATACCCATAATCTCAGGGAGAGGT  450

seq1  TGTGTGTGGTTTGAACGTTTAGCTCATAGGAACTGCCACCATTAGAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGGTTTGAACGTTTAGCTCATAGGAACTGCCACCATTAGAAGTT  500

seq1  TTGGCTTTGTTGGAGGAAGTGTGTCACTTTGGAGGTGGGCTTTGAGGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTGTTGGAGGAAGTGTGTCACTTTGGAGGTGGGCTTTGAGGTTA  550

seq1  TATATATGATCAAACTCTGCCCAGTGTAGAATCCAGTCTCCTCTGGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGATCAAACTCTGCCCAGTGTAGAATCCAGTCTCCTCTGGGCTG  600

seq1  CCTTTGGATCAAGATGTAGAACTCTCAGCTCCTCCAGCACCATTTCTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGATCAAGATGTAGAACTCTCAGCTCCTCCAGCACCATTTCTGTC  650

seq1  TGCATGCTGCCATGCTTCCCCTAATGATGATAATGGACTGAACCTCTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCTGCCATGCTTCCCCTAATGATGATAATGGACTGAACCTCTGAA  700

seq1  CCTGAAAGCCAGCTCCCATTCAATGTCTGCCTTTATAAGAGTTGCCTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAGCCAGCTCCCATTCAATGTCTGCCTTTATAAGAGTTGCCTTGG  750

seq1  TCATGGTGTCTCTTTACAGTGATGGAAACCCTAACCAAGACAGATGGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTGTCTCTTTACAGTGATGGAAACCCTAACCAAGACAGATGGGCT  800

seq1  CTAGTCTCTTGGGGTGTGACTTCCCTTTGTCTGAGAGCAGTGGGCATCTG  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTAGTCTCTTGGGGTGTGACTTCCCTTTGTCTGAGAGCAGT-GGCATCTG  849

seq1  AGGGTCATTAGTAGGTAGACCTCACTGCAGCTGGGAATTCTGATGGTGAC  900
      ||||||||||||| |||||||||||||||||||||||||||||| |||| 
seq2  AGGGTCATTAGTA-GTAGACCTCACTGCAGCTGGGAATTCTGAT-GTGA-  896

seq1  CTAGCTGGGGCATCTACAGCACCCACCCAAGGTGTCATTTTGTGACAAAT  950
      |||||| ||||||||||||||| ||||    |||||| ||||||||  ||
seq2  CTAGCT-GGGCATCTACAGCACTCACC---AGTGTCA-TTTGTGAC--AT  939

seq1  GATCATTAGGTGTGACTCTGGTTACTTCCTAGGGAAAATTCCCAGGAATT  1000
      ||||||   |||||||||||  ||||| ||||   ||||| ||||||   
seq2  GATCAT--AGTGTGACTCTG--TACTT-CTAG---AAATT-CCAGGA---  977

seq1  TCATCATGGGTATGACTAGCCAGCAGGTGCC  1031
      ||||||||||| ||||||| ||||| |||||
seq2  TCATCATGGGT-TGACTAG-CAGCA-GTGCC  1005