BAC Information

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BAC

Clone NameB6Ng01-045L13
Chromosome4 (Build37)
Map Location 75,982,318 - 76,116,667
singlet/doubletdoublet
Overlap genePtprd
Upstream geneLOC100039833, LOC100039884, LOC667845
Downstream geneLOC667858, LOC667862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045L13.bB6Ng01-045L13.g
ACCDH871095DH871096
length1,1041,145
definitionDH871095|Mus musculus domesticus DNA, BAC clone: B6Ng01-045L13, 5' end.DH871096|Mus musculus domesticus DNA, BAC clone: B6Ng01-045L13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,115,544 - 76,116,667)(75,982,318 - 75,983,473)
sequence
gaattccaaaatttagaattctggtttcagtcattgaaattcaacagtac
tctgctgctgagcaggcttgctattttaataagtctgtgatttataacta
tgatagaagatatccacttaaaccacttcttaatgtgtattaatcaccga
ggaaatataaaaaagcaaaccagcagcccttgctgcatgacattggcagg
tgagccctgttgtaagagaacagttgtgttctcctttgtattgtacaaca
ctctctgaaggggtactctgcacacacattcctatgagtaaatgcaaaaa
tgaaggtatggtgagcaaacaagtgaatgaaagcacttagagcaaagctg
atagatgtgcaagtagtgtgttcactaattacaactgacaccagagtaac
tgcagacctaggagaactttaaaggggattccataacaggccaacactca
tatcactgagaacagatgcaatttaccagacctcataatgggttggtaaa
aggataactttgaatcaatctaaccgactcctgttttccatccatgccca
ggataaaacaaatgttctatatcaccaaccctaagaacccagtgaacaaa
gacagaagcaccagtcacctcgaggaagtgtaggactccaattaactaga
gccaccaacatcactgcgaatactaaagggggctttaagctgtggggaat
ggaattagctgagtccttttcttttcctctgaagcagatatatctatttc
ttctttactttccttttgccatcattgctgtctctcatccctgactctgg
tcctaaacacctgcaccacgtgtttgggcttgtttggatggctcaagaag
cagctgatagtatatgaggtacaattgtcagcttatgtccctcccagtat
tttctgtttgggaaccaagaattgcacagaggacatgacacagattccac
gtactgttttccagtatcacaaatgaccagccactggaattctaagatac
agtgtttctttactttctctgtaagtctgagaatgtgatctggcatgcag
cactatgatcttccgtgcaggtagctctctacggctctaaggtttcatcg
tcag
gaattcagcacacatgaccctgatgcatgcccttgaagagaagcctttcc
cccactcacagggatgctgcagctccaaggaagaaattactcagttgcca
gggttgatttttattttaaggagtacatattaggtagaatggtgagggga
catcaggacaggatgaggaagtggaatctcgtgtgtctatttccccagtc
atgttgtgatgaatgctcaatctgcctggaatgctactgagagcacaggc
agtggactcctttttctgttgtaacatcaagtaaatggccactaacacaa
agaggagcaaagtaatgatagggggagaggaaaattcttaaatcagaact
tcaaaggtgctagcctcctaccagcacacatttcattgttatacaatgga
tattcatttcgcaagttagttattccctctcagcttcagtgaaaccatag
agaggtaaaaataaggaaaaaaaaattcatagacttcatcaacaacctca
cctaacagacaataaataatccaaaggacgtaatggaaccaggcacctag
tgatatgtgtctggctggcctaagagggtctgcaggtactcagttttttt
cctagcacagtgtgtgcttctatcctctctatccctagctcagataagat
tatactaattttgaacagggagaaaacaaatttctggaagttgcacagaa
gggggtgaagaaaatctaggaagacctaatgaatagatctgcacaagagt
ccttggcctagacctacaaagagatccccagtgaacattcactccagaaa
caaagaaccgccaaagaaaggactattgtttctttagtggtacatcatta
ggcactcgtatctgttagactgaaaagagcttagaagatgagcttaatag
aacggatcaaccagaagtagactttaaattcttatagctagtaactgaga
aataaaatccacacacacctcaaggaatacccacttttacatactgcatc
aaggtctttaaagcattggtttccctttaaatttagcacaaaatacagct
agctaagaagagaagaacggtggattctgaaagtaatccccaatggctga
tgtttattcagggaagatgcccgaccaatttgcttatttaaagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_76115544_76116667
seq2: B6Ng01-045L13.b_47_1150 (reverse)

seq1  CTGACGATGAAACACTTTAGAGCCAGTAGAGAAGCTACACATTGCACGGG  50
      |||||||||||  || |||||||| |||||| ||||||    ||||| ||
seq2  CTGACGATGAA--ACCTTAGAGCC-GTAGAG-AGCTAC---CTGCAC-GG  42

seq1  AAGATCATAGTTGGCTTGCATTGCCAGATCACATTTCTCCAGAACTTACA  100
      |||||||||||  || |||| |||||||||||| |||| ||| |||||||
seq2  AAGATCATAGT--GC-TGCA-TGCCAGATCACA-TTCT-CAG-ACTTACA  85

seq1  GGAGAAAGTAAAGGAAACACTGTATCTTAGAATTCCCAGTGGCTGGTTCA  150
       ||||||||||| ||||||||||||||||||||| ||||||||||| |||
seq2  -GAGAAAGTAAA-GAAACACTGTATCTTAGAATT-CCAGTGGCTGG-TCA  131

seq1  TTTGTGGATACTGGAAAACAGTACGTGGAATCTGTGTCATGTCCTCTGTG  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGT-GATACTGGAAAACAGTACGTGGAATCTGTGTCATGTCCTCTGTG  180

seq1  CAATTCTTGGTTCCCAAACAGAAAATACTGGGAGGGACATAAGCTGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTTGGTTCCCAAACAGAAAATACTGGGAGGGACATAAGCTGACAA  230

seq1  TTGTACCTCATATACTATCAGCTGCTTCTTGAGCCATCCAAACAAGCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACCTCATATACTATCAGCTGCTTCTTGAGCCATCCAAACAAGCCCA  280

seq1  AACACGTGGTGCAGGTGTTTAGGACCAGAGTCAGGGATGAGAGACAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACGTGGTGCAGGTGTTTAGGACCAGAGTCAGGGATGAGAGACAGCAA  330

seq1  TGATGGCAAAAGGAAAGTAAAGAAGAAATAGATATATCTGCTTCAGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCAAAAGGAAAGTAAAGAAGAAATAGATATATCTGCTTCAGAGGA  380

seq1  AAAGAAAAGGACTCAGCTAATTCCATTCCCCACAGCTTAAAGCCCCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGGACTCAGCTAATTCCATTCCCCACAGCTTAAAGCCCCCTTT  430

seq1  AGTATTCGCAGTGATGTTGGTGGCTCTAGTTAATTGGAGTCCTACACTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCGCAGTGATGTTGGTGGCTCTAGTTAATTGGAGTCCTACACTTC  480

seq1  CTCGAGGTGACTGGTGCTTCTGTCTTTGTTCACTGGGTTCTTAGGGTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGGTGACTGGTGCTTCTGTCTTTGTTCACTGGGTTCTTAGGGTTGG  530

seq1  TGATATAGAACATTTGTTTTATCCTGGGCATGGATGGAAAACAGGAGTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAGAACATTTGTTTTATCCTGGGCATGGATGGAAAACAGGAGTCG  580

seq1  GTTAGATTGATTCAAAGTTATCCTTTTACCAACCCATTATGAGGTCTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGATTGATTCAAAGTTATCCTTTTACCAACCCATTATGAGGTCTGGT  630

seq1  AAATTGCATCTGTTCTCAGTGATATGAGTGTTGGCCTGTTATGGAATCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCATCTGTTCTCAGTGATATGAGTGTTGGCCTGTTATGGAATCCC  680

seq1  CTTTAAAGTTCTCCTAGGTCTGCAGTTACTCTGGTGTCAGTTGTAATTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGTTCTCCTAGGTCTGCAGTTACTCTGGTGTCAGTTGTAATTAG  730

seq1  TGAACACACTACTTGCACATCTATCAGCTTTGCTCTAAGTGCTTTCATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACACTACTTGCACATCTATCAGCTTTGCTCTAAGTGCTTTCATTC  780

seq1  ACTTGTTTGCTCACCATACCTTCATTTTTGCATTTACTCATAGGAATGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTTGCTCACCATACCTTCATTTTTGCATTTACTCATAGGAATGTG  830

seq1  TGTGCAGAGTACCCCTTCAGAGAGTGTTGTACAATACAAAGGAGAACACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGAGTACCCCTTCAGAGAGTGTTGTACAATACAAAGGAGAACACA  880

seq1  ACTGTTCTCTTACAACAGGGCTCACCTGCCAATGTCATGCAGCAAGGGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCTCTTACAACAGGGCTCACCTGCCAATGTCATGCAGCAAGGGCT  930

seq1  GCTGGTTTGCTTTTTTATATTTCCTCGGTGATTAATACACATTAAGAAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTTTGCTTTTTTATATTTCCTCGGTGATTAATACACATTAAGAAGT  980

seq1  GGTTTAAGTGGATATCTTCTATCATAGTTATAAATCACAGACTTATTAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAAGTGGATATCTTCTATCATAGTTATAAATCACAGACTTATTAAA  1030

seq1  ATAGCAAGCCTGCTCAGCAGCAGAGTACTGTTGAATTTCAATGACTGAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAGCCTGCTCAGCAGCAGAGTACTGTTGAATTTCAATGACTGAAA  1080

seq1  CCAGAATTCTAAATTTTGGAATTC  1124
      ||||||||||||||||||||||||
seq2  CCAGAATTCTAAATTTTGGAATTC  1104

seq1: chr4_75982318_75983473
seq2: B6Ng01-045L13.g_68_1212

seq1  GAATTCAGCACACATGACCCTGATGCATGCCCTTGAAGAGAAGCCTTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCACACATGACCCTGATGCATGCCCTTGAAGAGAAGCCTTTCC  50

seq1  CCCACTCACAGGGATGCTGCAGCTCCAAGGAAGAAATTACTCAGTTGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCACAGGGATGCTGCAGCTCCAAGGAAGAAATTACTCAGTTGCCA  100

seq1  GGGTTGATTTTTATTTTAAGGAGTACATATTAGGTAGAATGGTGAGGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGATTTTTATTTTAAGGAGTACATATTAGGTAGAATGGTGAGGGGA  150

seq1  CATCAGGACAGGATGAGGAAGTGGAATCTCGTGTGTCTATTTCCCCAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGACAGGATGAGGAAGTGGAATCTCGTGTGTCTATTTCCCCAGTC  200

seq1  ATGTTGTGATGAATGCTCAATCTGCCTGGAATGCTACTGAGAGCACAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTGATGAATGCTCAATCTGCCTGGAATGCTACTGAGAGCACAGGC  250

seq1  AGTGGACTCCTTTTTCTGTTGTAACATCAAGTAAATGGCCACTAACACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGACTCCTTTTTCTGTTGTAACATCAAGTAAATGGCCACTAACACAA  300

seq1  AGAGGAGCAAAGTAATGATAGGGGGAGAGGAAAATTCTTAAATCAGAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGCAAAGTAATGATAGGGGGAGAGGAAAATTCTTAAATCAGAACT  350

seq1  TCAAAGGTGCTAGCCTCCTACCAGCACACATTTCATTGTTATACAATGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGTGCTAGCCTCCTACCAGCACACATTTCATTGTTATACAATGGA  400

seq1  TATTCATTTCGCAAGTTAGTTATTCCCTCTCAGCTTCAGTGAAACCATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTTCGCAAGTTAGTTATTCCCTCTCAGCTTCAGTGAAACCATAG  450

seq1  AGAGGTAAAAATAAGGAAAAAAAAATTCATAGACTTCATCAACAACCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTAAAAATAAGGAAAAAAAAATTCATAGACTTCATCAACAACCTCA  500

seq1  CCTAACAGACAATAAATAATCCAAAGGACGTAATGGAACCAGGCACCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACAGACAATAAATAATCCAAAGGACGTAATGGAACCAGGCACCTAG  550

seq1  TGATATGTGTCTGGCTGGCCTAAGAGGGTCTGCAGGTACTCAGTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGTGTCTGGCTGGCCTAAGAGGGTCTGCAGGTACTCAGTTTTTTT  600

seq1  CCTAGCACAGTGTGTGCTTCTATCCTCTCTATCCCTAGCTCAGATAAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCACAGTGTGTGCTTCTATCCTCTCTATCCCTAGCTCAGATAAGAT  650

seq1  TATACTAATTTTGAACA-GGAGAAAACAAATTTCTGGAAGTTGCACAGAA  699
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TATACTAATTTTGAACAGGGAGAAAACAAATTTCTGGAAGTTGCACAGAA  700

seq1  GGGGGTGAAGAAAATCTAGGAAGACCTAATGAATAGATCTGCACAAGAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGAAGAAAATCTAGGAAGACCTAATGAATAGATCTGCACAAGAGT  750

seq1  CCTTGGCCTAGACCTACAAAGAGATCCCCAGTGAACATTCACTCCAGAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCCTAGACCTACAAAGAGATCCCCAGTGAACATTCACTCCAGAAA  800

seq1  CAAAGAACCGCCAAAGAAAGGACTATTGTTTCTTTAGTGGTACATCATTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAACCGCCAAAGAAAGGACTATTGTTTCTTTAGTGGTACATCATTA  850

seq1  GGCACTCGTATCTGTTAGACTGAAAAGAGCTTAGAAGATGAGCTTAATAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTCGTATCTGTTAGACTGAAAAGAGCTTAGAAGATGAGCTTAATAG  900

seq1  AACGGATCAACCAGAAGTAGACTTTAAATTCTTATAGCTAGTAACTGAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AACGGATCAACCAGAAGTAGACTTTAAATTCTTATAGCTAGTAACTG-AG  949

seq1  AAATAAAATCCACACACACCTCAAGGAATACCCACTTTTACATACTGCCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAATAAAATCCACACACACCTCAAGGAATACCCACTTTTACATACTG-CA  998

seq1  TCAAGGTCTTTAAAGCATTGTTTTCCCTTTAAAATTTAGCAC-AAATACA  1048
      |||||||||||||||||||| ||||||||| ||||||||||| |||||| 
seq2  TCAAGGTCTTTAAAGCATTGGTTTCCCTTT-AAATTTAGCACAAAATAC-  1046

seq1  AGCTAGCTAAAGAAGAGAAGACGGGTGGA-TCTGAAGGTAAATTCACCCA  1097
      |||||||| ||||||||||||  |||||| |||||| ||||  || ||||
seq2  AGCTAGCT-AAGAAGAGAAGAACGGTGGATTCTGAAAGTAA--TC-CCCA  1092

seq1  AATGCTGATGTTTATCCAGGGGGAAAGATGCCAGACAAAATTTGCTTTAG  1147
      |  |||||||||||| |||||   |||||||| |||  |||||||||   
seq2  ATGGCTGATGTTTATTCAGGG---AAGATGCCCGAC-CAATTTGCTT--A  1136

seq1  TATAAAGCT  1156
      | |||||||
seq2  TTTAAAGCT  1145