BAC Information

Click to search

BAC

Clone NameB6Ng01-045N03
Chromosome4 (Build37)
Map Location 134,782,568 - 134,886,098
singlet/doubletdoublet
Overlap geneClic4, LOC676072, Srrm1
Upstream geneCatsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3
Downstream geneA330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045N03.bB6Ng01-045N03.g
ACCDH871164DH871165
length6341,026
definitionDH871164|Mus musculus domesticus DNA, BAC clone: B6Ng01-045N03, 5' end.DH871165|Mus musculus domesticus DNA, BAC clone: B6Ng01-045N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,885,467 - 134,886,098)(134,782,568 - 134,783,579)
sequence
gaattcactagagttttgttgcgaggctcatgttggacttcatattctcc
gtccttcacctccctgtcatcagatgtgcacatacaccaatgagcctgat
tttacatccctggatttttttcctaagagatccgtgcaggccttagtact
tttgagatatactagtcttatatttgctagttttctgctaggtgtggact
gttgactgtcactaaaattgtactgattagattgtcctgatgggggctgg
agagatggctcagaggttaagagagagcactgactgttgctcttctagag
gtcctgagttcaaatcccagcaaccacatggtggctccgaaccatctgta
ctgggatctaataccctcttctagtgtgtctgagacagctacagtgtact
catataaataataaataaaaagtgtaggttgtcctgatggtactgagaat
tgaacccatggcttcatgccatccatactaagtaaacgtggagtcattga
gtcttaacctctaagaaacgtttttcccagtgctgggtgtagaacccagg
accttgagcatgcagtgtaagggcccaaggggtactacaggggggcagtg
agtgagtgtgtgtgtgagtgtgtgagtgtgtgaa
gaattccaaattcagcctggctgcttaaggggggaggtaaaagacttcgg
gctcagccttcagcttcaaccccaacacttcctacctcggatgggctgca
cagagatgagccaaccctctccaggccagcattcttttcaatttcctttt
gctttgctttgtttggggatgggtatataacaaaggagaaggacaaactc
ctgcagttccccacgacaagaaatgctgtccctttcctatctccactgca
ggcagaccaaggaggaaaaacacgcctgaaagactgtctagtcttccagt
acataagagatggtatgaatgaaggaggaatacagaatggagaaaatagt
cacggatgcctgtgctttggtaaggatttgtccaaatcgagtcatccaaa
gattaagtaaaaaagccaggaatggtaacctatctctttattctcagcag
atcttggtttgaagctagcctggtctacatagttagctcaaagggtatag
agatcctgtctcaaaacacacattaagtagatataggcccaaagaattat
gcaagagggaggagaggttggggaaagtctcagtggttaagagcactggc
tgctcttctagaagacttgggtttgattctaggacccacacgggtggcta
agaaccagctgtcactctagtccaggggatccgattgattgtgccaaagg
gcttcggcacagacatccatgcagacaaaacacccattcatataaaattg
aaaataaaatcctaagaagaaaaaagtaattggccaaggggtaacccagg
aagtagtggcacaacctgtgaatctcagcactcttagaagctaaagcagg
gagggtcaccaggttctcatttctgggcctgttgtgggtaacacaaaggg
tacaaaagcagggactaatcttcaaagcatttagaggtagggactacaga
gcagttagcacacagagatgctaatattacaaatactaaagaaataaagg
ggctggagaagacggctcagtggtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_134885467_134886098
seq2: B6Ng01-045N03.b_45_677 (reverse)

seq1  TCACACACTCACACACTCACACACACACTCACTCACTG-CCCCCTGTAGT  49
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCACACACTCACACACTCACACACACACTCACTCACTGCCCCCCTGTAGT  50

seq1  ACCCCTTGGGCCCTTACACTGCATGCTCAAGGTCCTGGGTTCTACACCCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTGGGCCCTTACACTGCATGCTCAAGGTCCTGGGTTCTACACCCA  100

seq1  GCACTGGGAAAAACGTTTCTTAGAGGTTAAGACTCAATGACTCCACGTTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGGAAAAACGTTTCTTAGAGGTTAAGACTCAATGACTCCACGTTT  150

seq1  ACTTAGTATGGATGGCATGAAGCCATGGGTTCAATTCTCAGTACCATCAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTATGGATGGCATGAAGCCATGGGTTCAATTCTCAGTACCATCAG  200

seq1  GACAACCTACACTTTTTATTTATTATTTATATGAGTACACTGTAGCTGTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCTACACTTTTTATTTATTATTTATATGAGTACACTGTAGCTGTC  250

seq1  TCAGACACACTAGAAGAGGGTATTAGATCCCAGTACAGATGGTTCGGAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACACACTAGAAGAGGGTATTAGATCCCAGTACAGATGGTTCGGAGC  300

seq1  CACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTAGAAGAGCAACAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTAGAAGAGCAACAG  350

seq1  TCAGTGCTCTCTCTTAACCTCTGAGCCATCTCTCCAGCCCCCATCAGGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCTCTCTCTTAACCTCTGAGCCATCTCTCCAGCCCCCATCAGGAC  400

seq1  AATCTAATCAGTACAATTTTAGTGACAGTCAACAGTCCACACCTAGCAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAATCAGTACAATTTTAGTGACAGTCAACAGTCCACACCTAGCAGA  450

seq1  AAACTAGCAAATATAAGACTAGTATATCTCAAAAGTACTAAGGCCTGCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGCAAATATAAGACTAGTATATCTCAAAAGTACTAAGGCCTGCAC  500

seq1  GGATCTCTTAGGAAAAAAATCCAGGGATGTAAAATCAGGCTCATTGGTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCTTAGGAAAAAAATCCAGGGATGTAAAATCAGGCTCATTGGTGT  550

seq1  ATGTGCACATCTGATGACAGGGAGGTGAAGGACGGAGAATATGAAGTCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCACATCTGATGACAGGGAGGTGAAGGACGGAGAATATGAAGTCCA  600

seq1  ACATGAGCCTCGCAACAAAACTCTAGTGAATTC  632
      |||||||||||||||||||||||||||||||||
seq2  ACATGAGCCTCGCAACAAAACTCTAGTGAATTC  633

seq1: chr4_134782568_134783579
seq2: B6Ng01-045N03.g_67_1092

seq1  GAATTCCAAATTCAGCCTGGCTGCTTAAGGGGGGAGGTAAAAGACTTCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATTCAGCCTGGCTGCTTAAGGGGGGAGGTAAAAGACTTCGG  50

seq1  GCTCAGCCTTCAGCTTCAACCCCAACACTTCCTACCTCGGATGGGCTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCCTTCAGCTTCAACCCCAACACTTCCTACCTCGGATGGGCTGCA  100

seq1  CAGAGATGAGCCAACCCTCTCCAGGCCAGCATTCTTTTCAATTTCCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATGAGCCAACCCTCTCCAGGCCAGCATTCTTTTCAATTTCCTTTT  150

seq1  GCTTTGCTTTGTTTGGGGATGGGTATATAACAAAGGAGAAGGACAAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCTTTGTTTGGGGATGGGTATATAACAAAGGAGAAGGACAAACTC  200

seq1  CTGCAGTTCCCCACGACAAGAAATGCTGTCCCTTTCCTATCTCCACTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTTCCCCACGACAAGAAATGCTGTCCCTTTCCTATCTCCACTGCA  250

seq1  GGCAGACCAAGGAGGAAAAACACGCCTGAAAGACTGTCTAGTCTTCCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGACCAAGGAGGAAAAACACGCCTGAAAGACTGTCTAGTCTTCCAGT  300

seq1  ACATAAGAGATGGTATGAATGAAGGAGGAATACAGAATGGAGAAAATAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGAGATGGTATGAATGAAGGAGGAATACAGAATGGAGAAAATAGT  350

seq1  CACGGATGCCTGTGCTTTGGTAAGGATTTGTCCAAATCGAGTCATCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGATGCCTGTGCTTTGGTAAGGATTTGTCCAAATCGAGTCATCCAAA  400

seq1  GATTAAGTAAAAAAGCCAGGAATGGTAACCTATCTCTTTATTCTCAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAGTAAAAAAGCCAGGAATGGTAACCTATCTCTTTATTCTCAGCAG  450

seq1  ATCTTGGTTTGAAGCTAGCCTGGTCTACATAGTTAGCTCAAAGGGTATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGTTTGAAGCTAGCCTGGTCTACATAGTTAGCTCAAAGGGTATAG  500

seq1  AGATCCTGTCTCAAAACACACATTAAGTAGATATAGGCCCAAAGAATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTGTCTCAAAACACACATTAAGTAGATATAGGCCCAAAGAATTAT  550

seq1  GCAAGAGGGAGGAGAGGTTGGGGAAAGTCTCAGTGGTTAAGAGCACTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGGGAGGAGAGGTTGGGGAAAGTCTCAGTGGTTAAGAGCACTGGC  600

seq1  TGCTCTTCTAGAAGACTTGGGTTTGAATTCTAGGACCCACAC-GGTGGCT  649
      ||||||||||||||||||||||||| |||||||||||||||| |||||||
seq2  TGCTCTTCTAGAAGACTTGGGTTTG-ATTCTAGGACCCACACGGGTGGCT  649

seq1  AAGAACCAGCTGTCACTCTAGTCCAGGGGATCCGATTGATTGTGCC-AAG  698
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAGAACCAGCTGTCACTCTAGTCCAGGGGATCCGATTGATTGTGCCAAAG  699

seq1  GGCTTCGGCACAGACATCCATGCAGACAAAACACCCATTCATATAAAA-T  747
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGCTTCGGCACAGACATCCATGCAGACAAAACACCCATTCATATAAAATT  749

seq1  GAAAATAAAAT-CTAAGAAG-AAAAAGTAATTGG-CAAGGGGTAACCCAG  794
      ||||||||||| |||||||| ||||||||||||| |||||||||||||||
seq2  GAAAATAAAATCCTAAGAAGAAAAAAGTAATTGGCCAAGGGGTAACCCAG  799

seq1  G-AGTAGTGGCAC-ACCTGTG-ATCCCAGCACTC-TAGAAGCTAAGGCA-  839
      | ||||||||||| ||||||| ||| |||||||| |||||||||| ||| 
seq2  GAAGTAGTGGCACAACCTGTGAATCTCAGCACTCTTAGAAGCTAAAGCAG  849

seq1  GGAGGGTCA-CAGGTTC-CATTCCT-GGCCTG-TCTGGGTAACACAAAGG  885
      ||||||||| ||||||| |||| || |||||| | |||||||||||||||
seq2  GGAGGGTCACCAGGTTCTCATTTCTGGGCCTGTTGTGGGTAACACAAAGG  899

seq1  --AC-AAAGCA-GGACT-ATCTCAAAAGCATTTAAGAGGTAAGGGACTAA  930
        || |||||| ||||| ||||  ||||||||| |||||| ||||||| |
seq2  GTACAAAAGCAGGGACTAATCTTCAAAGCATTT-AGAGGT-AGGGACT-A  946

seq1  CAGAGCAAGTAAGCACACAGAGAATGCTAAATATACAAATACTAAAGAAA  980
      |||||| ||| ||||||||||| |||||||   |||||||||||||||||
seq2  CAGAGC-AGTTAGCACACAGAG-ATGCTAATATTACAAATACTAAAGAAA  994

seq1  TAAAAGGGGCTGGAG-AGACGGCTCAGTGGTAA  1012
      | ||||||||||||| |||||||||||||||||
seq2  T-AAAGGGGCTGGAGAAGACGGCTCAGTGGTAA  1026