BAC Information

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BAC

Clone NameB6Ng01-046B20
Chromosome10 (Build37)4 (Build37)
Map Location 104,054,341 - 104,054,89789,736,642 - 89,737,544
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046B20.bB6Ng01-046B20.g
ACCDH871377DH871378
length927898
definitionDH871377|Mus musculus domesticus DNA, BAC clone: B6Ng01-046B20, 5' end.DH871378|Mus musculus domesticus DNA, BAC clone: B6Ng01-046B20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,054,341 - 104,054,897)(89,736,642 - 89,737,544)
sequence
gaattcaagacccagaaatgaacccacacacctatggtcacttgatcttt
gacaagggagcaaaaaccatccagtggaaaaaagacagcatcttcaacaa
atggtgctggcacaactggttgttataatgtagaagaatgggaatctatc
cattcctatctccttgtactaacgtcaaatctaagtggatcaaggaactc
cacataaaaccagagacactgaaatttatataggacaaagtggggaaaag
cctcgaagatatgggctcaggggaaaaattcctgaatagaacaggcttgt
gctgtaagatcgaggattgacaaatgggacctcatgaaactgcaaagctt
ctgcaaagcaaaggaaaccgtcaataagataaaaaggccaccaaaagatt
gggaaaggctctttacctagcctaaatcatataggggactaatatccaat
atatataaagaactcaagaatgtggactccagaaaatcaaataaccccat
gaaaaaatggggctcagtgctaaacaaagaattctcacctgaggaatact
gaatggctgagaagcacctgaaaaaatgttcagcatccttaatcatcaga
gaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaat
ggctaagatcaaaaattcaagtgacagcagatgctggcaaggatgtggag
aaagaggaacactcctccattgttgatgggattgcaagcttttacaacca
ctctggaaatcagtctggaggttcctcagaaaactggatatggtactaac
agaggatcctgcaatacctctcctggagaagaagagatgttccaactggt
agaaggacacatgctccactatgttcatagcagccttatttatatagcca
gagctggaaagacccagatgctcctca
gaattccagataagaagtccagaatagaatccttatcagaattacaaata
cccttgtcatctgctagctatcctccgaaatgatagggttgttaacaata
ttgatgattacaagtagccgtgggtgaggcaggacagaggagaacaggag
ttagggaaaatagtgataagacagacatgtgatcagttggattctcatgc
cgcagtccatcattgagcacagatgaagccccttctgtcatcgtgtgtta
gatatgggatcttgactgctgagcactgttacttcaatttggaaaatcct
gtaattaattttaggcacaaaattatacagtatttaatgatgagtgtaga
attttgtatgagaattttaagaattggctttccatttaaaattttacaat
aaggaattggttatatggaattataaataaggaacatatttagaatatat
tcatgattcttgaggatttcatacccatgtaatattatatctagtaatat
ctgtccctgtttctgccctccagaccctcctacatcctctcatcatatcc
ccttaccagctttgtgcattttacgttcctttttattttttttttacaaa
tatgctcctaattccaattaatgctgctaatattctatgggtgtggaacc
atgcaattgaggatggggtaaaagtggatacatactgaaaaagaatgact
cccatcctttagcaagtatcataactttttatttttaaacttactgaaac
atgaacattgcaaatgttttagcaacctatttatttcaattacatagtgt
caatgagtggcttagggatgataggatgaatgtcctagagataataagtg
gatggcttacaaatcccagaaaggatctctgaacccataattctcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104054341_104054897
seq2: B6Ng01-046B20.b_44_594 (reverse)

seq1  CGGTATTCCTCAGGTGAGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTT  50
      | ||||||||||||||||||||||||||| ||  ||||||||||||||||
seq2  CAGTATTCCTCAGGTGAGAATTCTTTGTTTAGCACTGAGCCCCATTTTTT  50

seq1  AATAGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATA  100
       || |||||||||||||||||| ||||||| |||||||||||||||||||
seq2  CATGGGGTTATTTGATTTTCTGGAGTCCACATTCTTGAGTTCTTTATATA  100

seq1  TGTTGGATATTAGTCCCCTATCTGAATTAGGATAGGTAAAGATCCTTTCT  150
      | ||||||||||||||||||| ||| ||||| |||||||||| |||||| 
seq2  TATTGGATATTAGTCCCCTATATGATTTAGGCTAGGTAAAGAGCCTTTCC  150

seq1  CAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCA  200
      |||||| ||||||| |||||| ||||||||||||| || ||||| |||||
seq2  CAATCTTTTGGTGGCCTTTTTATCTTATTGACGGTTTCCTTTGCTTTGCA  200

seq1  GAAGCTTTGCAATTTTATGAGGTCCCATTTATCAACTCTCTATCTTACAG  250
      ||||||||||| ||| |||||||||||||| ||||  ||| |||||||||
seq2  GAAGCTTTGCAGTTTCATGAGGTCCCATTTGTCAATCCTCGATCTTACAG  250

seq1  CACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTACCCATATCT  300
      |||||||     |||||||||||||||||||||||||||  |||||||||
seq2  CACAAGC-----CTGTTCTATTCAGGAATTTTTCCCCTGAGCCCATATCT  295

seq1  TCGAGGCTTTTCCCTACTTTTTCCTCTATAAGTTTCAGTGTCTCTGGTTT  350
      |||||||||||||| ||||| |||| ||||| ||||||||||||||||||
seq2  TCGAGGCTTTTCCCCACTTTGTCCTATATAAATTTCAGTGTCTCTGGTTT  345

seq1  TATGTGGAGTTCCTTAATCCACTTAGATTTTACCTTAGTACAAGGAGATA  400
      ||||||||||||||| |||||||||||||| || ||||||||||||||||
seq2  TATGTGGAGTTCCTTGATCCACTTAGATTTGACGTTAGTACAAGGAGATA  395

seq1  GTAATTGATCAATTCACAATCTTCTACATGATAACAGCCAGTTGTGCCAG  450
      | ||| |||  |||| || |||||||||| |||||| |||||||||||||
seq2  GGAATGGATAGATTCCCATTCTTCTACATTATAACAACCAGTTGTGCCAG  445

seq1  CATGATTTGTTGAAAATGCTGTCTTTTTTTCCACTGGATAGTTTTAGCTC  500
      ||  |||||||||| |||||||| ||||||||||||||| ||||| ||||
seq2  CACCATTTGTTGAAGATGCTGTC-TTTTTTCCACTGGATGGTTTTTGCTC  494

seq1  CCTTGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCATCTCTGGATCT  550
      |||||||||||||||||||||||||||||||||||||||| ||||| |||
seq2  CCTTGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCT  544

seq1  TCAATTC  557
      | |||||
seq2  TGAATTC  551

seq1: chr4_89736642_89737544
seq2: B6Ng01-046B20.g_66_963

seq1  GAATTCCAGATAAGAAGTCCAGAATAGAATCCTTATCAGAATTACAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATAAGAAGTCCAGAATAGAATCCTTATCAGAATTACAAATA  50

seq1  CCCTTGTCATCTGCTAGCTATCCTCCGAAATGATAGGGTTGTTAACAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTCATCTGCTAGCTATCCTCCGAAATGATAGGGTTGTTAACAATA  100

seq1  TTGATGATTACAAGTAGCCGTGGGTGAGGCAGGACAGAGGAGAACAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGATTACAAGTAGCCGTGGGTGAGGCAGGACAGAGGAGAACAGGAG  150

seq1  TTAGGGAAAATAGTGATAAGACAGACATGTGATCAGTTGGATTCTCATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGAAAATAGTGATAAGACAGACATGTGATCAGTTGGATTCTCATGC  200

seq1  CGCAGTCCATCATTGAGCACAGATGAAGCCCCTTCTGTCATCGTGTGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGTCCATCATTGAGCACAGATGAAGCCCCTTCTGTCATCGTGTGTTA  250

seq1  GATATGGGATCTTGACTGCTGAGCACTGTTACTTCAATTTGGAAAATCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGGATCTTGACTGCTGAGCACTGTTACTTCAATTTGGAAAATCCT  300

seq1  GTAATTAATTTTAGGCACAAAATTATACAGTATTTAATGATGAGTGTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAATTTTAGGCACAAAATTATACAGTATTTAATGATGAGTGTAGA  350

seq1  ATTTTGTATGAGAATTTTAAGAATTGGCTTTCCATTTAAAATTTTACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTATGAGAATTTTAAGAATTGGCTTTCCATTTAAAATTTTACAAT  400

seq1  AAGGAATTGGTTATATGGAATTATAAATAAGGAACATATTTAGAATATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATTGGTTATATGGAATTATAAATAAGGAACATATTTAGAATATAT  450

seq1  TCATGATTCTTGAGGATTTCATACCCATGTAATATTATATCTAGTAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATTCTTGAGGATTTCATACCCATGTAATATTATATCTAGTAATAT  500

seq1  CTGTCCCTGTTTCTGCCCTCCAGACCCTCCTACATCCTCTCATCATATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCTGTTTCTGCCCTCCAGACCCTCCTACATCCTCTCATCATATCC  550

seq1  CCTTACCAGCTTTGTGCATTTTACGTTCCTTTTTATTTTTTTTTTACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCAGCTTTGTGCATTTTACGTTCCTTTTTATTTTTTTTTTACAAA  600

seq1  TATGCTCCTAATTCCAATTAATGCTGCTAATATTCTATGGGTGTGGAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTCCTAATTCCAATTAATGCTGCTAATATTCTATGGGTGTGGAACC  650

seq1  ATGCAATTGAGGATGGGGTAAAAGTGGATACATACTGAAAAAGAATGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATTGAGGATGGGGTAAAAGTGGATACATACTGAAAAAGAATGACT  700

seq1  CCCATCCTTTAGCAAGTATCATAACTTTTTATTTTTAAACTTACTGAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCTTTAGCAAGTATCATAACTTTTTATTTTTAAACTTACTGAAAC  750

seq1  ATGAACATTGCAAATGTTTTAGCAACCTATTTATTTCAATTACATAGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATGAACATTGCAAATGTTTTAGCAACCTATTTATTTCAATTACATAG-TG  799

seq1  TCAATGAGTGGCTTAGGGATGATAGGATGAATGTCCTAGAGATAATAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCAATGAGTGGCTTAGGGATGATAGGATGAATGTCCTAGAGATAATAAG-  848

seq1  TGAATGGCTTACAAAATCCCAGAAAGGATCTCTGAAACCCATAAATTCTC  900
      || ||||||||| ||||||||||||||||||||| ||||||| |||||||
seq2  TGGATGGCTTAC-AAATCCCAGAAAGGATCTCTG-AACCCAT-AATTCTC  895

seq1  TTG  903
      |||
seq2  TTG  898