BAC Information

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BAC

Clone NameB6Ng01-046H07
Chromosome4 (Build37)
Map Location 67,009,554 - 67,177,227
singlet/doubletdoublet
Overlap geneLOC100039379
Upstream geneAstn2, LOC667499, Tlr4
Downstream geneHmgb1-rs18, LOC433715, Tcp1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046H07.bB6Ng01-046H07.g
ACCDH871616DH871617
length1,1281,046
definitionDH871616|Mus musculus domesticus DNA, BAC clone: B6Ng01-046H07, 5' end.DH871617|Mus musculus domesticus DNA, BAC clone: B6Ng01-046H07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,009,554 - 67,010,687)(67,176,175 - 67,177,227)
sequence
gaattccatgaaatgaaaaaaaaatgtcatgatatttgtccttctaactt
tctcttcttttttattctcctcttttttattctctcttgtattctcctct
ttctccccctcatctttcttttctcatttgtaaccacttcaccatcttag
ctgtaacctcattccgcacatgtccctttttgtggtttcacattacactc
agacttttctcaatataacaacatattttttatgtattcaagaatctagt
ataaagaatacatttgtctgatgactcataaaaaatctttgtctggtcaa
gagtattcattagctaaagactcatgaacataaatttgaacaaagaactt
cgcccatttagtacctctacatttgaataagtatatatcactaatacaaa
gactccagaactaggtcagtcataaaagtggccatagaaatgatgaaata
attagatactgtgaagaccttctgctttgtcagagggggactattttacc
tagaacctgatttgttcttctgtcttcagtacatctgattccaattctac
ctctttgagtcatttgaactctgttttccaaatgcctaacttagacagaa
ttttaagatgatgttcaatttgtatagacagaaactatttgtatcacagc
catgaattaagggaaggattgtaattttgtaaggatacaatccctataac
ttggttggctactaatccattttcttctagagaagaaaaaagaagaggaa
caggcatttcagatgaattgcagagagtgaagtatatactctgtaactta
ataattggagatcttagtttgagctctcataaagggagacactgaagcaa
cagtgtgaatataagtaattcatttgaaatgtaattataaaaatgactaa
taaactaatttatgagtcaaaagggtaagtgagatggtcaatagccgtgg
gcgatgtattcaattaccagcatgaatgaagggatcttaatcaaactgtg
ggattatagcaatgtttgaaaatgcctagctaagctttctggtcctatgt
caggagcatttgatggccatgttggttaggttgagaatttaacttcagca
tctccatcatgctgtgtgcttgtggggc
gaattctgtttactaaaacatgggaatgttatcaatggctacactattga
agaacttgacctttccttgtaaccataaagtcaaggtccggaggaaggaa
tggagcttcatagagcccttccatatccatcattgtcgatgggtccaatg
ttgtgaagatcttgtgaagatatccatagctgcagaaagttgataaacaa
tcacatctagattttaacttacttctcagccctcattcctaaggttctta
taatttttctctgcctcttctgtgatggtccctgagtcttggacattgtg
atttagatatttcacttatagctgagcacactactctttgactttgccct
tttattcaatttttaaaattctacttagtaaaaattaaggcatattcatt
tgtgtacatctacacctccacccattgatatcaaaagtattctcatactt
tgatgcacgtgtctgtgtgatttatgcatatgtgtgcaaatgttctatgt
tttatacatctatgtagcggctaaaggtcaataatggatatcttcattga
ttgttcgccacctttttgttatttttgagacagtttctcaataaacacag
agattgctgatttggctatatctctgaccaccagggttctatgttcatcc
tgttactaccttgccaatactaaagtgtgatgcttcaattattttacata
ggtgctcagggaacttatctcatgttttcttgcttgcactgcaagctcat
tgtctactgagctatctctccagttcccccctttctttcttcagtcactc
tccactgatcaatctgtagagttcaactcttgagccatttgttctacaac
ttataatacaaacagatgacatgcatggcacgtggctgccttttcaccta
ctggaatatatctgtttcaccatttttcttacttactgaatatttctcat
cttctcatgaataaacttgccatgaaacatttaaataaagtaatctaatt
ggtaaatattcattgtattagtgctgattgtgagatgaaacttgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_67009554_67010687
seq2: B6Ng01-046H07.b_46_1173

seq1  GAATTCCATGAAATGAAAAAAAAATGTCATGATATTTGTCCTTCTAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAAATGAAAAAAAAATGTCATGATATTTGTCCTTCTAACTT  50

seq1  TCTCTTCTTTTTTATTCTCCTCTTTTTTATTCTCTCTTGTATTCTCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTTTTTTATTCTCCTCTTTTTTATTCTCTCTTGTATTCTCCTCT  100

seq1  TTCTCCCCCTCATCTTTCTTTTCTCATTTGTAACCACTTCACCATCTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCCCTCATCTTTCTTTTCTCATTTGTAACCACTTCACCATCTTAG  150

seq1  CTGTAACCTCATTCCGCACATGTCCCTTTTTGTGGTTTCACATTACACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACCTCATTCCGCACATGTCCCTTTTTGTGGTTTCACATTACACTC  200

seq1  AGACTTTTCTCAATATAACAACATATTTTTTATGTATTCAAGAATCTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTTCTCAATATAACAACATATTTTTTATGTATTCAAGAATCTAGT  250

seq1  ATAAAGAATACATTTGTCTGATGACTCATAAAAAATCTTTGTCTGGTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAATACATTTGTCTGATGACTCATAAAAAATCTTTGTCTGGTCAA  300

seq1  GAGTATTCATTAGCTAAAGACTCATGAACATAAATTTGAACAAAGAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTCATTAGCTAAAGACTCATGAACATAAATTTGAACAAAGAACTT  350

seq1  CGCCCATTTAGTACCTCTACATTTGAATAAGTATATATCACTAATACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCATTTAGTACCTCTACATTTGAATAAGTATATATCACTAATACAAA  400

seq1  GACTCCAGAACTAGGTCAGTCATAAAAGTGGCCATAGAAATGATGAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCAGAACTAGGTCAGTCATAAAAGTGGCCATAGAAATGATGAAATA  450

seq1  ATTAGATACTGTGAAGACCTTCTGCTTTGTCAGAGGGGGACTATTTTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATACTGTGAAGACCTTCTGCTTTGTCAGAGGGGGACTATTTTACC  500

seq1  TAGAACCTGATTTGTTCTTCTGTCTTCAGTACATCTGATTCCAATTCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCTGATTTGTTCTTCTGTCTTCAGTACATCTGATTCCAATTCTAC  550

seq1  CTCTTTGAGTCATTTGAACTCTGTTTTCCAAATGCCTAACTTAGACAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGAGTCATTTGAACTCTGTTTTCCAAATGCCTAACTTAGACAGAA  600

seq1  TTTTAAGATGATGTTCAATTTGTATAGACAGAAACTATTTGTATCACAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGATGATGTTCAATTTGTATAGACAGAAACTATTTGTATCACAGC  650

seq1  CATGAATTAAGGGAAGGATTGTAATTTTGTAAGGATACAATCCCTATAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATTAAGGGAAGGATTGTAATTTTGTAAGGATACAATCCCTATAAC  700

seq1  TTGGTTGGCTACTAATCCATTTTCTTCTAGAGAAGAAAAAAGAAGAGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGGCTACTAATCCATTTTCTTCTAGAGAAGAAAAAAGAAGAGGAA  750

seq1  CAGGCATTTCAGATGAATTGCAGAGAGTGAAGTATATACTCTGTAACTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATTTCAGATGAATTGCAGAGAGTGAAGTATATACTCTGTAACTTA  800

seq1  ATAATTGGAGATCTTAGTTTGAGCTCTCATAAAGGGAGACACTGAAGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGGAGATCTTAGTTTGAGCTCTCATAAAGGGAGACACTGAAGCAA  850

seq1  CAGTGTGAATATAAGTAATTCATTTGAAATGTAATTATAAAAATGACTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGAATATAAGTAATTCATTTGAAATGTAATTATAAAAATGACTAA  900

seq1  TAAACTAATTTATGAGTCAAAAGGGTAAGTGAAGATGGTCAATAGCCGGT  950
      ||||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  TAAACTAATTTATGAGTCAAAAGGGTAAGTG-AGATGGTCAATAGCC-GT  948

seq1  GGGCGATGTATTCAATTACCAGCATGAATGAAGGGATCTTAATCAAACTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGATGTATTCAATTACCAGCATGAATGAAGGGATCTTAATCAAACTG  998

seq1  TGGGATTATAGCAATGTTTGAAGAATGCCTAGCTAAGCTTTCTGGT-CTA  1049
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  TGGGATTATAGCAATGTTTGAA-AATGCCTAGCTAAGCTTTCTGGTCCTA  1047

seq1  TGTCAGGAGCATATGATGGCAATGTTGGGTTAGGTAGCAGAATTTCACTC  1099
      |||||||||||| ||||||| ||||| |||||||| | ||||||| ||| 
seq2  TGTCAGGAGCATTTGATGGCCATGTT-GGTTAGGTTG-AGAATTTAACT-  1094

seq1  TCAGGCATCT-CATCATGCTGTGTGCTTTGTGGGGC  1134
      ||| |||||| ||||||||||||||| |||||||||
seq2  TCA-GCATCTCCATCATGCTGTGTGC-TTGTGGGGC  1128

seq1: chr4_67176175_67177227
seq2: B6Ng01-046H07.g_67_1112 (reverse)

seq1  TTCAAGTGTTCATCTTCACAATCAGCACTAATACAATGAATATTTACCAA  50
      ||||||| |||||| |||||||||||||||||||||||||||||||||||
seq2  TTCAAGT-TTCATC-TCACAATCAGCACTAATACAATGAATATTTACCAA  48

seq1  TTAAGATTACTTTATTTTAAATGTTTCATGGCAAGTTTATTCATGGAGAA  100
      || ||||||||||| ||||||||||||||||||||||||||||| |||||
seq2  TT-AGATTACTTTA-TTTAAATGTTTCATGGCAAGTTTATTCAT-GAGAA  95

seq1  GAATGAGAAATTATTCAGTAAGTAAGAAAAATGGTGAAACAGATATATTC  150
      | |||||||| |||||||||||||||||||||||||||||||||||||||
seq2  G-ATGAGAAA-TATTCAGTAAGTAAGAAAAATGGTGAAACAGATATATTC  143

seq1  CAGTAGGTGAAAAGGCAGCCACGTGCCATGCATGTCATCTGTTTGTATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGTGAAAAGGCAGCCACGTGCCATGCATGTCATCTGTTTGTATTA  193

seq1  TAAGTTGTAGAACAAATGGCTCAAGAGTTGAACTCTACAGATTGATCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGTAGAACAAATGGCTCAAGAGTTGAACTCTACAGATTGATCAGT  243

seq1  GGAGAGTGACTGAAGAAAGAAAGGGGGGAACTGGAGAGATAGCTCAGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTGACTGAAGAAAGAAAGGGGGGAACTGGAGAGATAGCTCAGTAG  293

seq1  ACAATGAGCTTGCAGTGCAAGCAAGAAAACATGAGATAAGTTCCCTGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAGCTTGCAGTGCAAGCAAGAAAACATGAGATAAGTTCCCTGAGC  343

seq1  ACCTATGTAAAATAATTGAAGCATCACACTTTAGTATTGGCAAGGTAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGTAAAATAATTGAAGCATCACACTTTAGTATTGGCAAGGTAGTA  393

seq1  ACAGGATGAACATAGAACCCTGGTGGTCAGAGATATAGCCAAATCAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATGAACATAGAACCCTGGTGGTCAGAGATATAGCCAAATCAGCAA  443

seq1  TCTCTGTGTTTATTGAGAAACTGTCTCAAAAATAACAAAAAGGTGGCGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTTTATTGAGAAACTGTCTCAAAAATAACAAAAAGGTGGCGAA  493

seq1  CAATCAATGAAGATATCCATTATTGACCTTTAGCCGCTACATAGATGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAATGAAGATATCCATTATTGACCTTTAGCCGCTACATAGATGTAT  543

seq1  AAAACATAGAACATTTGCACACATATGCATAAATCACACAGACACGTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATAGAACATTTGCACACATATGCATAAATCACACAGACACGTGCA  593

seq1  TCAAAGTATGAGAATACTTTTGATATCAATGGGTGGAGGTGTAGATGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTATGAGAATACTTTTGATATCAATGGGTGGAGGTGTAGATGTAC  643

seq1  ACAAATGAATATGCCTTAATTTTTACTAAGTAGAATTTTAAAAATTGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGAATATGCCTTAATTTTTACTAAGTAGAATTTTAAAAATTGAAT  693

seq1  AAAAGGGCAAAGTCAAAGAGTAGTGTGCTCAGCTATAAGTGAAATATCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGCAAAGTCAAAGAGTAGTGTGCTCAGCTATAAGTGAAATATCTA  743

seq1  AATCACAATGTCCAAGACTCAGGGACCATCACAGAAGAGGCAGAGAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAATGTCCAAGACTCAGGGACCATCACAGAAGAGGCAGAGAAAAA  793

seq1  TTATAAGAACCTTAGGAATGAGGGCTGAGAAGTAAGTTAAAATCTAGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGAACCTTAGGAATGAGGGCTGAGAAGTAAGTTAAAATCTAGATG  843

seq1  TGATTGTTTATCAACTTTCTGCAGCTATGGATATCTTCACAAGATCTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTTTATCAACTTTCTGCAGCTATGGATATCTTCACAAGATCTTCA  893

seq1  CAACATTGGACCCATCGACAATGATGGATATGGAAGGGCTCTATGAAGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTGGACCCATCGACAATGATGGATATGGAAGGGCTCTATGAAGCT  943

seq1  CCATTCCTTCCTCCGGACCTTGACTTTATGGTTACAAGGAAAGGTCAAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCTTCCTCCGGACCTTGACTTTATGGTTACAAGGAAAGGTCAAGT  993

seq1  TCTTCAATAGTGTAGCCATTGATAACATTCCCATGTTTTAGTAAACAGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAATAGTGTAGCCATTGATAACATTCCCATGTTTTAGTAAACAGAA  1043

seq1  TTC  1053
      |||
seq2  TTC  1046