BAC Information

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BAC

Clone NameB6Ng01-046K21
Chromosome4 (Build37)
Map Location 69,991,943 - 70,147,250
singlet/doubletdoublet
Overlap geneCdk5rap2, Megf9
Upstream geneLOC622491, LOC433716, LOC100039888, LOC242497, LOC671064
Downstream geneLOC100039565, LOC100039979
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046K21.bB6Ng01-046K21.g
ACCDH871770DH871771
length1,0411,068
definitionDH871770|Mus musculus domesticus DNA, BAC clone: B6Ng01-046K21, 5' end.DH871771|Mus musculus domesticus DNA, BAC clone: B6Ng01-046K21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,146,158 - 70,147,250)(69,991,943 - 69,993,028)
sequence
gaattccaggacagccagggtgatgcagagaaatcctgacatgaaaaaca
aaacaaaacaaaaaaaaaacaaattggtaaagtgatttagattttaccaa
tagatattttagatgttttataaaccatattgtgttattgtacaatatta
cataatgcacttatattaaaatatagaaaagaaattgagaagtttataac
ttgaaatgaagcaatgatgaatgtttatgatttttagtaatttcaaagtt
tttcttaatcttcatagcaactctatatatagagattagtaagtcacaaa
aatataaagaattccaaattaggctttccaagtctaagccctggatttaa
caccatgccacatatcacctataatgaaacgattaatagtctttattgat
attgagactatagtaacttcttttttttttttttttttttgagaaaaggt
ttcattatgtagccctagctggcttagaactcttaaaacaggctatcctc
aaactcatggagttatatctgcctttgctgtctctatatctgccacttct
gcctctacttctcaagtgctgggattaaaattgtgtgctactatcactgg
tggctccatgaagtacttccttaccatgcctcatatacatagccatacaa
gttatattcactttcttttattgtggtactggtaactgaattcaggatct
tgtgcatactagacaggtactttttcagagttatatcctcagcccaacac
acctaccattttaaaacaacaggatgctatgaagtagacatatcatcgcc
attctttgtttgtttgtttgttttgttttgttttttcagacaggtttctc
tgtatagcctggctgtctgactcacttgtagacagctggactcgactcag
aatcgctgctctgccccagtgctggataaggctgcgccacacaccgcaat
cgctattctatacatgcagttgacatttattgagtagtatagtagacgag
atactgctagaatatctgtgttagacaagtacaattctgtc
gaattcaaatagggattcctcagaaataggaagtgaagtggggagctaca
gagaacatgatcatagaaaggtggaaagacatgacacatcttacataagg
tatgtatgtatggagatgtcctggtgaacgccatgaatgtgtacagttag
catgtgctaagtagtgaagcatatgattattaatgaaaaccagtccactg
tattcttctcatcactctgacgcatggatccttaggctaacttcaactca
ctatgaagctaagggtgaccctgaactcctgattctcctgcctctccaag
cccagggattagagaacaggtagttagaactaacgaccacacctgactca
cagcactggtttttcagactgagcccaagaaaccccaggattaagaacat
ccaaccttggctgactactacaggagtcgtgtaaccacatgttcgtgggc
atccccggaaactaaccgactcagcaggtgtggggaagaagaaaagcaca
gaaccttcttatttgcttttaattcaaaaggttaccgttagaaaaaatct
tcagcacacccaaggtgcagctgctgtatttgctgtgagaacagggttga
gtgaaagtttgggaacctcaatcatacaccagtcccaccttgctccccag
tgaatagtacagccaagattgtaggatgccgtctcctaggcctctgaggt
tctgcactaatgggcgattttcctttgagatctgtacgtgcactctgggc
ccacactgaactgcgtgcttcctttgcatatcagggctttttcagagcag
gtaggttggtttttaaaagtggattatttgaaaactaaaatatccctcaa
atcttaacatcacattagaaatgaaacccagccctcacccttctcatcgg
aaagtctgttttatctctggccagatgagatgagaaagtctcatcatcac
atttcagcctatcagtttgctgtgagcaagcctgtcaaagtgctcgtgta
cttaaatatacaaagcaaattcttcaatcttatgaggtgaaggcattccg
catgcacgccgcaatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_70146158_70147250
seq2: B6Ng01-046K21.b_44_1084 (reverse)

seq1  GACAGGAATATGTACTTTGGTTCTAGAACACAGGTATTCTAGCAGTATCT  50
      |||| |||| |||||||    |||  ||||||| ||||||||||||||||
seq2  GACA-GAAT-TGTACTT---GTCT--AACACAGATATTCTAGCAGTATCT  43

seq1  TTCTGTCTTACTAATTACTACTCATATAAATGTTCAAACCTGCAATGTAA  100
          ||| |||||  ||||||||| ||||||| ||||  |||| ||||| 
seq2  ---CGTC-TACTA--TACTACTCA-ATAAATG-TCAA--CTGC-ATGTA-  81

seq1  TAAGAATAGCGATGTTGCCGGGTGTGGTGGCGCACGCCTTTAATCCCAGC  150
        ||||||||||  ||||  ||||| |||||||| |||||  || |||||
seq2  -TAGAATAGCGA--TTGC--GGTGT-GTGGCGCA-GCCTT--AT-CCAGC  121

seq1  ACTTGGGGGGCAGAGGCAGGCGGATTTCTGAGTTCGAGTCCAGCCTGGTC  200
      |||   |||||||| ||| |||   ||||||| |||||||||||   |||
seq2  ACT---GGGGCAGA-GCA-GCG--ATTCTGAG-TCGAGTCCAGC--TGTC  161

seq1  TACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTG  250
      ||| ||||||||  || |||||||| ||||||||||||||| ||||||||
seq2  TAC-AAGTGAGT--CA-GACAGCCA-GGCTATACAGAGAAA-CCTGTCTG  205

seq1  GAAAAAAACAAAACAAAACAAAACAAAACAAAACAAAAGAATGGCGATGA  300
        ||||||||||||||||||||   |||||||   |||||||||||||||
seq2  --AAAAAACAAAACAAAACAAA--CAAACAAA--CAAAGAATGGCGATGA  249

seq1  TATTGTCTACTTCATAGCATCCTGTTGTTTTAAAATGGTAGGTGTGTTGG  350
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TA-TGTCTACTTCATAGCATCCTGTTGTTTTAAAATGGTAGGTGTGTTGG  298

seq1  GCTGAGGATATAACTCTGGAAAAGTACCTGTCTAGTATGCACAAGATCCT  400
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCTGAGGATATAACTCTGAAAAAGTACCTGTCTAGTATGCACAAGATCCT  348

seq1  GAATTCAGTTACCAGTACCACAATAAAAGAAAGTGAATATAACTTGTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTACCAGTACCACAATAAAAGAAAGTGAATATAACTTGTATG  398

seq1  GCTATGTATATGAGGCATGGTAAGGAAGTACTTCATGGAGCCACCAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGTATATGAGGCATGGTAAGGAAGTACTTCATGGAGCCACCAGTGA  448

seq1  TAGTAGCACACAATTTTAATCCCAGCACTTGAGAAGTAGAGGCAGAAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGCACACAATTTTAATCCCAGCACTTGAGAAGTAGAGGCAGAAGTG  498

seq1  GCAGATATAGAGACAGCAAAGGCAGATATAACTCCATGAGTTTGAGGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATATAGAGACAGCAAAGGCAGATATAACTCCATGAGTTTGAGGATA  548

seq1  GCCTGTTTTAAGAGTTCTAAGCCAGCTAGGGCTACATAATGAAACCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTTTAAGAGTTCTAAGCCAGCTAGGGCTACATAATGAAACCTTTT  598

seq1  CTCAAAAAAAAAAAAAAAAAAAAGAAGTTACTATAGTCTCAATATCAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAAAAAAAAAAAAAAAAAGAAGTTACTATAGTCTCAATATCAATA  648

seq1  AAGACTATTAATCGTTTCATTATAGGTGATATGTGGCATGGTGTTAAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTATTAATCGTTTCATTATAGGTGATATGTGGCATGGTGTTAAATC  698

seq1  CAGGGCTTAGACTTGGAAAGCCTAATTTGGAATTCTTTATATTTTTGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTTAGACTTGGAAAGCCTAATTTGGAATTCTTTATATTTTTGTGA  748

seq1  CTTACTAATCTCTATATATAGAGTTGCTATGAAGATTAAGAAAAACTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTAATCTCTATATATAGAGTTGCTATGAAGATTAAGAAAAACTTTG  798

seq1  AAATTACTAAAAATCATAAACATTCATCATTGCTTCATTTCAAGTTATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTAAAAATCATAAACATTCATCATTGCTTCATTTCAAGTTATAA  848

seq1  ACTTCTCAATTTCTTTTCTATATTTTAATATAAGTGCATTATGTAATATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCAATTTCTTTTCTATATTTTAATATAAGTGCATTATGTAATATT  898

seq1  GTACAATAACACAATATGGTTTATAAAACATCTAAAATATCTATTGGTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAATAACACAATATGGTTTATAAAACATCTAAAATATCTATTGGTAA  948

seq1  AATCTAAATCACTTTACCAATTTGTTTTTTTTTTGTTTTGTTTTGTTTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAATCACTTTACCAATTTGTTTTTTTTTTGTTTTGTTTTGTTTTT  998

seq1  CATGTCAGGATTTCTCTGCATCACCCTGGCTGTCCTGGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCAGGATTTCTCTGCATCACCCTGGCTGTCCTGGAATTC  1041

seq1: chr4_69991943_69993028
seq2: B6Ng01-046K21.g_67_1134

seq1  GAATTCAAATAGGGATTCCTCAGAAATAGGAAGTGAAGTGGGGAGCTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATAGGGATTCCTCAGAAATAGGAAGTGAAGTGGGGAGCTACA  50

seq1  GAGAACATGATCATAGAAAGGTGGAAAGACATGACACATCTTACATAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACATGATCATAGAAAGGTGGAAAGACATGACACATCTTACATAAGG  100

seq1  TATGTATGTATGGAGATGTCCTGGTGAACGCCATGAATGTGTACAGTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGTATGGAGATGTCCTGGTGAACGCCATGAATGTGTACAGTTAG  150

seq1  CATGTGCTAAGTAGTGAAGCATATGATTATTAATGAAAACCAGTCCACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCTAAGTAGTGAAGCATATGATTATTAATGAAAACCAGTCCACTG  200

seq1  TATTCTTCTCATCACTCTGACGCATGGATCCTTAGGCTAACTTCAACTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTCTCATCACTCTGACGCATGGATCCTTAGGCTAACTTCAACTCA  250

seq1  CTATGAAGCTAAGGGTGACCCTGAACTCCTGATTCTCCTGCCTCTCCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAAGCTAAGGGTGACCCTGAACTCCTGATTCTCCTGCCTCTCCAAG  300

seq1  CCCAGGGATTAGAGAACAGGTAGTTAGAACTAACGACCACACCTGACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGATTAGAGAACAGGTAGTTAGAACTAACGACCACACCTGACTCA  350

seq1  CAGCACTGGTTTTTCAGACTGAGCCCAAGAAACCCCAGGATTAAGAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTGGTTTTTCAGACTGAGCCCAAGAAACCCCAGGATTAAGAACAT  400

seq1  CCAACCTTGGCTGACTACTACAGGAGTCGTGTAACCACATGTTCGTGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTTGGCTGACTACTACAGGAGTCGTGTAACCACATGTTCGTGGGC  450

seq1  ATCCCCGGAAACTAACCGACTCAGCAGGTGTGGGGAAGAAGAAAAGCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCGGAAACTAACCGACTCAGCAGGTGTGGGGAAGAAGAAAAGCACA  500

seq1  GAACCTTCTTATTTGCTTTTAATTCAAAAGGTTACCGTTAGAAAAAATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTCTTATTTGCTTTTAATTCAAAAGGTTACCGTTAGAAAAAATCT  550

seq1  TCAGCACACCCAAGGTGCAGCTGCTGTATTTGCTGTGAGAACAGGGTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACACCCAAGGTGCAGCTGCTGTATTTGCTGTGAGAACAGGGTTGA  600

seq1  GTGAAAGTTTGGGAACCTCAATCATACACCAGTCCCACCTTGCTCCCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGTTTGGGAACCTCAATCATACACCAGTCCCACCTTGCTCCCCAG  650

seq1  TGAATAGTACAGCCAAGATTGTAGGATGCCGTCTCCTAGGCCTCTGAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGTACAGCCAAGATTGTAGGATGCCGTCTCCTAGGCCTCTGAGGT  700

seq1  TCTGCACTAATGGGCGATTTTCCTTTGAGATCTGTACGTGCACTCTGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACTAATGGGCGATTTTCCTTTGAGATCTGTACGTGCACTCTGGGC  750

seq1  CAACACTGAACTGCGTGCTTCCTTTGCATATCAGGGCTTTTTCAGAGCAG  800
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTGAACTGCGTGCTTCCTTTGCATATCAGGGCTTTTTCAGAGCAG  800

seq1  GTAGGTTGGTTTTTAAAAGTGGATTATTTGAAAACTAAAATATCCCTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTTGGTTTTTAAAAGTGGATTATTTGAAAACTAAAATATCCCTCAA  850

seq1  ATCTTAACATCACATTAGAAATGAAACCCAGGCCCTCACCCTTCTCCATC  900
      |||||||||||||||||||||||||||||| |||||||||||||| ||| 
seq2  ATCTTAACATCACATTAGAAATGAAACCCA-GCCCTCACCCTTCT-CAT-  897

seq1  CGGAAAGTCTGTTTTATCTCTGGCCAGATGGAGAATGAGAAAGTTCTCAT  950
      ||||||||||||||||||||||||||||| ||| ||||||||| ||||||
seq2  CGGAAAGTCTGTTTTATCTCTGGCCAGAT-GAG-ATGAGAAAG-TCTCAT  944

seq1  CCATCACATTTCAGCCTTATCAGGTTTTGCTGTGAGCAAGCCTGTCAAAG  1000
       ||||||||||||||| ||||||  |||||||||||||||||||||||||
seq2  -CATCACATTTCAGCC-TATCAG--TTTGCTGTGAGCAAGCCTGTCAAAG  990

seq1  TGCTCGATGTTACTTTTAAATATACAAAAGCAATTTCTTCAAAATCTTAA  1050
      |||||| || |||  |||||||||| ||||||| ||||||  |||||| |
seq2  TGCTCG-TG-TAC--TTAAATATAC-AAAGCAAATTCTTC--AATCTT-A  1032

seq1  TGAGGTAGAGGCATTCAGCAATGCACG-CGCAATTTC  1086
      ||||||  |||||||| || ||||||| |||||||||
seq2  TGAGGTGAAGGCATTCCGC-ATGCACGCCGCAATTTC  1068